Cqui011606.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:82154621-82157334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.8e-05 0.0028 17.8 1.0 2 23 275 296 274 296 0.97 2 13 0.00019 0.0053 16.9 0.2 1 23 302 324 302 324 0.99 3 13 0.36 10 6.5 0.4 2 23 335 356 334 356 0.87 4 13 1.3 37 4.8 0.0 10 23 401 415 398 415 0.87 5 13 0.088 2.5 8.5 3.6 2 23 422 443 421 443 0.95 6 13 3.2 92 3.5 0.1 1 10 449 458 449 462 0.86 7 13 0.0014 0.039 14.2 4.8 1 23 477 500 477 500 0.95 8 13 0.00028 0.008 16.3 0.3 3 23 507 527 506 527 0.97 9 13 4e-05 0.0011 19.0 0.7 2 23 533 554 532 554 0.94 10 13 0.00035 0.0099 16.0 1.0 2 23 563 585 562 585 0.95 11 13 0.00019 0.0055 16.8 1.7 3 20 593 610 592 611 0.94 12 13 1.6e-05 0.00045 20.3 0.5 1 23 619 641 619 641 0.97 13 13 0.0068 0.19 12.0 2.1 1 23 647 670 647 670 0.97
Sequence Information
- Coding Sequence
- ATGCCTGGAAATGTTTGTAAAGTGTGTCTGGTGGAGAATGCTCCGCTGTACTTGGATATATATGCTGAGAGCAATGTAGAGAAAAATATATCTACTATcatatcaaaatatttatgGTTTGAGgTTACACCTTCAAACGAACAACAATCAATTTGCGACGAATGCTGGAACTCACTGTACAAATTTCACCAATTTTACGAAAAGGTGGAGCAAGTCCATTACTGTACCAAGGATGATATTGGCAAGCTTGAGTTACTGGACAATGATCCGTTCGGCGCTACCGAAGATCACTTTGGCGATGAGTCCAGCGACGAGGATCGCACGGAGTTATTTGAGTTGGTTAAAACGGATCCGGTTGTTGTCGTGGATGAAAACGAAACTCTTTTGAAGCGGGACGCACTGGAAGAAACGCAGGCAACAAGAAGATCAACCAGGATTAGGAAAGGGAAAGATTCGGGGAAGGAAGCGATCGTGCCTATAAGATTTACTAGGCGAAGTAATGCTCAGATCGAATACAAGGCTGAAAGTCCTTCGTCTGAAGAGGATGCAAGTGACCGATCGGAATGTAAGGAAGCGGTCAAGATTGAGGGTTCTGAGAGAAAGCGGAAACATTCTACAAGCAATGATGAAGAAATAGAAGATTCTAACAGTGACGAGGAGGTGGCACCTAAGTCTGAAAGAGCAAAGCGTAAGAAAGATCCAAAGTTGTTTGCGCACATTGAAGAATTTATATGCTATTTGTGCCCGGAAAGGGTTGAGTTTGATAGATTTTACCATGCCACGGTGCATTACAAAAAGTTTCACAACGAACCGGCTTATATCAAGTGTAAGATATGCGACAAACGATGTTACACGCCCGGGAACTTTATCAGCCATTTAGAGGTCCATGAAGATCCGGACAAGTACAGATGTCAGATTTGCGGCAAGCAGAACGATCAGCAAGTGGCACTGGCCAAACATATGCGCATCCATCGGCCGGAGTTGGAGGAAAAGTTGCCCATTCGGTGCAGTTTGTGTCCGCGTAGATTCGCTACGGAGCAGAAACGCGACAGGCACGAGCTGGACCACGATCGAAAGCCGGCGGAGAAAATGGCTCGGATTGTCGGCCGAGACGAGGAACTGTTGGAGTTTTACAAACGGTTTGGGTGTGAAATCTGCGACGTAAGTCGGTTGACCGACCCGAGCGTTCCGGAAGCGGACTTTGACAACATGCAGGATCTGAAGAGGCACATGCGAGATGAGCACAACGACAAGGGATACCTAAAGTGTCACCTGTGCGAGAAGAAGTGCAACATCCGGTCGATGCTGGTTATCCACATGGACTTTCATCTCAATCCGGAAAAGTATCGATGCGATGTGTGCGGAAACATCTTCCAGAACCTTCCGAAGCACAAGGAAGGCGCCCACGCAGCACCTGGCGAAGCTACGTTCTGTTGCGAGCACTGTGGAAAGTCTCTGACGAgcgaaaaaagtttgaaatcccACGTGGAACGGAAACACGCGGTGAAGGACGTGTTCTGCGACATTTGTAACAAACCATTCAGCAAAAGCACGCTGGAAGCCCACAAACGCGTCGTCCACACGCTTCCATCGCTCATGTGCACAAAATGTCCGAAAATGTTCCGCAGCAATTTTGCGCTGAACCGACACCTGGACGAGCACGAGGACAAGGTCAAGGAACGGGTCAAGTGCAGCATCTGTGGGGTCACCTTCAAACACAAGTACATCCTGACCAAACACATCGATTCGGTTCACACAACCGAGGCTCCGGTAGCTTGCGATGTTTGCGGTAAAATGTTCAAATCGAAGCATCATTTATGGAGCCACAAATCGGACACGTGCAACACTCGTCGCTTTGATTGCACCATTTGTGGACGTGTGTTTAAGGTCAAAGTCCGCCTAAACGAGCACATGACCACCCACACGGGAAAGTCCCTATATCAGTGTACGTTCTGTCCGCTGACGTTCAGCTTTCAATCGATTCTCTACACGCACCGCAAAAAGGCCCACTACGAGCAGTGGCTGGAGCTGCAGCAGCAGCGAGAAGAGGGCGTCAAGTTTAAGGTTCTGGAAGCGCCGTCTTAA
- Protein Sequence
- MPGNVCKVCLVENAPLYLDIYAESNVEKNISTIISKYLWFEVTPSNEQQSICDECWNSLYKFHQFYEKVEQVHYCTKDDIGKLELLDNDPFGATEDHFGDESSDEDRTELFELVKTDPVVVVDENETLLKRDALEETQATRRSTRIRKGKDSGKEAIVPIRFTRRSNAQIEYKAESPSSEEDASDRSECKEAVKIEGSERKRKHSTSNDEEIEDSNSDEEVAPKSERAKRKKDPKLFAHIEEFICYLCPERVEFDRFYHATVHYKKFHNEPAYIKCKICDKRCYTPGNFISHLEVHEDPDKYRCQICGKQNDQQVALAKHMRIHRPELEEKLPIRCSLCPRRFATEQKRDRHELDHDRKPAEKMARIVGRDEELLEFYKRFGCEICDVSRLTDPSVPEADFDNMQDLKRHMRDEHNDKGYLKCHLCEKKCNIRSMLVIHMDFHLNPEKYRCDVCGNIFQNLPKHKEGAHAAPGEATFCCEHCGKSLTSEKSLKSHVERKHAVKDVFCDICNKPFSKSTLEAHKRVVHTLPSLMCTKCPKMFRSNFALNRHLDEHEDKVKERVKCSICGVTFKHKYILTKHIDSVHTTEAPVACDVCGKMFKSKHHLWSHKSDTCNTRRFDCTICGRVFKVKVRLNEHMTTHTGKSLYQCTFCPLTFSFQSILYTHRKKAHYEQWLELQQQREEGVKFKVLEAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400929; iTF_00400941;
- 90% Identity
- iTF_00400929; iTF_00400941;
- 80% Identity
- -