Cqui005451.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:70254073-70256153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00022 0.0063 16.7 1.6 2 23 198 219 197 219 0.97 2 9 0.00026 0.0073 16.5 3.1 2 23 226 248 226 248 0.96 3 9 3.7e-05 0.001 19.1 0.2 1 23 256 281 256 281 0.94 4 9 2.4e-05 0.00068 19.7 3.3 1 23 292 314 292 314 0.95 5 9 1.7e-06 4.9e-05 23.3 0.7 2 23 321 342 320 342 0.97 6 9 0.0017 0.047 13.9 0.5 1 23 348 370 348 370 0.98 7 9 0.0076 0.22 11.8 0.0 1 23 376 399 376 399 0.97 8 9 1.2e-05 0.00033 20.7 3.1 1 23 405 427 405 427 0.99 9 9 0.00014 0.0039 17.3 1.4 1 23 433 455 433 455 0.96
Sequence Information
- Coding Sequence
- ATGGACCAACCGTCGATGGTTTGTCGTGTCTGTGCCAGCGGCGTACCGGAGTTTGACGATTCGACGGTGCAGTTCAGTTCCGTGTCCGGCATCTACCAGACGCTCACTTCGCTGAAGccAATAACGATGGACTTGCCAGATGTAACTTGCCAGAGTTGCTACACCAAGCTGGTTGAATTTGATGACTTCCGGACGGTTTGTCTGGAGGCGTTCGAAAAGCTGCTGAAGGCGGCCAAGGGAAAGATCTCGAAGGTGGAACCGCTTGCGGAGGACGACGACAAGCCCAATCTGGAGGCACTGCAATTTCAGCTGGGTGAAGCCGACGAGGAGGAATTTGACCAGAACATGCTGGATGTTAAGGTCGAAATGCTGGACGAGGATGGTCAGCCGGATGGTGCGAGCTCTATCGGCGATGACGACAAAGAGGACGACTCTTCGTCATCGGACGACGAAAGTTCGGAGAGTTACGACAGCGAAGATTCAATGGAGGAAAAGAAACCTAGAAGGAAGAGAGGTCCGTACAAAAAGAGAACCGGAACCAGGAAATATTCGGTCAGCCAGAAGAAATCGAATGAAAAGAGAGACAAACTGCAATGCGACAAGTGTGATAAGTTCTTCTACGATCAAAAGCGTTTCGAGGGTCACCAGCGAGTTCATCAGGGGTTGAAGGAGGCCAAATGTGACATCTGTGGAAAAATGTTCTCCAAGTGGTACTACATGCACATTCACCACAAGCTGGAGCACACCGGCGAGCAGCGGGAGCAGTTTGCGTGCGACGTGCCCGACTGTGGCGCGGTTTTCAAGCAAAAGGTCAGCCTGCAGATGCACCGGCGGAAGAAGCACGAGCCGAACAGCGAGCCGGAAACGCCGACGCACATCTGCGACGAGTGCGGCAAGACGTGCACCTCGGCGTCCAATTTGAGGATTCACAAGTACTCGCACGGCGGAAATCATCCGATTCCGTGCACGATGTGCGATCGACGGTTCGAGAGTCAGAGCAAGCTGAAGGTCCACATGATGCGGCATGAAGGTATTAAGCGGTACACGTGCTCGGTTTGTGGGCTAAAGAAAACGACAGTGACGGAGTTGAAAATCCACATGAACACTCATACCAGAGAGAAGGTTTATCCCTGCGACGTGTGCAGTGCCGTTTTTTCCACTATTGGTGGCCGCAGTCGCCATATCAAGGTTGTTCACCAAGGTATCAAGGCGTTCAAGTGCACCTACTGCGAGAAGTCATTCGGGAAGGCCGAAACCCTCAAACATCACGTTATGACCCATACCGGAGAAAAACCTCACGCTTGTGATCAATGTGATCGGCGATTCATCCAGCTGGTGGCACTGCAGTCTCACAAGAAGACTCACAATAAAGGATTGTAG
- Protein Sequence
- MDQPSMVCRVCASGVPEFDDSTVQFSSVSGIYQTLTSLKPITMDLPDVTCQSCYTKLVEFDDFRTVCLEAFEKLLKAAKGKISKVEPLAEDDDKPNLEALQFQLGEADEEEFDQNMLDVKVEMLDEDGQPDGASSIGDDDKEDDSSSSDDESSESYDSEDSMEEKKPRRKRGPYKKRTGTRKYSVSQKKSNEKRDKLQCDKCDKFFYDQKRFEGHQRVHQGLKEAKCDICGKMFSKWYYMHIHHKLEHTGEQREQFACDVPDCGAVFKQKVSLQMHRRKKHEPNSEPETPTHICDECGKTCTSASNLRIHKYSHGGNHPIPCTMCDRRFESQSKLKVHMMRHEGIKRYTCSVCGLKKTTVTELKIHMNTHTREKVYPCDVCSAVFSTIGGRSRHIKVVHQGIKAFKCTYCEKSFGKAETLKHHVMTHTGEKPHACDQCDRRFIQLVALQSHKKTHNKGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400891;
- 90% Identity
- iTF_00400891;
- 80% Identity
- -