Cqui007718.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:166689157-166691086[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.77 22 5.5 3.0 2 23 209 231 208 231 0.93 2 11 0.017 0.48 10.7 0.3 2 22 247 267 247 267 0.95 3 11 0.00012 0.0034 17.5 1.0 1 23 274 297 274 297 0.96 4 11 0.17 4.7 7.6 3.9 1 23 314 337 314 337 0.89 5 11 0.0015 0.044 14.0 1.3 2 22 350 370 349 370 0.95 6 11 0.0057 0.16 12.2 1.9 1 23 377 399 377 399 0.95 7 11 2.4e-05 0.00067 19.7 3.9 1 23 405 427 405 427 0.98 8 11 6.5e-05 0.0018 18.3 2.4 1 23 434 456 434 456 0.97 9 11 0.041 1.2 9.5 2.6 1 23 464 486 464 486 0.88 10 11 0.001 0.029 14.5 3.5 1 23 492 515 492 515 0.97 11 11 0.00015 0.0043 17.2 4.5 1 23 521 543 521 543 0.98
Sequence Information
- Coding Sequence
- atggATCCCAACGCCAGCATCGATGTTGAATATAAAGTTTGTCGAATTTGTGTTCAATCCACCGTAGAAGATAGCTATCCCCACAATGAACTGTACGATGAAGTCAGCGTCGAAACGATGCTCAAGGAAGTGCTAGAGAAGTTGCAGattcctgACGATGAAAACCTCGCTGTACGATGCTGTAGCTCTTGTAGAGAAGAGCTCTGGATTACCTAtcgcttcataaaaaaattggaGGACGCCAACAATAAGATCAAGAACCTCGAGCATTACGTTGTGGAAGCTGACAAaagTGATCCCTTGACGGAATCTCCTAGTAAATCACAAATAGATGTTAAATTGGAATATGAGGTAGAAGATTACTCAACGTATGAACAAGAAAACACAAATGATTTTGATGAAACAGACAGCGATGATAAACCATTAATGCAACGGCGAGCGAAGCGCAAACCTGGAAGAAAACGCAAGAAAGTCAAAACTGATCCAGAAGACTCTGATGAGAGCGAATACTCACCGAAACATGAGCAAGAGGAAAACTCATCAGCATCCGAGGCCGAGGAAAAGGAGGAACTAACTAAACACAAACGAACTCGATACGCAATCACGGCCAATTCGCAACCGAAGCGATGCTGTGGCTGCAAGGAACCCGTCAGCACGCACGAACAGCTGGAAGAGCATTCCGAAAAATTCCACCAGCAACGAGCGTTCGATGCTGAGATACTCGAACAGAAGCCGGAAGAGTGTTCGATATGTTACGAGAGGTTTGAGACGAGAATGGAACTCCTTCTGCACCGCAGAAAAGCTTTTGCTAAAGAGTTACACTCGTGCAAAAAGTGTCCTGCCGATTTCGCGAATGCTTACAACCTGAGAGTTCATTTGAAGAACAACCACAAGCGGGAGAAAATCGTGAAACAAATCGACGAAATCCGCCAAAAAGTGCACATTTGCTGCAAATGCCACAAACAGTTCGAAACTAAAGAACTGATGATAGAACATGGCAACGCGGAGCACAAAATGCGCCATCCCCCGGATACGGAGAACCAGATCGAGTGTGAAGTCTGCCATCGTCGGTTCAAGTCGGAGCACGTACTAACCGAGCATCAACGCAGACCGTATCGGGCTCACCGATACCAGTGTGCACACTGCGGAAAAACTTTCCAAGAAAAGCAGGTATTTCTGGACCACGAGCAAAGCCACGCCAACATCCGGCCGTACCAGTGCCACATGTGTCCAAAGTCCTTTTCGCTGAAAACCAACTACGTTACCCATATAAAGTACCACTCCCTGCCGAGCGATTACTTCAAGTGCGACAAATGTGGCAAAGGGTTCAAGAAAAAGCATCTCTGGCAAGACCATCAGGTCATTCACATCGAAAGCGCAGAACGACCCTTCAAATGCCATCTTTGTCCCAACACATTCACCCGCCAACAACTGCTGGATTTCCACGTGAAGGAACACCTTGGGGCAAAACCGTTCAAGTGTACAAAGTGTACCTCGTCCTACATCCACGAACGGGACTTGCGCAGGCACATCCGGGCTAAACACGAACCTATCGTACCGTTTAGTTGCGAACTTTGCTCGAAAGAATTTCACCGGAAGGATGCTTACAAAAAGCATCTGAAGACTCACGAAGATGAGGAGGCGAAGAATTTGGGATGTCAAATTAAATTGTAA
- Protein Sequence
- MDPNASIDVEYKVCRICVQSTVEDSYPHNELYDEVSVETMLKEVLEKLQIPDDENLAVRCCSSCREELWITYRFIKKLEDANNKIKNLEHYVVEADKSDPLTESPSKSQIDVKLEYEVEDYSTYEQENTNDFDETDSDDKPLMQRRAKRKPGRKRKKVKTDPEDSDESEYSPKHEQEENSSASEAEEKEELTKHKRTRYAITANSQPKRCCGCKEPVSTHEQLEEHSEKFHQQRAFDAEILEQKPEECSICYERFETRMELLLHRRKAFAKELHSCKKCPADFANAYNLRVHLKNNHKREKIVKQIDEIRQKVHICCKCHKQFETKELMIEHGNAEHKMRHPPDTENQIECEVCHRRFKSEHVLTEHQRRPYRAHRYQCAHCGKTFQEKQVFLDHEQSHANIRPYQCHMCPKSFSLKTNYVTHIKYHSLPSDYFKCDKCGKGFKKKHLWQDHQVIHIESAERPFKCHLCPNTFTRQQLLDFHVKEHLGAKPFKCTKCTSSYIHERDLRRHIRAKHEPIVPFSCELCSKEFHRKDAYKKHLKTHEDEEAKNLGCQIKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -