Cqui009073.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:214613128-214625281[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.074 2.1 8.7 0.1 2 15 315 328 315 334 0.89 2 7 0.02 0.58 10.5 0.1 2 21 398 417 397 418 0.94 3 7 1.3e-05 0.00036 20.6 0.6 1 23 501 523 501 523 0.97 4 7 0.0012 0.033 14.4 0.2 1 22 612 633 612 633 0.96 5 7 0.0046 0.13 12.5 2.3 2 21 644 663 643 668 0.94 6 7 4.4e-05 0.0013 18.9 1.0 2 21 753 772 752 773 0.94 7 7 1.3e-05 0.00037 20.5 0.6 1 21 781 801 781 802 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCGTGGTGCCGGATCTGCTCCCGGAGCGACGAGTTCCGGCGCTTTCCGCTGTTTTCCGTGGCGGACGTAAGCCAGGAGGTGATTGCGAAAATGATCACAAGCTGCACGGACACACAGGTCTCGAGCGAGGACGGGCTGCCCCAGCAGATATGTCCGGACTGTTTGATTACGCTGAGTTTGGCGTACTCGTTCCGGAGGTTGTGCCGCCGGACGGACGCAAAGTTTCGGGAGACGTTTGACCCAAGGGCGCCTGCGGAACATATGGCGACGGGAGGCAGCCAGCCGCGGCGATCACAGTCACAGGTTGGCCTGGATGAGAGTGGTGGTGGCGGGGTGGTGTACGATTCCGTTCCGGTGATTAAGGAGGAGGTTGAGTTTTACGAGTACGAGTGCAgtgcgccgccgccgccaccaccggaGGACCAGTGGGTCATTCAGAACCCGCGAACCATTCACGAGGCGACGGCGGGAGCCATGACCGTGCTGCACAATCCGGGTGGCCAGTATCAGGAAGAAGGAGGTGGCGTCGGCGAGCAGCCGGATGTAGACGACATGATGAGCTCGATGGTGCCGATGGTTACGATGGAGGAGGGCGGCGGCGGGATCGATCCGGCCGAGTACGGCGAAAGTTCCGGCAGCGGCCAACGCAAGAAAAAACACGAACCGGAACGATTCAGCAAGCGCATCCGACGACAGGAGAGTCCCACCTTGCACGATGGCGCGGCTGGTGCCGATCCGTCCCACTTCCTGGTGGCCATGCCCGATCCGGCGGGTAACGGTCTGCTGGAGGAGATCATCACGTCCGACGGGCAGCAGCTGGTCATCAATCCGGCGAAGCAGCTGCAGCGATGCCAGTACTGTCGCAAGAAGATGAAGAAGCCGTACAAACACCGCAACGGCAAGTGCATGGAGACAAAGAAGATGCCGGCGAGGCCACGGTGTCCGTACTGTCACATTGTCTTTGTGCGGAGTTCGAGCATTCCGTTGCACGTGCAGAATAGCTGTCGCGTGTACCGCGAGCTTTGTGCCACCAGCCAGGAACTTCCGGATCCTAATGAACCGGTTGAAGAACTGGAAACCGAGGAGGTCGCACCTCCGCAACCACCTTCGGTCAGGGTGAAAAACAACTCCAAGACCGTCGACGTGAAGCCCATCCTGCAAAAGTCCAAACCGAAATCGAGTCTCATCTGCCGGTACTGTTACATGTCCTTCGGGAAGCGCGCAGCTCTCATCAAGCACCAGCGCGACCGGTGCCGGGTACTGAACGAGCTGGACGTCGAGCGGTTGACCTCGAATCTGGCCGCGCTGGAAACGTCCATTGCCGATACGACGACGACCGCCCAGGAACCGGAACCGGAGCCAGAACGCGAAAAGGTCCAAGACGCTGACGACGCGGAAGAGACGACCTGCGTGTACTGCACGCAACTCGTCAGCAGGAAGACTCGCTTCCAGCATCACAACGGCCGGTGCGTGCTCGGACGGGCCAACGCAGACCATCCGTGTCCGTACTGCGATTCGGCGTACGCGTCCCGGAGCAACCTGCTGCGGCATCAGCGCGAGCACTGCCAAAAGTATCGCGAGGAGCACAACACGGACATCACCCTTACAAACGCCTTCCAAGGCTTGCCAGTGGAAGGGGACACGTCGCTGGACGAAACCGGTCCCAAGACTGTCGCAGAAGCCAGTTCCGCTGCCAAACCGGAAAGGAAACCAAAACCGCCAAAGGAGGAGGTCGTCTACGTCAAGCGAAAGAAACTCAAGCAAGTCACGACTCCGACGACTCCGACGACCAAGCCAACCAAGCGAACTCCCCCCGAACCGGCCAACTTTGTGTGCAGCTACTGCCGGAAGGGATTCGCCCTGCGGGACACGCTGATCGAGCACCAGCGATCGTGCACCGCCCGGAAGCTGCACAAGCAGGTCAAGTGTCAGTTCTGCGGAATGGTAATCTCGAATCGTGGGAATCTGCGCAAGCACCAAAAGTTGTACTGCAAGCATGCCCCTCGAGAAGACGCTCCAAAGCTGGAGCATTCGGAAGACGAGCAAGAGACGGTTCCAGAGCTTAAGAAACCCAAAATCGTCAAACCGCTCAAGAAAGTCAAGAAGGAGAAAGCGTCCAACGGACCTCCGGCGGAGGTCGACCAATCGACCAAAGAGGACCCCCCTCCCGAAGAAATCGCCCCACCCGCCAGCGACGATGAACCCGTTCTAAAGAGGAGGCCGGGCCGACCGGGCAAGCACAACCAGATCCCCTGTCCGCACTGCGACAAGACGTTCCAGAACCATCGCCAGCTGCGCAACCACGTGCGCGTCTGCGCCAAAAGTCGCAAAATGTACAAATGCAAGTACTGTCCGGCGGAGTTTACCCACCCGAGCAACATGAGCCGCCACATCCGGCTCAAGCGGTGCACGGCGGTGAACACGCTCAACGAAACTGTCGAGAACGGATTCCAGTCGGACAGCTGCAACCTGCTTAGTTCAACGGTGCACGAGCCGGACCCGCTAGTGGACCCGCCGGCCGACGAAGACTTTGAGATGATTCTGCCGGAATGTAGTCAGGAGGAGGAGCAGGCCATCCGGCCAGAGCTTGTAGAGAATAACAATGCGACCCCCCAACGGGAGGTCAAAGAACCGGACGTCGCAGAAGCAGACGAGTTGGTACATCCGGAGGCGATTCTCTACAGCGAGGAGATCGAACTGCAGCAGGAGCAACCTTCGGCGGCAGAGGTCCAACCGGAACTGACCGCGGCCACATTGGGCGCGGAGCAGGAGCAGGCTGGCCAGTAA
- Protein Sequence
- MESWCRICSRSDEFRRFPLFSVADVSQEVIAKMITSCTDTQVSSEDGLPQQICPDCLITLSLAYSFRRLCRRTDAKFRETFDPRAPAEHMATGGSQPRRSQSQVGLDESGGGGVVYDSVPVIKEEVEFYEYECSAPPPPPPEDQWVIQNPRTIHEATAGAMTVLHNPGGQYQEEGGGVGEQPDVDDMMSSMVPMVTMEEGGGGIDPAEYGESSGSGQRKKKHEPERFSKRIRRQESPTLHDGAAGADPSHFLVAMPDPAGNGLLEEIITSDGQQLVINPAKQLQRCQYCRKKMKKPYKHRNGKCMETKKMPARPRCPYCHIVFVRSSSIPLHVQNSCRVYRELCATSQELPDPNEPVEELETEEVAPPQPPSVRVKNNSKTVDVKPILQKSKPKSSLICRYCYMSFGKRAALIKHQRDRCRVLNELDVERLTSNLAALETSIADTTTTAQEPEPEPEREKVQDADDAEETTCVYCTQLVSRKTRFQHHNGRCVLGRANADHPCPYCDSAYASRSNLLRHQREHCQKYREEHNTDITLTNAFQGLPVEGDTSLDETGPKTVAEASSAAKPERKPKPPKEEVVYVKRKKLKQVTTPTTPTTKPTKRTPPEPANFVCSYCRKGFALRDTLIEHQRSCTARKLHKQVKCQFCGMVISNRGNLRKHQKLYCKHAPREDAPKLEHSEDEQETVPELKKPKIVKPLKKVKKEKASNGPPAEVDQSTKEDPPPEEIAPPASDDEPVLKRRPGRPGKHNQIPCPHCDKTFQNHRQLRNHVRVCAKSRKMYKCKYCPAEFTHPSNMSRHIRLKRCTAVNTLNETVENGFQSDSCNLLSSTVHEPDPLVDPPADEDFEMILPECSQEEEQAIRPELVENNNATPQREVKEPDVAEADELVHPEAILYSEEIELQQEQPSAAEVQPELTAATLGAEQEQAGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401115;
- 90% Identity
- iTF_00401115;
- 80% Identity
- -