Cqui009126.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:215785130-215787322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0031 17.6 1.8 2 23 66 87 65 87 0.97 2 12 7.1e-05 0.002 18.2 0.2 1 23 95 117 95 117 0.97 3 12 0.0099 0.28 11.5 3.4 1 23 125 149 125 149 0.96 4 12 0.0012 0.033 14.4 1.3 1 21 160 180 160 181 0.94 5 12 1.4e-05 0.00039 20.4 3.2 1 23 198 220 198 220 0.99 6 12 0.016 0.45 10.8 0.1 1 23 232 255 232 255 0.94 7 12 2.2e-07 6.2e-06 26.1 1.7 1 23 274 296 274 296 0.98 8 12 4.8e-06 0.00014 21.9 2.0 1 20 304 323 304 327 0.91 9 12 0.13 3.6 8.0 6.1 1 23 347 369 347 369 0.98 10 12 0.00073 0.021 15.0 0.6 1 21 377 397 377 398 0.95 11 12 1.9 53 4.3 6.3 1 23 442 464 442 464 0.93 12 12 0.0012 0.035 14.3 1.3 1 23 472 495 472 495 0.93
Sequence Information
- Coding Sequence
- ATGTCAGCTAAAATGGAAACGGAAGATGGGGTCGATTGTCCTCAATTCCACACCGAAACCATTGTGAAGGAAGAGCTGATTCTTGAGGATGAGCTGCCAAACGAGAGCGAAGAAATAACCATCAAAAATGAACCACTGGAGGAGGCGGAGGATGAACCCGTTGAGCAGTTTTACGTCACGGGAGAATCCGCCTTGAGATGTGACAAATGCAGTAGGAACTTTACCACACAGCGCGCGTATAATGAGCACATGCTGAGGCACCGGAACATCGACAGCAAGCGATATATGTGCGAGCCCTGCCAGAAAGTTTTTGGTAACTGGAGCGAGTTGGACCGACACCAGCAAATGCACGAGGGCAAGCTGGAGTTGCAGTACAAGTGCAACTTCCCGTCGTGCGATACGGTGTGCAAAAACAAGAAGAGCTTCGAGAAGCATTTATCAGCGCACAGGAAAGAACAAAGACAGGATAAAAAGCGACATCGGTGCGACAAGTGTGACCAGATCTTCGATAAACGAATGTCCTTGAAAAGACACTGGAAGCTCAAGACTTGCGACTCGACGCCGATAGCCGTGGAGGAGGAAGACGGCACCTTCAAATGTCCCACGTGCAGCAAAACGTTTTCCCAGCAGCACCTGATTGACCAACACATCCGAACGCATCAGGGTACGCATAATACAAGGACACGAGCGACGTTCCAGTGTGAAACTTGTggattgTATGTTGCCAGCAAAAAGGAGCTCGTGCAGCACGCCGCCAGCAAGCATGGCCAGGTCAAATCCGATCCGGTAGAACTCGGTGAAAGTGACGAGCAAGGCCTTTTCGTGTGTACCGAGTGCACAAAAACATTCACGCAACGTGATGGGTTGATGCGCCACCTTCGCAGACACGAAGTGTTAAACAGTGGCTCGTTCCAGTGTAAAGTTTGCGGAAAGTGCTTTGCCCGAAAAGCCGAGTTGATGAAACACTCGGTTGAGAAACACGACGAGGAGCTAATCGTGCCAAAGCCCGAAAGGCCGGAAATGGACGCCAGTGGGCGCTTCAAATGTACTCGATGTGAGAAAACATTTGAACTCCGCCACTCGTGCGTGGCACATATCCGTAAACACAAAATTAAGGACAGTGGACGGTATCAGTGCAAAAAATGTCtgatgTGTTTCGTAAAACCAGAGGAACTGGTACGTCATGAACGTGTTGCTACAACTCAGACAGCAAGTTTATGTACCAAAAATGTCAAGTCGCTTCAACTAAACAAAACGAAACTCGCCAGGAAAACAGACAAAGCGAGGGACAAAGAGCATCACGCGATAGAAGAAAATGGATTATTTATTTGCTCGACGTGCGGCAAAACGTTCCTGAAGCGTAGGTGCTGTCTGGCCCACATTCGGAAGCATGTCCACATGGAGCAGGAAAGGTTCAAGTGTAAAACGTGTGGAATGAACTTTGGCACAAACAAGGAGATTCGTAGACATACAGCCCTGAAGCATGGCCAAGAGCAAGGCGCCAGTGCGAGCGTTGATAaaccgcaaaaaataaaaaaagaataa
- Protein Sequence
- MSAKMETEDGVDCPQFHTETIVKEELILEDELPNESEEITIKNEPLEEAEDEPVEQFYVTGESALRCDKCSRNFTTQRAYNEHMLRHRNIDSKRYMCEPCQKVFGNWSELDRHQQMHEGKLELQYKCNFPSCDTVCKNKKSFEKHLSAHRKEQRQDKKRHRCDKCDQIFDKRMSLKRHWKLKTCDSTPIAVEEEDGTFKCPTCSKTFSQQHLIDQHIRTHQGTHNTRTRATFQCETCGLYVASKKELVQHAASKHGQVKSDPVELGESDEQGLFVCTECTKTFTQRDGLMRHLRRHEVLNSGSFQCKVCGKCFARKAELMKHSVEKHDEELIVPKPERPEMDASGRFKCTRCEKTFELRHSCVAHIRKHKIKDSGRYQCKKCLMCFVKPEELVRHERVATTQTASLCTKNVKSLQLNKTKLARKTDKARDKEHHAIEENGLFICSTCGKTFLKRRCCLAHIRKHVHMEQERFKCKTCGMNFGTNKEIRRHTALKHGQEQGASASVDKPQKIKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400885; iTF_00400887;
- 90% Identity
- iTF_00400885; iTF_00400887;
- 80% Identity
- -