Cqui005387.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- topi
- Assembly
- GCA_015732765.1
- Location
- NC:67717569-67729435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.8 1.4e+02 3.0 2.5 1 21 261 283 261 284 0.89 2 14 0.028 0.79 10.0 1.0 1 20 310 329 310 331 0.91 3 14 0.00039 0.011 15.9 0.9 2 23 343 364 342 364 0.97 4 14 0.037 1.1 9.7 1.1 1 19 370 390 370 393 0.94 5 14 0.0036 0.1 12.9 0.0 3 23 401 421 400 421 0.97 6 14 2.7e-06 7.6e-05 22.7 2.1 2 23 428 449 428 449 0.97 7 14 2.5e-05 0.00072 19.6 0.0 1 23 455 477 455 477 0.98 8 14 8.7 2.5e+02 2.2 2.2 3 23 485 506 483 506 0.91 9 14 0.032 0.92 9.8 0.2 1 20 769 788 769 790 0.93 10 14 0.00043 0.012 15.8 1.5 1 23 803 825 803 825 0.98 11 14 0.0028 0.081 13.2 0.0 3 23 862 882 861 882 0.97 12 14 5.3e-05 0.0015 18.6 2.9 1 23 887 909 887 909 0.97 13 14 7.6e-05 0.0022 18.1 0.1 1 23 916 938 916 938 0.98 14 14 1.9 53 4.3 6.2 1 23 944 967 944 967 0.94
Sequence Information
- Coding Sequence
- ATGGCAAAGCAGAAAACTCAAATACTTAGTCCAAATTTGTTGGTCCCTTTGCCCTCGGCGGCTCGGCAAGACACCACAGTTCCGGAAACATGTCCGGAGCCCACCGCCACCTACAACCTCACGGAACCGCTGCTGGAAATATTCAAAGAGGAGCCCCAGCTGGAAATTTTCGAGGAAGAACCACCCATGCTGGACATCCCGCCCGACGCGCTCGAACCCCTAATCGAAGTCATACTCGTACCAAAACCGGAACCACCCATTCCCACCGACACCGATCCCTTCCCGGAAGTGGGCCTCTTTTGCTCCCTCTGTCTACGTCCATGCACCTCCGACCAGGTGGTCGAGCTCTCCGCCAAACCGAGAGGACGGGACAAGTTGGCGCTACTTTTGGGCGTGGAGATTGAGGTTGAACAGAATGCCATTTGCCGGTCCTGTTGGATCATGGTGGAAACGTTTGCGGACTTTCGGGAGGGTTGTCTGAAGGCGGCTGCTTGGAGGGTGCGATTTTCGTTTGGGTTGGACGAGATTGGGGACGATTGGTTGTCCAAGGAGAACGTGGAGGTGATGGCGAGGACGCGAAAGGTGGTTCAGGAACACGTGGAACGCATTGAAATGGCCGAGGCTGAGGCGCGGAACAGGCAGGATTCGAGTGCGAATGAGTTGCCGGAAGAGAAGCCAGCGCTGAAAGATGAACATGATTGGGTGGAGGACGCGAGCTATCCAGATTCCCCGGAGGGACCGCCTAAGAAAGAGTACATTGAATTGTCCAgcATCAAACCCTACGAGTGCCGTAAAAGAGATTGCAACAAACGCTTCCATGTTTACAATCAACGAGCTAAACACGAAAGAAAGTGCAAGGGAAAACAGTCGTTGAATTCAAGTGTTGATCAGGAATCATCAGCTGCCGAGGAAATAATACTGAAAGTTCACCCGTGCAGTAAATGCCCAAGGAGATTCGACACCAAAGCCGGGTTCCTGACGCATAACCAAAAGTGCAAAGGACCTGTTGAGAGCCCTCAGCTTAGCCGCTGCTCAATCTGCTCGATGGAGTTTCGCTTTCCAAAGAAGCTTGAAGTGCACATGAACAAGCACAATGGAATCAAACCGTTCAAATGCCGCACTGAAGGCTGCGACAAGCATTTCTACGGCAAAGTTGCACTTAACCGACATGCGGAGCATTGTGGCAGGGACAAACCGATTTGTCCGCTGTGCGGACTCCAGCTGTCCTCGAGGGGAGGGCTGAACGCGCACTTGAAAATCCACGCCGGAGAGCCCGCCGCCGAGTGCGACACGTGCGGGAAAAAGTTCAAGTCTAAAAAGAGTCTCACGCGGCACCAGCTGGTCCATTCGGACGAGCGGAACTATCCGTGCGACGAGTGCGGGAAGGCGCTCAAGTCGGCGAATGCACTGACCGTGCACCGGCGGATTCACACGAAGGAGAAGCCGTTTGGTTGTGTCATTTGTGGGCAAGGGTTCGCGTACAAATGTTTGGTGAAGCCGCACGTGAAGAAGTGCCACGCGGGAGAGGATAAAAAAGCCCGACTAGCGCAGATTGATCGATGGAAGAAAATTAAACAGGCCCAGCTACAGGATATTGAAAAGATTAAAAAGGAAGAACCGGAACAGGTTCCAGAGCAATGCTTGTACGAAGCTTTCCAGCAGTGCAACTTCGAACCTGCACCGGAACTGCAACAAGTGGTTAAAACGGAATCAATCGAAATTTTCCACGAACTACTTCCCCCGGAAGAACCACCCGCAGAAACTCCCGAAACCCCATTCTGCTGCCTCTGCCTCCGAATCTACCATCCGGCCAAGTTTGTCCAGTTCTCGCCCCAGCAGTCGTGGAACTGCCTGGACGTGGTCCAGGTCCAGGAGCAGCTCACCAGTGTGCTGGGCCTCGAAATTGACCTCACCGAGCACGTAGCACGTGTTTGCCGATCCTGCTGGGCCCTCACGGAACTGTTGGCCGACTTTCGGACGTGCTGCATGAAGGCCGCCGAGTGGCGTGAGCGGTTTAGCACGGGGATCGAGACCAAGGAAACGTCCAGGGAAGGTTGGCTCAAGAGGGCTGCGGTGGACGTAGTGGCGAAAACGAGGATGATCATTGTGGACCACGTGGAGAGGATTGAGCAGGCGGAAATTAAGGCGCGGAATGAGGCGGAGCAGATTGCTGGACCGGATAAGGATTCGTTTCAAGATGGTCTGGAAAGCGTGGTTGACCAATTGGATGCAACGGAAGATAACAAATCCAAAATCGTTGAACAAAGCGTTGAAATGGTCGAAGAAATTCGGGAAATCGAAGTCCATTCATGTCCAAACTGCGAGAAGAAGTTTGAAGGCAAAAATAGCATGATTATTCATTTGCATTACTGCAAAAAAACCGCTCCAAATAAGTCCAAAAAAAGGTTCACGTGTTCGATCTGCTTTGCTGATTTCAACTATCAAAAAAACTTACAAGATCACCTCAACAAGCATAAAGgtATCAAACCGTACAAGTGCCGCAGGGAAAATTGCAATCACCATTCCTACACCGTTAAGGAGCGGATCCATCACGAGAAAATATGTGGCAAAGATAAGCCAATCTGTCCGGAGTGTGGCCTTCAGTTGGCCTCACCGGACACCTTGAAAGCCCACTTGGGAACCCACCGAGCGGCGGCCCACCCCTGTGATATCTGCGACAAGCTGTTCAAATCAAAaaaaactctcaaaaaacACCGCTTGATCCACGCCGAAGATCGTGTTTATTTCCCCTGCAGCGTGTGCGAAAAGTCGCTGAAATCGATGGCAGCGCTGCGCGTGCATATGCGCATTCACACACAGGAAAAGCCCCACGCTTGCCACATCTGCGGCCAGGGATTCGCGTACAAGTGCTTGGTTAAGCCGCACATTAAGAGGTGCCACTAG
- Protein Sequence
- MAKQKTQILSPNLLVPLPSAARQDTTVPETCPEPTATYNLTEPLLEIFKEEPQLEIFEEEPPMLDIPPDALEPLIEVILVPKPEPPIPTDTDPFPEVGLFCSLCLRPCTSDQVVELSAKPRGRDKLALLLGVEIEVEQNAICRSCWIMVETFADFREGCLKAAAWRVRFSFGLDEIGDDWLSKENVEVMARTRKVVQEHVERIEMAEAEARNRQDSSANELPEEKPALKDEHDWVEDASYPDSPEGPPKKEYIELSSIKPYECRKRDCNKRFHVYNQRAKHERKCKGKQSLNSSVDQESSAAEEIILKVHPCSKCPRRFDTKAGFLTHNQKCKGPVESPQLSRCSICSMEFRFPKKLEVHMNKHNGIKPFKCRTEGCDKHFYGKVALNRHAEHCGRDKPICPLCGLQLSSRGGLNAHLKIHAGEPAAECDTCGKKFKSKKSLTRHQLVHSDERNYPCDECGKALKSANALTVHRRIHTKEKPFGCVICGQGFAYKCLVKPHVKKCHAGEDKKARLAQIDRWKKIKQAQLQDIEKIKKEEPEQVPEQCLYEAFQQCNFEPAPELQQVVKTESIEIFHELLPPEEPPAETPETPFCCLCLRIYHPAKFVQFSPQQSWNCLDVVQVQEQLTSVLGLEIDLTEHVARVCRSCWALTELLADFRTCCMKAAEWRERFSTGIETKETSREGWLKRAAVDVVAKTRMIIVDHVERIEQAEIKARNEAEQIAGPDKDSFQDGLESVVDQLDATEDNKSKIVEQSVEMVEEIREIEVHSCPNCEKKFEGKNSMIIHLHYCKKTAPNKSKKRFTCSICFADFNYQKNLQDHLNKHKGIKPYKCRRENCNHHSYTVKERIHHEKICGKDKPICPECGLQLASPDTLKAHLGTHRAAAHPCDICDKLFKSKKTLKKHRLIHAEDRVYFPCSVCEKSLKSMAALRVHMRIHTQEKPHACHICGQGFAYKCLVKPHIKRCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -