Cqui005733.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:81914924-81917970[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.7 20 5.6 1.2 2 23 207 229 207 229 0.93 2 13 0.013 0.38 11.1 1.3 1 23 232 254 232 254 0.94 3 13 0.12 3.5 8.0 0.7 3 22 270 289 269 289 0.96 4 13 6.9e-06 0.0002 21.4 1.2 2 23 346 367 345 367 0.98 5 13 0.0028 0.08 13.2 0.3 1 23 371 393 371 393 0.98 6 13 0.0018 0.052 13.8 1.7 1 23 399 421 399 421 0.96 7 13 0.00064 0.018 15.2 1.4 1 23 434 456 434 456 0.91 8 13 2.9e-05 0.00082 19.4 0.2 3 23 462 482 460 482 0.97 9 13 0.019 0.53 10.6 3.6 1 23 488 510 488 510 0.95 10 13 6.8e-05 0.0019 18.3 0.6 1 23 516 539 516 539 0.94 11 13 0.00054 0.015 15.4 0.9 1 23 545 567 545 567 0.96 12 13 0.0016 0.045 14.0 0.2 1 23 573 596 573 596 0.96 13 13 0.00024 0.007 16.5 1.7 1 23 602 624 602 624 0.98
Sequence Information
- Coding Sequence
- ATGGTTCCACGACAATCGCCacttgcaatcaaaatgaaatttggtttgtttgcGGACACGAAGGCGCTGTGCCGAGTGTGCATGACGGCCACGGACGGACATCGCACTGACCTGTACGACGGAACTTCGCTTGTAGCCGGACAGCCGAGTTTACATGAAATGCTGAAGGCCATTTGCGCCGCAGTATTTGATAAATCTGATGCTGACTATCCACCGGGATTTCCGACGCAGGTCTGCGCCAACTGTCGGAATGCTATCCTCGTGGCCTTCAAGCTACACCAGACGTGCATCGAAACCGACCGCCGGTTGGGCGAGCTGCTGGCGCTAAAGTGGGAGCTTCAGGATCTTGGGGGCGGTGGAGAATCCGGAGATCCGCTGAGGTCCAGTAATGAGATAGGAGAAATAACGGACAAGAGTTTTGAACTGGGAGGAGATGGTACCGCTCAAATTGTAATTCATCCCGGACCTaatgatcaaaacaatgtcTCGTGCCCAATGAGTGAAGAAAAGATTAAAGTAGAAGAACTAGACTTGATGGATGAAAGCGGAATCGATGGTCATGACTCTAGTAGTATTGACCAAGAAGAAATAGCCAATGAAGTTGGCAATGAGATGGAAGTATGTGAAATTTGCTCAGAAAAATTCATTGAAACTTCAATCCTATGCACTCACATGACAAATAGGCATCAACTGTATATGTGCGATTTATGCCATCAAACGTTTGGATCGCAGCTCTGGCTATCGAAACATGAAACCCTGCATTCAAGGACTAGAAATCATCTAAATGTATATCCAGACCCCGTGTTTTGTTTCGAGTGTGGCCAAACGTTGCAAAACACCGCTAGGCTGCGCAAACATTTACGGACGAGATGTGCTAAGCTGAAAGCTTTATCGCTAACGAATAAGGAAGTTGCTATCAGAACCTGCAGAGTATGCGGTAAATTTCATCAATCTGTTCGTCGTCTGTTTGAGCATATGAAACAGGACCACCCGGGCAGAAACAAGTTGGGTTTGGTCGTTGTTAGGAAGCGGAACCAATGCAGTAAATGTCAGGAATCGTTTCCTACAAAATCAGCTCTAACAAAACATCGACAGGTTCACAATGCGCCTTTTAAATGTTCGATATGTGGCAAAGAGTTGCTCACCAAACAAGCACTCAAGGGCCACATCATGAGACACTCGGACATTAAACCTCATAATTGCGATTTGTGTCCACTACGGTTTTACACGACCCAGGAGCTGAAAAGTCACATGTTACTGCACGCTAAACAACAGAATGCCATTAGAGAAATAAAGTTGCACAAGTGCAAGACTTGCAACGCAGCGTTTCCTACGAAAGAAGCTCTAACCAAACATCGTCCGACACACAACGTACCTAGCAACTGCTCGGTCTGTGGTAAAACGTTGAATTCCAGCGCAGCACTCAAGGTCCACATGATGAGACACGCTGATACTAAAGCACACTGTTGCGAATTGTGTCCGCTGCGGTTTTACACAAAAGGGGACTTGTACAATCACAAGGCATCTCACATTCAACAACGGACTCACATTTGTGATATTTGTGGGTCGAAGTTTGCAAAGCAAAGTGCGCTGAAGAGACACGTTAAACTTGTCCATGAAGGCCTTCGCCCCTTTGAGTGCCAGATTTGTGGTTTCAAGCTGTTCACGTCGACGCAGCTGAAGCGCCACTTGCTTGGCCATTCGAAGGAAAAACCCTACAAGTGCGAGCTTTGCACACAAGCCTTCGTCAAGACCGACGAGCTGGCCAATCACGTGGCTCGCAAACACCGGGGCGGGCTACCGTACCCTTGCGATCGCTGCGATGAGTCGTTCCGGTTGATGACGGAGCTGCGCCACCACTACCGGGTTCACGTTCAAGCTGGCGAACAGATCGATGAGATGCGGTTTACCGCGATGGCTACGTTGCAGCGAATATTCGCTAGGGATAAACAGAAGCTGCCTGAAGAAGGCAACTGTGCGAAATGA
- Protein Sequence
- MVPRQSPLAIKMKFGLFADTKALCRVCMTATDGHRTDLYDGTSLVAGQPSLHEMLKAICAAVFDKSDADYPPGFPTQVCANCRNAILVAFKLHQTCIETDRRLGELLALKWELQDLGGGGESGDPLRSSNEIGEITDKSFELGGDGTAQIVIHPGPNDQNNVSCPMSEEKIKVEELDLMDESGIDGHDSSSIDQEEIANEVGNEMEVCEICSEKFIETSILCTHMTNRHQLYMCDLCHQTFGSQLWLSKHETLHSRTRNHLNVYPDPVFCFECGQTLQNTARLRKHLRTRCAKLKALSLTNKEVAIRTCRVCGKFHQSVRRLFEHMKQDHPGRNKLGLVVVRKRNQCSKCQESFPTKSALTKHRQVHNAPFKCSICGKELLTKQALKGHIMRHSDIKPHNCDLCPLRFYTTQELKSHMLLHAKQQNAIREIKLHKCKTCNAAFPTKEALTKHRPTHNVPSNCSVCGKTLNSSAALKVHMMRHADTKAHCCELCPLRFYTKGDLYNHKASHIQQRTHICDICGSKFAKQSALKRHVKLVHEGLRPFECQICGFKLFTSTQLKRHLLGHSKEKPYKCELCTQAFVKTDELANHVARKHRGGLPYPCDRCDESFRLMTELRHHYRVHVQAGEQIDEMRFTAMATLQRIFARDKQKLPEEGNCAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -