Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:205171594-205174024[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.14 4.1 7.8 5.3 2 23 77 98 76 98 0.95

2 14 0.004 0.12 12.7 0.6 1 21 106 126 106 127 0.93

3 14 1.7e-05 0.00049 20.2 1.4 2 23 143 164 142 164 0.96

4 14 3.5e-05 0.001 19.2 3.1 1 23 172 195 172 195 0.95

5 14 0.0072 0.2 11.9 3.9 1 23 230 252 230 252 0.93

6 14 0.00041 0.012 15.8 1.3 1 23 260 282 260 282 0.99

7 14 0.4 11 6.4 0.3 1 23 310 332 310 332 0.93

8 14 9.8e-05 0.0028 17.8 0.4 2 23 341 362 340 362 0.96

9 14 0.12 3.5 8.0 1.4 1 10 390 399 390 412 0.85

10 14 0.0015 0.041 14.1 1.4 1 23 420 442 420 442 0.98

11 14 0.032 0.91 9.9 0.6 1 23 469 491 469 491 0.96

12 14 0.0023 0.066 13.4 4.4 1 23 499 521 499 521 0.98

13 14 3.3e-07 9.5e-06 25.5 1.3 1 23 537 559 537 559 0.98

14 14 0.00044 0.013 15.7 0.5 1 23 567 589 567 589 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.14	4.1	7.8	5.3	2	23	77	98	76	98	0.95
2	14	0.004	0.12	12.7	0.6	1	21	106	126	106	127	0.93
3	14	1.7e-05	0.00049	20.2	1.4	2	23	143	164	142	164	0.96
4	14	3.5e-05	0.001	19.2	3.1	1	23	172	195	172	195	0.95
5	14	0.0072	0.2	11.9	3.9	1	23	230	252	230	252	0.93
6	14	0.00041	0.012	15.8	1.3	1	23	260	282	260	282	0.99
7	14	0.4	11	6.4	0.3	1	23	310	332	310	332	0.93
8	14	9.8e-05	0.0028	17.8	0.4	2	23	341	362	340	362	0.96
9	14	0.12	3.5	8.0	1.4	1	10	390	399	390	412	0.85
10	14	0.0015	0.041	14.1	1.4	1	23	420	442	420	442	0.98
11	14	0.032	0.91	9.9	0.6	1	23	469	491	469	491	0.96
12	14	0.0023	0.066	13.4	4.4	1	23	499	521	499	521	0.98
13	14	3.3e-07	9.5e-06	25.5	1.3	1	23	537	559	537	559	0.98
14	14	0.00044	0.013	15.7	0.5	1	23	567	589	567	589	0.97

Sequence Information

Coding Sequence: ATGGCCGAATCTAAACCATTTCCTGCGGTGGTCAAACAGGAGCCCGTGGACATCGAAGAACCAAGCTCGTTCTGTTACGAAACCATGGTAAAGGAAGAACTTATCATCGAGGACGAGCTGGAGCCCTCACCCGAAAAAGATGATGGCCATTATCGAACTGCAGCAGACGAAAGCGACTTGGAGGACATTCCGAAATCCTCGAAAGGCCAGCCAAGCAACAAAAAATGGCACTGTGAAAAATGTAACAAGTCGTACCATAGCTCAGGTGCTTTCAGCACGCACAAGACGCGCCATAAAGCGTTTGAAACTGGCCGGTTCGCGTGTCAGCAGTGtgaaaaaCGATTTGGAGATAACCGTTCACTAAACCTTCACAAAATGAAAGGATGTGAAGGGGAGTCTACAGAAAATTCCGATGGCAAATCCTGGGTCTGCGTAGAGTGCAACAAGACGTTCTCAAATCCTTACACCTTTCAACATCACATTTACTCACATAGGGTTGTGTCGGCATGCGAATACAAGTGTGAAACATGTGAGAAGTGTTTCAAGGTAAAATACGCACTCACGAGACATGAACAAAATGCGCACCAAAAGAAGATAAAGACTGAAGCAAAACAGTTGGTAAGGGACGCCAGTAAGTCGGAAGCAGAAAAGGTTCGCAAAGTTGTGGAAAAGGacgaaaatggcttctttaagtGTCCGGACTGCGACAAGCGCTTCAAGTACCGATTGAAATGTATTATCCATGCTCGGCGACATGTCGCTTTGAAGGAAGGATTTTACAAGTGCAAAATATGCGAATCGGCTTTCAAATCAAGCGGCGAACGGAAGCAACATGAACGTACCCATGAGAAACACAATTCCAGAATGTTAGGCGACCCGTATGCGTTGATGTGTCCCAAAGCAACTCTGACAGAAGAAAGTGGCATGTTCAAGTGTTCAGCTTGTGTGAAGACCTTTGAACAACGGCCCGAAGGTCTGCGTCATGTCCTGAGACATGTCCATGTAAAGCGAGAAAGGGTCCAATGCGACTTGTGTCCATTGACATTTGCCAACAAAAAGTATCTCGAAAAACATCAAACAGAGCACGCGACTTCAAAGGACGTTACGGCTAGTGAATCAACCAGCAACGGTGGCTCGGAAGATTCAGCGAAGGTTGAAGACGGCGGGTTCAAGTGTACCGATTGCAACAAGACATTTTGGAACGAGCGTCGGTTCGATTTTCACATTCAAAGGCATAAAGCTATCAAGGAGAGCAGATTCCCCTGCAAGCTGTGTGATATGCGCTGTGGAAACACAGCAGAGCTAAAAAGACACGAGCAGACGCATGCTAGGAAACAACAACCCATGCTTTTGTCTGGGGAGAAAGTGCCTCCGATAATTTTGGAAAGAAACAACCACACCGTTTACAAGTGTCCCGAGTGCGCCTTGATATTCACCAAACAGCGGGTCTATTTCACCCATGCCCAAAACCACCTTAACGTCAAAAACGGAACATTCAAGTGTGAAACTTGTGGGACCtgctGCCCATCCAGGAAGAAATTGGCGTTGCATATGGTAAAACATCGAGAGGGAAAAGTTGTCATGCAAACACGGCCGGATAATCTTCTTTACGAATGTACCGAATGTGGCAAAAAGTTTTCACGTAGAGTTTATTTAATCAAACACGTGCAAAGGCATAAAGCCTTCGAAAATGGCACTTTCCAGTGCAAGGTATGTGCCAAGTTCTTTGGATCTCGTGTTCAACTAATCCGACACGAAACGATCCATTGA
Protein Sequence: MAESKPFPAVVKQEPVDIEEPSSFCYETMVKEELIIEDELEPSPEKDDGHYRTAADESDLEDIPKSSKGQPSNKKWHCEKCNKSYHSSGAFSTHKTRHKAFETGRFACQQCEKRFGDNRSLNLHKMKGCEGESTENSDGKSWVCVECNKTFSNPYTFQHHIYSHRVVSACEYKCETCEKCFKVKYALTRHEQNAHQKKIKTEAKQLVRDASKSEAEKVRKVVEKDENGFFKCPDCDKRFKYRLKCIIHARRHVALKEGFYKCKICESAFKSSGERKQHERTHEKHNSRMLGDPYALMCPKATLTEESGMFKCSACVKTFEQRPEGLRHVLRHVHVKRERVQCDLCPLTFANKKYLEKHQTEHATSKDVTASESTSNGGSEDSAKVEDGGFKCTDCNKTFWNERRFDFHIQRHKAIKESRFPCKLCDMRCGNTAELKRHEQTHARKQQPMLLSGEKVPPIILERNNHTVYKCPECALIFTKQRVYFTHAQNHLNVKNGTFKCETCGTCCPSRKKLALHMVKHREGKVVMQTRPDNLLYECTECGKKFSRRVYLIKHVQRHKAFENGTFQCKVCAKFFGSRVQLIRHETIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00401943;
90% Identity: iTF_00401943;
80% Identity: -