Cqui000011.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- ZNF341
- Assembly
- GCA_015732765.1
- Location
- NC:987835-990428[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-06 5.6e-05 23.1 0.9 1 23 147 169 147 169 0.97 2 13 0.00021 0.0059 16.7 0.3 2 23 182 203 181 203 0.94 3 13 1.4e-05 0.00039 20.4 2.5 1 23 227 249 227 249 0.94 4 13 0.046 1.3 9.4 0.3 1 23 263 285 263 285 0.97 5 13 0.75 21 5.6 0.9 1 23 291 315 291 315 0.79 6 13 1e-05 0.0003 20.8 0.5 1 23 380 402 380 402 0.98 7 13 0.00057 0.016 15.4 1.8 1 23 412 434 412 434 0.97 8 13 9.9e-05 0.0028 17.7 0.7 1 23 440 462 440 462 0.99 9 13 0.52 15 6.0 0.1 5 21 471 487 469 488 0.92 10 13 0.027 0.77 10.1 0.4 2 23 499 522 498 522 0.89 11 13 0.00047 0.013 15.6 0.2 2 23 558 579 557 579 0.93 12 13 4.3e-05 0.0012 18.9 2.1 1 23 586 608 586 608 0.97 13 13 0.075 2.1 8.7 3.7 1 23 619 641 619 641 0.96
Sequence Information
- Coding Sequence
- ATGATGTGTCGGCAAGTTCTTCCGGACGCGACGGATAATGGTATCGAACAGATTTATATCGTCAAAACGGAACCCGGCCTAGAAGATGATGGTGGGCTCGCTAACATGGTCCCGGAAACGGTTGACGAAATCAAGGCTGAACCGAAGTTAGAGGATgatgaggaaaaaaatgaaaaccttGATGATGAACAACCAGATGAGATTggatttgaaaaagttgatgTGATTGTAAAAGAGGAACCAAAACTGGGTTCCGATTGCGAATCGAAACAGGACGACAAGAAGATTGACGTAAGGTCTAAGAAGTCCGCGAAGGATCGAACTGATGCCACCAAGGGAAAGACTAAACCCAAAGCAGGGAAGAAAGAAGCGATAAAAGAGAAAAAGCTAAGCTCCACCAAGGAGAAAGTTGATAATGCTCAAGTGAAGGATAAGTTGTTTGATTGCTCGATATGTGGcaagaaaataaataatgaGTACAATTTGCAAAAACATATGCAAACACACGACACACAGAGAATGGCAGAAAAAGAAAAGGAACTAACTTGTCAAATTTGTGGCAAGGtctctttttctaaaaaaaatctaaaaatacatcTTGCAGGGCATGAGAGAAAGGCACAAAAACTAGAACAACtagaaacaaagaaaaaatcgaAACTGGAAAAGCTTCAACGGTTTGTTTGTCACTATTGTCCCACAATGTTTAGCACTTCCTTTAACCTTCGGCGACACGAGGATCTTCACGACATTCCGCTAGAGCAACAAGTCCACAAGAGAAAAGAGTTCTTTTGCTACGTTTGCGATCAGGATTTTGGGTCGAAAGAAGGCATTCAGGAACATTTGTACACCCACGCTGACCAGCTGCCGTTTACGTGCGAGGAGTGCGATAAACCAATATCTATCAAATCGGTGCGTGATTTAAATCAGCACTTGGAAATGCACAAAGACACTACGAACGGAAGTGTTAAGTGTGCCTGGTGTCCGCTGCGTTTCCATTCacttaaaaactgcaaatttcaCGAGAAAACGCACGTCAATGAGGGAAGCAGTGCTTTGGAGGCGCTCAAACGCAGAGCAAGCATTTTGAGCAAGAAAAAGAACGTTAAAGTCATCGTCGTTGAAGGTGCTTTGCGCTATGCATGCGATCTGTGTGATAAATCGTACACAGTGAACGATAGGTTACAAGATCACATGAAGACGCACACTGATTTGGGTAAACCGAAAAAACTGCACGTTTGCACGATCTGTAACAAGTTGTTTACCTCTGCCGAAGGGCTTCATTCACACAGACTGGTCCATTCAGATTTATTGCCATATAAATGTGAATACTGCGAAAGAGGCTTTAAAGAAGCCGTTCGTTTAATTTCACATCGTCGCACTCACACGGGAGAGAGACCGTTCGTTTGTGGTTGTGGTCGAGCATTCGCGAAAAGGTATACAATGATGTCTCACAAAAAGATATGTTTATCGCCGGAACTGCTGACAAGTTGCTCCTGTCGAATTTGTGGAGATAAATCCTTTCCAAGTTATGCGGATTTAATAAAACACGTAACTGGGGTACACACAGAGCCCATTCCGAGAACGAAATGTCAGTTTTGTCCCGCGTTAAGCCAAAATGCGCTTCTTCTGGTACGTCACGAGCATCGTCATCAGATGCCGAACGTGATTAAATGTGATCAATGCAACCGCATCTTCAAAAACAAAGCACTGTTGGAAGAGCATGAAGTTATACACATCAACACGCCACAATCATTTATTTGTGATATTTGCGGAATGACTTTCAGTCGACTCAAACGTCTaaagaaacacaagaaaaacCACACAGCAGTACGACGAAAACCTACCAAGCTGCATTGTTGTGAGCTGTGCCCGAAAAAATTTGCATGGTTGGGGAACTTTCGCAGTCACCAAAAGTTGCACTACAACGTGAAAAGTAGACATTTTATCCCGTCACTGGTAGAGGGACCAGCACCAGAACCGGTCGTGGATGAAAATGAGGATATGGATTTTGGTATGTTGGTAAAAACAGAAATGACGTTAATATAA
- Protein Sequence
- MMCRQVLPDATDNGIEQIYIVKTEPGLEDDGGLANMVPETVDEIKAEPKLEDDEEKNENLDDEQPDEIGFEKVDVIVKEEPKLGSDCESKQDDKKIDVRSKKSAKDRTDATKGKTKPKAGKKEAIKEKKLSSTKEKVDNAQVKDKLFDCSICGKKINNEYNLQKHMQTHDTQRMAEKEKELTCQICGKVSFSKKNLKIHLAGHERKAQKLEQLETKKKSKLEKLQRFVCHYCPTMFSTSFNLRRHEDLHDIPLEQQVHKRKEFFCYVCDQDFGSKEGIQEHLYTHADQLPFTCEECDKPISIKSVRDLNQHLEMHKDTTNGSVKCAWCPLRFHSLKNCKFHEKTHVNEGSSALEALKRRASILSKKKNVKVIVVEGALRYACDLCDKSYTVNDRLQDHMKTHTDLGKPKKLHVCTICNKLFTSAEGLHSHRLVHSDLLPYKCEYCERGFKEAVRLISHRRTHTGERPFVCGCGRAFAKRYTMMSHKKICLSPELLTSCSCRICGDKSFPSYADLIKHVTGVHTEPIPRTKCQFCPALSQNALLLVRHEHRHQMPNVIKCDQCNRIFKNKALLEEHEVIHINTPQSFICDICGMTFSRLKRLKKHKKNHTAVRRKPTKLHCCELCPKKFAWLGNFRSHQKLHYNVKSRHFIPSLVEGPAPEPVVDENEDMDFGMLVKTEMTLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400888;
- 90% Identity
- -
- 80% Identity
- -