Cqui007550.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:159548678-159551065[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.07 2 8.8 0.5 2 23 141 163 140 163 0.90 2 17 3.3 94 3.5 0.0 2 19 178 194 178 196 0.81 3 17 0.0059 0.17 12.2 2.2 3 23 207 228 206 228 0.96 4 17 0.19 5.4 7.4 1.4 1 23 233 255 233 255 0.96 5 17 8.1 2.3e+02 2.3 0.7 1 20 271 289 271 291 0.74 6 17 0.0026 0.074 13.3 0.2 2 23 314 336 313 336 0.94 7 17 0.00057 0.016 15.4 0.2 2 21 351 370 350 371 0.95 8 17 0.21 5.9 7.3 0.2 1 23 378 400 378 400 0.96 9 17 0.0018 0.051 13.8 0.6 1 23 406 429 406 429 0.94 10 17 0.0058 0.16 12.2 0.5 1 21 447 467 447 468 0.96 11 17 8.8e-05 0.0025 17.9 0.1 1 23 475 497 475 497 0.96 12 17 0.0078 0.22 11.8 0.6 1 17 503 519 503 520 0.91 13 17 0.00017 0.0048 17.0 0.6 1 23 531 553 531 553 0.97 14 17 6.6e-07 1.9e-05 24.6 5.0 1 23 559 581 559 581 0.99 15 17 0.02 0.57 10.5 2.6 1 23 587 609 587 609 0.96 16 17 0.04 1.1 9.6 0.7 1 23 615 637 615 637 0.98 17 17 0.46 13 6.2 3.5 1 23 645 668 645 668 0.95
Sequence Information
- Coding Sequence
- ATGGACAACGTCGAATCAATCTGCCGGATCTGTCTGACCGGTTCCGCCGGCGACATCGACCGGCTGCTAATTGACATCTTCCCCCGGGAGAAGGAAGGTTCGGAGCCGGAATTTCCGGTGCTTGAAGCATTCCATACCATTTGCGGGGTCGAGGTGCAGCAGGATGACTTGATGCCCAAGCAGCTGTGCTCGATTTGTTTCTCCAAGCTGGAGCAGGCGTTCAGTTTGCGACAACAATCGCAAAAATCGCACGAAACGTTGAGTAACATTTTGACGAAGGCGGTTGGAAGTGGGCAGTATGAGGAGGATGGGGATGAGGACCGCCTGTACGAGGTCGAGTACCTTTTGGAGGAGCAGGAATCGgttgagctggagtcggaggtGAAGATTGAGCAGGCAGAACTTCAAGCTGCGGAAGTTGTTTGCTGCGGATGTGACGACTCTTTCGCGAGTGAGAATGAGCTGAGGAGGCACGCTGGACGGCGTCACCGGCCGAAGGTTTTGGTCACGGGAATTCCTGCGGGGAGGAGGCAGTGCAACATTTGCTTTGAGGTGTTTGATGAGGCTGGTTTTGTAGCGCATCGCGAGGGAAGGAATAACGTTCAACCGTTGAATGCTTGCAAGTTTTGCGGGTGCAAGTTTGCCTCGCGCAACGGATTGGCGAACCACCAGCTGAAGTTTCACGGGGACAATCGGTACCGATGCTGCGGGTGTGACTTTAGTTCGTTGAGGCTGTCGGAATTGAAGGCGCACGCGAAGGACCACGAACGAGAATTTATCTTTAATGGACGATTGACTGAAGGCAAGAAGTACTCGTGCAAGCTGTGTTTCGCTCAGTTTGGAACCGTGGCGCTGAAACGCCATCACGAGCGATTCCCGTACCGCAAGCTTAAGTCCAAACAACCGAGACAAACCGACGAAGTCACCGTCTCCATCCTGCGCTGCTGTGGCTGTCCGAAGATCTACCCGACATATCCGGAGCTACGCGCTCACCAGCAGGAAATTCATCTGCCACAGCGTCCAAACAACCCCGATCTGGCGATGATGGTCGAGTGCGCGGGTTGCTACCGCCAGTTCCGAAACAAGGCTTACCTCAATAGACACCTCCGGCAAGCAGCGGAAAAGAAGCTATTCGCTTGCGGCAAGTGCAGCGTGACTCGGAGAACTCTGAAAGAGCTGATGGAACACGAAGCGACGCACACCGGGGGAGAAGCGTTCGTTTGTTGTGGTTGTCGGGAGGGTTTCGCTTCGAAGGAGGAACTGGAACGGCACTCGAAGGAGGTGCACGCGCGAAGACCGAAGGTTTACCTAAACGATGAGGAGAGTACGGAGCGGCCGTTTGAGTGTGGCGTGTGCTATCGAAGATACAAGTCGGCGCGGGATTTGCGAGGTCATCAACGGTTCGTGTACTACGAGAAGGTACACATTTGCGAGACGTGCGGGAAAGGCTTCGCCCAGGAAAACTCGCTCGCCGTGCACCTGGCCACGCACAAATCCCACCCGGAGTTCCCATGTCCAACGTGCGGAAAAAAGTACAAACACGAGTCGAACGTGCGCAACTGCGTCGCCCGACACGAGCGCCCCAAGCAGCACCGGTGCAAGATCTGCAACGTGACCTTCCCGGCCGCCTCCAATCTGTACTCGCACATGGTTTCGCACTCGGAGGAACGTCGCTTCAAGTGCGACGTGTGCGGCATGACGTTCAAGCGAAGTTTTCACCTGCGCAAGCACCAAAACACCCACACCAGCGTGCGCAACTTTGCCTGCCGGCACTGTCCGTCGCGGTTCAGCACGACAACGGAGCTGTACAAGCACGAAATCCGCCACACCGGTCAGTATCCGTACCAGTGCGGTGTCTGCCGGAAGCAGCTGACCACGCGACAGGTGTTCATCAAGCACGTCGAGAGTCACGTAGCCGACGGGGATAAGGTGCACCGGTGCGAGCTGTGTCCAGCCCGGTACAGCCAGGACCACTTTTTGTCCAACCACGTCAAGTACACGCACCGACTGGAGCCGCAGGACAAGAGTTGGAACGAGAAGTTTAACCGGCGGGGGCCGTCGAATCGGATGAAGGGCGGTGTTCGGATTGCCGGGGTGTTGCTGGGAGGAGGGGGAGGTCCGGGGATCGTCGAGCAAGGGGAGGAAGAACAGGGAGAGGGAGATACTTATGAGCTGCTGATCGATGAGCAGATGGAGGGCATGGAGGAGATTGCCGTGGAGCTGGAGATACGGGATGAATAA
- Protein Sequence
- MDNVESICRICLTGSAGDIDRLLIDIFPREKEGSEPEFPVLEAFHTICGVEVQQDDLMPKQLCSICFSKLEQAFSLRQQSQKSHETLSNILTKAVGSGQYEEDGDEDRLYEVEYLLEEQESVELESEVKIEQAELQAAEVVCCGCDDSFASENELRRHAGRRHRPKVLVTGIPAGRRQCNICFEVFDEAGFVAHREGRNNVQPLNACKFCGCKFASRNGLANHQLKFHGDNRYRCCGCDFSSLRLSELKAHAKDHEREFIFNGRLTEGKKYSCKLCFAQFGTVALKRHHERFPYRKLKSKQPRQTDEVTVSILRCCGCPKIYPTYPELRAHQQEIHLPQRPNNPDLAMMVECAGCYRQFRNKAYLNRHLRQAAEKKLFACGKCSVTRRTLKELMEHEATHTGGEAFVCCGCREGFASKEELERHSKEVHARRPKVYLNDEESTERPFECGVCYRRYKSARDLRGHQRFVYYEKVHICETCGKGFAQENSLAVHLATHKSHPEFPCPTCGKKYKHESNVRNCVARHERPKQHRCKICNVTFPAASNLYSHMVSHSEERRFKCDVCGMTFKRSFHLRKHQNTHTSVRNFACRHCPSRFSTTTELYKHEIRHTGQYPYQCGVCRKQLTTRQVFIKHVESHVADGDKVHRCELCPARYSQDHFLSNHVKYTHRLEPQDKSWNEKFNRRGPSNRMKGGVRIAGVLLGGGGGPGIVEQGEEEQGEGDTYELLIDEQMEGMEEIAVELEIRDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400899;
- 90% Identity
- iTF_00400899;
- 80% Identity
- -