Cqui008978.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:211082608-211084362[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.082 2.3 8.6 0.1 1 20 96 115 96 117 0.93 2 13 0.026 0.74 10.1 0.7 1 19 124 142 124 144 0.96 3 13 0.0099 0.28 11.5 1.7 2 23 175 197 175 197 0.92 4 13 0.052 1.5 9.2 2.4 1 21 205 225 205 226 0.94 5 13 0.16 4.5 7.7 0.2 1 21 233 255 233 259 0.91 6 13 5.9 1.7e+02 2.7 6.4 2 23 279 302 277 302 0.81 7 13 1.1 33 5.0 0.0 2 20 320 338 320 340 0.91 8 13 0.01 0.29 11.4 0.7 3 23 348 367 347 367 0.96 9 13 1.2e-05 0.00035 20.6 0.3 1 23 375 398 375 398 0.97 10 13 0.00035 0.0099 16.0 2.1 3 23 406 427 405 427 0.96 11 13 3.5e-05 0.001 19.2 0.5 1 23 433 455 433 455 0.99 12 13 0.43 12 6.3 1.7 1 23 461 484 461 484 0.92 13 13 0.0018 0.052 13.8 0.1 1 23 490 513 490 513 0.93
Sequence Information
- Coding Sequence
- ATGCTGAAGTCGAACTCAACGCCGGTTCAACCAAACATCACAATGCGACCTGTCCGAAGACCAGTTCAGCGAGACAATCCCGACCCCTTCATCTACCTGGAGGCTCCCAACGAACCGGTGGCCGAAATGGACCATCTGTTCCACCCCACCGAGGAGGCCCAGTTCTGGGAGCGACTGGCGTTCGCCGGAGTCACCTGCTGCTGCGAAAAGCTGCTTCAGAACGAAATCATGCTGCGGCAGCATCAATCGCGTCTTCACGCGGACGATGAAGTCAGCCGGGGTCGTTACAAGTGCATCGACTGCAATCGGTACTTTAACTCGCCCCTTCAGCTGTCGGAACATCTGGAGGTTCGCAAGGGCAAGGATTTCTACCGTTGCAAGATCTGCAACGTGTTGACCAAGCAATGGCAGCACCTGCAGCTTCACTTTGAGTTTACTCGGTTTCATCCGATTTTGGACGtttcagaggaggaacgactcaAGTTCGAAGAGGCCGTTGAAACGGTGACCAGTTCCGATGGGCGCTGTTGTGGTTGCGATCTTACGTTCTCAAGTGGCGAAGAGCTGTTCCGGCATACCAGCGAATCGCACCAGTCTGAGGAGCACATGCAGTTTGCGTGCACAATTTGTCACCAGAGCCACTCCGATTGGAACAGTCTTCACAAGCACCAGCAACTGTTCATCGGAGAAAGAACTTATCGATGTCGAGTAGCTGACTGTGGCTTCCAATCCGAATCTCGACAAACACTCAAGAAGCACGTGGACGTCGGAGTCCACGGCAGTCTGACCGATTTGCCTCAACCAATCAAGAAGGTGGAACCCATCCGATTCCACTGCTGCTTCTCGCTGTGCTCCAAAACGTTCGAAGAACGAGACGAATTGGACCGCCACTGCCGCGAGGAACACGCGGAACGACGTGCCTTCAACAGCATACACAGCAAGGACTCAACTCAAAACGTCTGCTCGCTTTGCGCTCGAGTCTTCCCCACGGACAAGCTCTACGCCAGCCACCTCGAATCGCTGACGGCTCCGAAGGCGATGTGCAGTACCTGTGGCAAAACCGTGTCCCGTTACGGAATCACCAAGCACATGCGACTTCACACCGAAGCTAAAAGCAAGAGCTTCACCTGCCAGGAGTGTGGCAAGGTCTACGCGACCAAGGTAGGCCTGCTCAAGCACGAGAAACGTGACCATCTCAACGAATTCCCTGAGGCTTGCCAGTTCTGCGAAAAGCGCTTCATCCTGAAGAGTGACCTGAAGCACCACATGGCGATGCGGCACACGCAGCATCGTCCGTACAAGTGCTCCCAGTGTGAGCTCGCTTTCGTGACCCGCCAGCAGCTGGCCCGACACACGGCAACGCACACCGATGAACGGCCGTACGATTGTAGCTACTGCTCGAACACGTACCGCCACGACGCCGATCGGAAGCGGCACGAGCAGGGAGTTCATCTCAACGAGAAGCACTTCAAGTGTGGGCTGTGCGACGCGGCGTTCGTCCGGGAGCGAGAATTGCGGCTGCACACAGGTTCCGTTCATAAGCGTTAG
- Protein Sequence
- MLKSNSTPVQPNITMRPVRRPVQRDNPDPFIYLEAPNEPVAEMDHLFHPTEEAQFWERLAFAGVTCCCEKLLQNEIMLRQHQSRLHADDEVSRGRYKCIDCNRYFNSPLQLSEHLEVRKGKDFYRCKICNVLTKQWQHLQLHFEFTRFHPILDVSEEERLKFEEAVETVTSSDGRCCGCDLTFSSGEELFRHTSESHQSEEHMQFACTICHQSHSDWNSLHKHQQLFIGERTYRCRVADCGFQSESRQTLKKHVDVGVHGSLTDLPQPIKKVEPIRFHCCFSLCSKTFEERDELDRHCREEHAERRAFNSIHSKDSTQNVCSLCARVFPTDKLYASHLESLTAPKAMCSTCGKTVSRYGITKHMRLHTEAKSKSFTCQECGKVYATKVGLLKHEKRDHLNEFPEACQFCEKRFILKSDLKHHMAMRHTQHRPYKCSQCELAFVTRQQLARHTATHTDERPYDCSYCSNTYRHDADRKRHEQGVHLNEKHFKCGLCDAAFVRERELRLHTGSVHKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -