Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:166671381-166673178[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.0066 16.6 0.4 1 21 241 261 241 262 0.97

2 10 0.0009 0.026 14.7 0.4 1 23 269 291 269 291 0.97

3 10 0.48 14 6.2 0.8 2 23 304 326 304 326 0.90

4 10 0.63 18 5.8 1.0 1 20 341 360 341 362 0.87

5 10 0.0034 0.096 12.9 4.5 1 21 369 389 369 391 0.94

6 10 0.00012 0.0034 17.5 0.8 1 23 397 419 397 419 0.98

7 10 4.4e-07 1.2e-05 25.2 1.4 1 23 426 448 426 448 0.98

8 10 3.2e-05 0.0009 19.3 2.7 2 23 456 477 455 477 0.97

9 10 0.00011 0.0033 17.6 0.7 1 23 483 505 483 505 0.97

10 10 6.3e-07 1.8e-05 24.7 0.2 1 23 511 533 511 533 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.0066	16.6	0.4	1	21	241	261	241	262	0.97
2	10	0.0009	0.026	14.7	0.4	1	23	269	291	269	291	0.97
3	10	0.48	14	6.2	0.8	2	23	304	326	304	326	0.90
4	10	0.63	18	5.8	1.0	1	20	341	360	341	362	0.87
5	10	0.0034	0.096	12.9	4.5	1	21	369	389	369	391	0.94
6	10	0.00012	0.0034	17.5	0.8	1	23	397	419	397	419	0.98
7	10	4.4e-07	1.2e-05	25.2	1.4	1	23	426	448	426	448	0.98
8	10	3.2e-05	0.0009	19.3	2.7	2	23	456	477	455	477	0.97
9	10	0.00011	0.0033	17.6	0.7	1	23	483	505	483	505	0.97
10	10	6.3e-07	1.8e-05	24.7	0.2	1	23	511	533	511	533	0.98

Sequence Information

Coding Sequence: ATGATCGAAACGGAATGTTGTGTAAACAATCATCAGCAGGTAGTGCGTTTGCTTGTGTATTTatcatttgttttggttttatctGATAAAAAAATGGAAGCAAAACAAAGTCCCTGCCGGATTTGCTTCGTATCATTGGGAGAAAACATTTCGTTGAGTCATTCCTTCAATGGAAGCTCGCTCATTGAGATGTTACGTTGCTGTGTTAAACTAGAGGTTCACGAAAACGATGGTCTTCCCTACGAATGTTGTAGAAGCTGTAAAGACGATCTGTTGGTTGCTTACAGCTTGGTGGTTAGATTCCTTGAATCGGATACCAAATTTAGGAAACTGTTAGAAGATACGTCTTCTGTTGAGAGGATATTAGAAAAAGAGTCTCGTACGGATTGTTCGTTTAAATCGGAGTACAAACTTGGTGAGGAACTTGTCTATGTCGAACCATTTGTGGATACTAGTAACGATGCCGTGGAAAACACAGCAATCAAAAACGAATCGGCAGAAAGTTCTGAAGATGAAGACGAATTCGATGCGCTTAGCGACGGTGAAGATCATGAAGTGCAAGCAGAGGAAGTCAGAGTTAAACGAACAAACTACTCTTCAATACCTAAACGATGTTGTAGGTGTAAAACGCGCCTGCACAGTATCGAGCAGGTCCAAGAGCACTCCAAAATACACGAGGAATCCAAAATCACAGATCCTCGTCGAATCAAATTACGTCCCTATGAGTGCCCGAACTGCTACAAACGGTACACTAAACAGCGAGCTTTGGAGCTTCACCAACGCGAGATGTACGCCGATAAGGCTTTTGAGTGTGACGAATGTGAAGAAGACTTCCATTCTGCATCCCAACTAGAAGAACACAAGGATAGCCACGGAAAGGAAAAGGTTCCCAAGAAAGGACCTTTTCCAAAATGCTGTGCATGCTACCAACAGTTTGAATCTGAAGATCAGCTCAGAGCACATGGGAACGAAGTCCATCTGCCTGAAAGTCAGAAGAGTTCAAGCGAAAACGAGAACCAGTTCAGCTGTGACGTGTGCTACCGTCGGTACAAATCCAAGCGTATCCTCATGGATCACAAATCAAAGCCATACCGGACAAAGCAGTACCAGTGTTCGCAGTGTGGAAGGATCTTCCGCGATAAATGTGCCCTCTCAGACCACGAACGGTGTCATCAGGGCGAGCGACCGTTTGTTTGTGCCGTTTGCTCGAAAACGTTTGCCATTAAGGATTCCTTCCGGAAGCACGTGAAATCGCACTCGATCGAAGAGGATCGCTTCAAGTGCGAGATATGCCAGAAAGGGTTCAAAACCAAGGGAAATCTGAAGGATCATTACATAACACACGCGCCCGACTATCGGCCGCTCAGTTGCACCCTTTGTTCGGCCACTTTTGCGCGTAAGTCTTGCCTGAACTCGCATATGCGGATGCACACGGGAGAGAAACCGTTTAAATGTGACCAGTGCGATGCTAGCTACGCATTCTCGACGGATTTGAAGCGGCATCGTATGGCCCATCAGGGAATTAAGCCGTTTGTTTGTACAATCTGTGGGCGCGGATATCCGCGGAAGGACTATCTGCGTAAACACATGGCTATCCATTTGACTCAGACGTGA
Protein Sequence: MIETECCVNNHQQVVRLLVYLSFVLVLSDKKMEAKQSPCRICFVSLGENISLSHSFNGSSLIEMLRCCVKLEVHENDGLPYECCRSCKDDLLVAYSLVVRFLESDTKFRKLLEDTSSVERILEKESRTDCSFKSEYKLGEELVYVEPFVDTSNDAVENTAIKNESAESSEDEDEFDALSDGEDHEVQAEEVRVKRTNYSSIPKRCCRCKTRLHSIEQVQEHSKIHEESKITDPRRIKLRPYECPNCYKRYTKQRALELHQREMYADKAFECDECEEDFHSASQLEEHKDSHGKEKVPKKGPFPKCCACYQQFESEDQLRAHGNEVHLPESQKSSSENENQFSCDVCYRRYKSKRILMDHKSKPYRTKQYQCSQCGRIFRDKCALSDHERCHQGERPFVCAVCSKTFAIKDSFRKHVKSHSIEEDRFKCEICQKGFKTKGNLKDHYITHAPDYRPLSCTLCSATFARKSCLNSHMRMHTGEKPFKCDQCDASYAFSTDLKRHRMAHQGIKPFVCTICGRGYPRKDYLRKHMAIHLTQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400953;
90% Identity: iTF_00400953;
80% Identity: -