Cqui014006.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:175001237-175003101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.5 1.6e+02 2.8 0.4 1 23 221 244 221 244 0.89 2 10 9.7 2.8e+02 2.0 3.1 6 23 253 270 253 270 0.97 3 10 0.011 0.3 11.4 0.7 3 23 278 299 276 299 0.93 4 10 4.3e-07 1.2e-05 25.2 1.0 1 23 306 328 306 328 0.98 5 10 2.3 67 4.0 0.0 1 10 331 340 331 353 0.85 6 10 0.0033 0.094 13.0 4.7 3 23 361 381 359 381 0.97 7 10 0.0061 0.17 12.1 1.7 2 23 391 413 390 413 0.93 8 10 0.0019 0.055 13.7 1.0 1 23 420 443 420 443 0.96 9 10 0.00012 0.0034 17.5 3.8 1 23 448 470 448 470 0.98 10 10 6e-05 0.0017 18.4 2.7 1 23 476 499 476 499 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAGGTCGCCAACAGTTGCCGCCTGTGTCTGCAGCCGGATGTAAACAACCCATCCGGATTGACCGACTTTGCAACCAACTCCGTAGACAGCGCTCCCTTGAGTGATAAACTCAGCAGTGTTTTTAGTTTTACGttggaaAAAATAGACGTCCTGCCCAAGTTAGTTTGCGGAACCTGCTGCACCATGGTCGGTGACTTTCACGATTTCTCCGAGCGGGTCCAGCACAATCAGGAATACTTGCGAATGCTCGTGGACCAGCAGGAGCAAGTCAAGCAGGAAGCAATGGACGGAGACTGGGACGGCGAGGAGGTTGGTCGAGGAACGGAGGTTGCCCCGGAAATCGTAAAGATCGAGCCGGAACTGCTGCCAGAGGGTGACTCCGATGGGGACAACAGTGAGGGTGAAAACAGGTTGGACGAATCGTCGGAATCGGACTCGGATTTCAGCGAGGGAGATGACGATTGGACGCCGCAAGTTACGGAGAGTAGAGAGGAAGAACCGGTGGTGAGGACAAAACGAAAGTACACGAGGCGAGCGCCGTTGAAGCCGAAAAAGGAGAAAAAGAAACCCGGACACGACCCCTCGAAAGATTACCGCAACAAGCCGAAAGAGGAGATTGAAGAAGAGGACCGACTGATCTTGGAGTATTTCAAGTTTGCTTGCGAACTTTGTCACGATCCCGCCGATACGTTTATCGAGCTACGGAGGCACTTTCGAGAGATACACAATCAAAAGGGCTTTCATCGGTGCTGCAACAAGAAACTGTTCAAGCGGTGCCATCTGCTGGAGCACATCCAAGTACATCTCAATCCGAACCTTTACGGTTGCGATCTCTGTTCGAAGAGCTTCTCGACAAAGGAGTACAAAGAACTTCACTGGATGCAAACGCACGCAACAGTCGACCGCCCCTTCAAGTGTGACAAATGCCcgaaaagtttcatccaaaaagGCCAGCTGACATCGCACATGGGTCGTCACCAACTGTATCCGTGCACGCTGTGCGACAAAGTTCTCGCCGGAAAGGTCCTCAGCGCTCACATGGTCAACATGCACTCCGACGAAGGCCGAATGATCTGCGACACGTGCGGTCGCGAGTTCAAAACCAAGACCTGCTTCGACAAACACACAAAGCGACACATGGGCGTCGTCGAAGACACCAGCATAGAGTGCACCGAGTGCCACGAAATCCTCCACAACAAAGCGACCCTCAAGAAGCACATGATCGCCAAACACACGCAAACAAACGAGCAGCACATTTGCAACCAGTGCGGCAAGCAAGCGCCCAACAAGTTCGCCCTCGAATCCCACAAGCGGAAGGTGCACTGCGAGGAAAAGTACTGCTGTGAATTTTGCGAAAAGCGCTTCAAAAATCCGACGACCCTCAAGGAACACCGCGCCACCCACACCGGCGAGATCCTGTACCAGTGCTTGTACTGCACGACGACGTTCAACTCGAAGGCGAACTTTTACACGCACATCAAGAAGATCCACCCGGCCGAGTGGGAGCAGGAAAAGATGGCCAAGAAAACGCAGCGCAAGCTGCAGCGGCAGCAGCCGGGACCGTAG
- Protein Sequence
- MEKVANSCRLCLQPDVNNPSGLTDFATNSVDSAPLSDKLSSVFSFTLEKIDVLPKLVCGTCCTMVGDFHDFSERVQHNQEYLRMLVDQQEQVKQEAMDGDWDGEEVGRGTEVAPEIVKIEPELLPEGDSDGDNSEGENRLDESSESDSDFSEGDDDWTPQVTESREEEPVVRTKRKYTRRAPLKPKKEKKKPGHDPSKDYRNKPKEEIEEEDRLILEYFKFACELCHDPADTFIELRRHFREIHNQKGFHRCCNKKLFKRCHLLEHIQVHLNPNLYGCDLCSKSFSTKEYKELHWMQTHATVDRPFKCDKCPKSFIQKGQLTSHMGRHQLYPCTLCDKVLAGKVLSAHMVNMHSDEGRMICDTCGREFKTKTCFDKHTKRHMGVVEDTSIECTECHEILHNKATLKKHMIAKHTQTNEQHICNQCGKQAPNKFALESHKRKVHCEEKYCCEFCEKRFKNPTTLKEHRATHTGEILYQCLYCTTTFNSKANFYTHIKKIHPAEWEQEKMAKKTQRKLQRQQPGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401073;
- 90% Identity
- iTF_00401073;
- 80% Identity
- -