Cqui003035.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:118520549-118522473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0064 0.18 12.1 0.3 1 23 213 236 213 236 0.95 2 11 0.0029 0.083 13.1 0.4 2 21 253 272 252 273 0.93 3 11 0.012 0.35 11.2 1.5 1 23 278 301 278 301 0.98 4 11 3.1 88 3.6 0.4 3 21 314 332 313 335 0.88 5 11 0.14 4 7.8 0.8 1 20 348 367 348 369 0.93 6 11 0.00034 0.0096 16.1 0.1 1 23 377 399 377 399 0.97 7 11 4.2e-05 0.0012 18.9 0.4 1 23 405 427 405 427 0.98 8 11 0.00014 0.004 17.3 2.1 1 23 434 456 434 456 0.95 9 11 0.0035 0.099 12.9 0.0 1 23 462 486 462 486 0.97 10 11 8.4e-06 0.00024 21.1 0.5 1 23 492 515 492 515 0.92 11 11 0.03 0.85 9.9 1.1 3 23 523 544 521 544 0.94
Sequence Information
- Coding Sequence
- ATGCCCAAACCCTCCGGCAAGCGTCCCCCAACACGTGGCCGCCGCAAAGCAAACCCTCCACCCAGCGCCGCGTCCTCCGACTCGGGCTCCCTTTGCCGCGTTTGCGCCAACTGGTTCCCGGACCAGTCGGCGATGATCGCCCTCGGCAGTCGCACCGTCCTGCGGGACGTGTGCACGCCGGCGGAAGCGATCGTCGCGATTGGTGGGTGGTCCGGTGAGGAGGAGCAGCGCGAGCACGACGGGTTGCCTCAGTTTTGCTGTGAGGCGTGTTTTGGCCAGCTGGAGGTGGCGTACGGGGTGCGCAGGATGTGCCGCGAGTCGGACCGGAAGTTGAGGAAGATGCTCGCGGGGGAGGTTAAGGAGGAGGAGGTGAATCCGCTGGATGCGGTCGAGGTGGTTTGTAAGGTGGAGGAACCGGAGGAGGTCGCTATGGAGGAGATAGAGATCAAGAACGAACCGGTTGTGGAAGACAACGAGGATCAGAATGACGACGAGAATACCATGGATAACGACGGATCTGGGGAGAACGTTGAGGAAAACTCAAACGAGGAATCTGAGTCTGCAGAGCAATCGAAATCGAAACGCGCCAAGTTACTGATCAGCGAAGATCTCTACGAAGAAGTAGAGGCGATGGCGTTCCGTTGCTGCGGTTGCTGGCTACCGTTTGAAACGCAGGACGAGCTGTACGAGCACGGACAGGTCGATCACATCTCCAAGAAACTTTCCAGCGATGAGTTGGACCGAAAAAAGTGGGTCCAATGCGACATCTGCTACAAGACGCTACGGAGCGCCAAGCAGTTGCTCAGACATCGATCAAAGGACAAGTTTGAGTACCGCTGTAAAACGTGCGGTGACACGTTCATCAACCGGGTCCGGGTGAGCACTCACTACCGCACAATGCACGGGCCACACGCGAACGTAAGCGGGACAACGCGGATCTGCTGCGGCTGTTCACTGCATCTTTCGTCGCCAGAAGCCCTGTCAGCACACAGCGAAGCCGTTCACCTCCCGAATCGTCCCGCGCCGAACCCGGAACGTCCGTTCGTGTGTGACATCTGCTACCACAACTTCCCGCACGAGCGAGGCCTGTGGGACCACAAAACCCGACTCACGTCCAAAGTCAAAAAGTACCAGTGCTCCCAATGCGGCAAACAATTCTTCTACCCCGGAGGTCTAGCGGATCACGAGGTAACCCATCTCGGCGAGAAGGTCTTCCAATGCGCCCAATGTCCAGCGTCCTACATAAGTCGCGAGTCGCTGCGCAAACACATGCAGCAGCACGCGATGCCCGAGGACAAATACAAATGCGCGGAATGTGGCCGCTGCTACCGCTCTTCCAGAGCTCTCCGAGAGCACACCTTCGCCCACACCGGCGAGCGCCCGTTCGTCTGCTCGTACGACGACTGCACGGCGGCGTTCGCCCGGGAATCCGGCCTGGCCATACACACGCTGACGCACACCGGCCAGAAGGACTTTGAGTGCAACATTTGCGGGAAGCGCTTCGGCGACAGTTCCGGCCTGCGGCAGCACGTGAGCTTCTACCACAAGAAGGAGCGACCGTTTGGGTGTTTCTTCTGCGAGCGGCGCTACCCGCGCAAGGACTACCGCAAGCGCCACATGGTGAGTGCCCACGCGGCCGAACTGGCCGCCAATCCGCTGCCCGCGATCGAACTTGGCCGGAATAAATAG
- Protein Sequence
- MPKPSGKRPPTRGRRKANPPPSAASSDSGSLCRVCANWFPDQSAMIALGSRTVLRDVCTPAEAIVAIGGWSGEEEQREHDGLPQFCCEACFGQLEVAYGVRRMCRESDRKLRKMLAGEVKEEEVNPLDAVEVVCKVEEPEEVAMEEIEIKNEPVVEDNEDQNDDENTMDNDGSGENVEENSNEESESAEQSKSKRAKLLISEDLYEEVEAMAFRCCGCWLPFETQDELYEHGQVDHISKKLSSDELDRKKWVQCDICYKTLRSAKQLLRHRSKDKFEYRCKTCGDTFINRVRVSTHYRTMHGPHANVSGTTRICCGCSLHLSSPEALSAHSEAVHLPNRPAPNPERPFVCDICYHNFPHERGLWDHKTRLTSKVKKYQCSQCGKQFFYPGGLADHEVTHLGEKVFQCAQCPASYISRESLRKHMQQHAMPEDKYKCAECGRCYRSSRALREHTFAHTGERPFVCSYDDCTAAFARESGLAIHTLTHTGQKDFECNICGKRFGDSSGLRQHVSFYHKKERPFGCFFCERRYPRKDYRKRHMVSAHAAELAANPLPAIELGRNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400957;
- 90% Identity
- iTF_00400957;
- 80% Identity
- -