Cqui000355.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:10026624-10045408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00042 0.012 15.8 2.6 2 23 270 292 270 292 0.97 2 22 0.14 4 7.8 0.8 3 23 305 325 304 325 0.94 3 22 8.5e-05 0.0024 18.0 0.9 3 23 331 352 329 352 0.96 4 22 0.012 0.34 11.2 0.8 2 23 359 381 358 381 0.96 5 22 6e-05 0.0017 18.4 2.0 2 23 387 408 386 408 0.97 6 22 0.00038 0.011 15.9 0.2 1 23 466 488 466 488 0.97 7 22 0.0044 0.13 12.6 2.4 2 23 495 518 494 518 0.92 8 22 8.3 2.4e+02 2.3 0.0 1 23 847 870 847 870 0.90 9 22 0.0012 0.034 14.4 1.6 1 23 905 928 905 928 0.98 10 22 0.0043 0.12 12.6 1.4 2 23 938 959 937 959 0.97 11 22 0.00085 0.024 14.8 1.7 3 23 965 986 964 986 0.97 12 22 0.0084 0.24 11.7 8.1 1 23 992 1015 992 1015 0.97 13 22 0.0047 0.13 12.5 4.0 1 23 1020 1042 1020 1042 0.99 14 22 0.00045 0.013 15.7 0.6 1 23 1100 1122 1100 1122 0.97 15 22 0.00052 0.015 15.5 2.7 1 23 1128 1152 1128 1152 0.92 16 22 8.8 2.5e+02 2.2 0.1 1 23 1495 1518 1495 1518 0.94 17 22 0.18 5.2 7.5 1.4 2 23 1554 1575 1553 1576 0.94 18 22 0.0051 0.15 12.4 0.7 2 23 1586 1607 1585 1607 0.96 19 22 0.0092 0.26 11.6 3.5 3 23 1613 1634 1613 1634 0.98 20 22 0.00041 0.012 15.8 0.2 1 23 1640 1663 1640 1663 0.97 21 22 0.13 3.6 8.0 0.0 1 23 1744 1766 1744 1766 0.95 22 22 0.00072 0.021 15.0 2.2 1 23 1772 1796 1772 1796 0.93
Sequence Information
- Coding Sequence
- ATGGATTTCGAGAAAGTTTGTCGCCTGTGCCTGGAGGAGAGGGAGCGGTTGCGGCCGATCACCGCCGGCGAGGACACTTTTCTGCGTGACATTTTCCGCAACATTTTGCAGATTGAGgtATATCCAAATGATCAACTGCCGCAAAACATTTGCGCAACGTGCGTAACTTCGCTTATAAAACTTCACAGTACGATTGAACTGTTCCGGGCGAACGATTTAAAGCTTCGCAATCAGTTGTACGGATTTGTTGAGGTCAAAACGGAGATCATTGAGGAAACGGTGGAACCGGCACCGTTACCAAATCCcaaaaaagaaGATGAGCAGGATGAAAACGGTGAACTGCCGGAGGCAGAGTACTTGGATGAGGATTTACTCGTGGATCCCAGTGAGATCAAAAGTCCAGAATACGAGGACCTTCAAGGCTTCACTAAAAACGAGGATCAAGACGAATCTGATTTGGACATTACAGCAGATTGGAAGGTGCCAACAGACGAGAGTGATTCTCAACTGGAACGTCCCAAGCGAAAGCAGGGTCGACCGCGGGTTAGACCGATGAAACAGCGGCGAAAGGGCGTCTTCGGTCGGCCCCGAACTAACTTTAGAGATCCAAACCGGCCACGTAAAAACGATCACAAGTGCTACATCTGCATGAGTGAATCGCTGGGAAGTTCCGAAGCGCTCTTTGTCCACTTGAGTTCACACACCGACCAGCTGCCGTACACGTGCACCGTGTGCGTGCAGGAAACGGTCGTGATCAATCAGGTCACCACGCTGAACATCCACAAAAGGATGCACCTACTGCCGGAGAAGTGCCCGCACTGCGACAAACGCTTCAGCGGCAAACACAACATCGAACTACACATTTTAATGCTGCACCAGGAGCTCGCACCGCAAGACGAAAGCCCCGCACCGTGCCCCACGTGTGGCAAGGTGTTCCTGTCGGAAAAGGCTCTGCGATTCCACATGCACTCGCACAATCAAAGAATTGCGTGCGAAATCTGCGGCAAAATGTACCACTCGAAAACAAAACTCCGCGTTCACATTCGACGGGTGCACGAAAAAACCGGCAAAGTGGAGTGCCACATTTGTCACAAAATGCTGAATTCGTTGGATGCGGTTCAAAGTCACATCAATATTATGCACACAAATGAGAAGGTTCAGTGCAAGTACTGCCCGAAGACCTACACCTCGAAAACGAGCCTCCGCCTGCACGAAAAGCGCCACGAAACCATCCCGGAGGGTAAGGAGATGTCCAACGACTGGAAGCAGTTCTACACGTTCGTGGAAGGCAACGAGGACCTGAAGCCGAGTGCCCGCATGAAGCGGTGCAACCTGTGCGGCGCCACCGTGCTGCAAATCGGAACCCACCTGGCCAAGCGCCACTTCCCGAAGGAGTTCCGTTGCGCGCAGTGCGAAACAAACTTCAGCGACCGGAAAGCGCTGGAGGTGCACATGCTGGAGCATAGCGTCGGGAAGTTCCTCAAGTGTCCCATCTGCGAGCACGAGTTTACCGAGCGAAAGTATCTGGTGAAGCATCTCAAGACCAAAAAGCACCGCGACCACCCGCTGGCGCAAAACACCGACTGGCTCGATGCCAAGTATCCGTCGACGGTGCCGAAGCGGATCAAGTCGGAGGGAGGCACGGTTCAGGAGGTGCAGAGCGCGGTGGAAAGCATTGGGGCGTTTGTGCAGGAATCACGCCAGTGTGTTTACATTCATCTGTCActcgccatcgtcgtcgtcgagccaacagagcagcagcagccagaTTTTTCTTTCGTTCGCACAACGATGGAGGACGATTCTGCGGTGGCCGTCGCCGCCGCCGAGGCGCTTCCGGACGTGAAGCAGTCGCTAGATTTCGAGAAAATCTGTCGCCTCTGCTGCGAGGAGCGCTTCCGGATGCGGACCATTCTCGCCACCGAGGGGGACTACGCGCTGGGGAAGATTTTCAGCGAGCTGCTCCGGATCGAGGTTTATCCCGACGATGGGCTGCCGCAGAAGGTTTGCAAGGAGTGCGCCAGGAATATCGTCAAGATGTTCGAGGCCGTCGAGTACTATCGGGCGAACGATTTGTCGCTGCGGAAGCATCTGGTCGGAACGGTGGAGatcaaggaggaggaggaggaagtgGACATGGACTCGCCCAACGTTATACAGCAGCTgAAAATTGAAATGCTCAGCGAACCTTCGGCAGTGCCGGTGAAGAGCGAATATCGCGAAAGACAGCAGCGACAGACTCCCGAGCAGGATTATGAGGACGATCCGACCTGGGAGTTTGGGGACAGTTTGTACCCGGGCAACGAGGACGAAGACGATCGGCAATCTTCCtcatcttcgtcgtcgtcgtcttccgaCAGCAGCGATGGCTCGGTCGACGGAGACACGTCCGACTCGGACGCTTCGGAAGAAATCAAGCCCAAGAAGCGAGGTCGTCCACGGGGCAAAACCAACAGGGGACGTCCGCGGGGATCGGGCGGCAAGCGTGGCCGTCGCAAAACCAAAGTGGACAATCCGAGTCGGCCACGTAAAAACGACCACAAGTGCTACATCTGCGGTTCGGAACCGCTCGGCTCGGCAGAAGCCCTGGTGGCTCATCTGAACGAACACACGTCCGAAGTTCCGTACACGTGTCCAATCTGTGTCATGCAAACGATCGTAATTACCAGTGTCAACACGTTGAACATCCACAAACGGATGCACCTGAATCCGTACAAATGTGACCACTGCGATCGTCGTTACAGCGACCGGAACGCGGTCGACTTGCACATGCAAATGCAGCACACGGGCGCCAACGATCCGTGTCCGTCGCCCTGTTCATACTGCGGCAAGATCTGTCCGACGCGGCTGTCCCTGCGCTATCACGAGCGAAGTCACCAGACGGCCGTGGCCTGCGAAATCTGCGGCCGACTGTTCGCCGAGAAGCACAAACTCAAGCAGCACATCCGCCGGAAGCACGAAAAGATCCGCGAGCACGAGTGCCACCTGTGCCATAAGAACTTCTCCTCGCTGGACTCGGTTCACACCCACATTCGGACGATGCACTCCAACAACGAGTACAAGTGCGAGTACTGCAGTCGAACTTACACGTCCGAGCTGTCCCTGCGCTACCACAAGAAGAAgcacgaaaatgaccaaaactacCAAGCAACCCAAAAGTGGACCCAATACTACACCGTGCTGGAGCCCGAACCCGGCGCCAAGGAGGGCGCCCAGCGCATGAAACGGTGCAACATTTGCGGGGCCGTCGTGCAGCAAATCGGCACCCACCTCAGCAACATCCACTTCCCCAAGGAGTTCCGCTGCACGCTCTGTGACGCGGTGTTCAAGCGCAAAGAAACGTACGAATCGCACGTCATGGAACACGAGCACGGCAAAGCGTTCAAGTGTCCAATCTGCGGCAAAGAATTCTCCAGCCGCAAGCTGCTCATCTGCCACCTCAAGACCAAACAGCACCGAGATCACCCACTCGCCCAATCCCTCGATTGGCTGTACACCAAGCGCGAGCGCGTACCGAAGCATTTACAACAGCAGCAACCGCCGCCAATTCAACCGCTGCCTCAGCACGTCGTCAAACGGGAAACGACCATCGTGACCGGCGTCGAGCAGACCGTCTACACGACGCCAACAACTCCAACCGTGCAAGTGATGGAACGTGGTGGTCCTGCTGCTGCGGCGGCGGCGTCCCCGATGGACATGTTCAAGGTCGGAGGGAGCGGGGTGCTCGTGTACCCGTCCGTTGTGGTGGAAACCCACACGCCGGACGTGCGCAGTCCGGAAATGGTCGTACCGGTGCCGATCAAGAGCGACAACGGGATGAAACCCCCGCAATTCCCAATGGATTTCACCGAAATATGTCGCATCTGTTGCGAGACCCGGCCGGACCTGCGTCCAATTCTGGAatccgacggcgacgacgacttcTTGCACCAACTGTTTCACCAAGTTCTGCGGCTGGAGATCGCCGCCGACGACGGGCTGCCGCAGAATGTCTGCACGCTGTGCCGGGAAACGCTGCGGAATGTGCAAGAAACGATCGCGATGGCCCGCGCGAACGATGCGATGCTGCGAAAGCAACAGCAACGGCTGGCACGGGGAAGCGATGGGGAACACCAGGTCACGGCGGAATTGCAAGTCGATCTTCTGACCGAATCAGCCGTCGAAGATCAACTCACAAACTCATGCGAGGACGTCGAAGGAATcgttgatgaaaacgttatcATCGAAGAAGTGTTGGAAGAATGGATCCTCTCGGACGCTGATGATCACCCTTCTGAATCAGAACTTTGCCCAACGGATCAAGAGGAATCCCACGCCATCGTCCAGCAAGAATCGTCCGACTCGGGACACGTTTCGACTGACCTCGAAGAGACCAACAAGGACAAGCCCAAAAAGCGCCCGCGCAAACGTCTCGTAAGTCCACCTCCGCCGCCTCGCAAGCGGCAAAGGCGTGACGATCCGGAACGACCCCGCAAGAACGACTTCCGGTGTTACGTGTGCAAAAGTGAGTCGCTCGGGTCGGCGGAAGCCTTGTACGCCCACTTGAACTCACACGCCGACGAGCTGCCGTACACGTGCTCGAGCTGCGTGATGGAACGGGTCGTGATCCGGAGCGTTACGCAGCTGAACGTGCACAAGCGGATGCACGAGAATCCGGTCAAGTGTGGGTATTGCGACAGGCGGTATCACAACGCGCGAGCGGTGGAGTTGCACGTCCAGTTGCACCATCTGGGGGAGAACGTTTCGCAGCCGGTGGAGTGTGGCCATTGCGGGAAGGTTTGTCCTTCGCTGCCGGCGCTGAGAACCCACGAGAAGTTGCACACGCGTGCGCTGGGTTGCGAGTTTTGCGGGAAGTTGTTCACTGGGCGGCACAAGCTGCGCGAGCACATCCGCCGGAAGCACGCGACGGTGAAGGAGTTTTCGTGCAAGGTTTGTGGGAAGGAGTTTGCCACGCTGCTGGCGGTGCAGTCGCACATGAAGATCAAACATTCGGAGCAGGAGTTCAAGTGCGGCTTTTGCGAGAGGAGCTACAGTTCGGATCAATCGCGCCGTTTTCACGAGAAGAAGCACGCGAAGGATGCAGGTTACCAGGCGAGCAACCGGTGGACGCAGTTCTACACGCTGATCGATTCCGGAGAGGGTGGTGCCAAGAAGAAGCAGTGCACTCTGTGCCAGGCGATCGTGGGCGCGATTGGACCGCACATGACTTCGGTGCACTTTCCGCAAAAGTATCGCTGCGACGTGTGCGAGGCCGAGTTCGGGTCGAAAGCTAGCTACGCGATCCACGTGGCGGAACACGAGAAGGGCAAGGCGCACCGGTGTCCGATCTGCGAGAAGGAGTTCTCGGTGAGGAAGCTGTTGCTGACGCATTTGAAAACAAAGAAGCACCGCGATCATCCGCTGTCGAAGCTGTTCTTCAAGAAGGCGCCCACGACGGTGGAGGAAATGTTTGGCGCGGACATGCCGGAGCAGCTGCTGGAGGATTGGGAGGTTGCGGGTTGA
- Protein Sequence
- MDFEKVCRLCLEERERLRPITAGEDTFLRDIFRNILQIEVYPNDQLPQNICATCVTSLIKLHSTIELFRANDLKLRNQLYGFVEVKTEIIEETVEPAPLPNPKKEDEQDENGELPEAEYLDEDLLVDPSEIKSPEYEDLQGFTKNEDQDESDLDITADWKVPTDESDSQLERPKRKQGRPRVRPMKQRRKGVFGRPRTNFRDPNRPRKNDHKCYICMSESLGSSEALFVHLSSHTDQLPYTCTVCVQETVVINQVTTLNIHKRMHLLPEKCPHCDKRFSGKHNIELHILMLHQELAPQDESPAPCPTCGKVFLSEKALRFHMHSHNQRIACEICGKMYHSKTKLRVHIRRVHEKTGKVECHICHKMLNSLDAVQSHINIMHTNEKVQCKYCPKTYTSKTSLRLHEKRHETIPEGKEMSNDWKQFYTFVEGNEDLKPSARMKRCNLCGATVLQIGTHLAKRHFPKEFRCAQCETNFSDRKALEVHMLEHSVGKFLKCPICEHEFTERKYLVKHLKTKKHRDHPLAQNTDWLDAKYPSTVPKRIKSEGGTVQEVQSAVESIGAFVQESRQCVYIHLSLAIVVVEPTEQQQPDFSFVRTTMEDDSAVAVAAAEALPDVKQSLDFEKICRLCCEERFRMRTILATEGDYALGKIFSELLRIEVYPDDGLPQKVCKECARNIVKMFEAVEYYRANDLSLRKHLVGTVEIKEEEEEVDMDSPNVIQQLKIEMLSEPSAVPVKSEYRERQQRQTPEQDYEDDPTWEFGDSLYPGNEDEDDRQSSSSSSSSSSDSSDGSVDGDTSDSDASEEIKPKKRGRPRGKTNRGRPRGSGGKRGRRKTKVDNPSRPRKNDHKCYICGSEPLGSAEALVAHLNEHTSEVPYTCPICVMQTIVITSVNTLNIHKRMHLNPYKCDHCDRRYSDRNAVDLHMQMQHTGANDPCPSPCSYCGKICPTRLSLRYHERSHQTAVACEICGRLFAEKHKLKQHIRRKHEKIREHECHLCHKNFSSLDSVHTHIRTMHSNNEYKCEYCSRTYTSELSLRYHKKKHENDQNYQATQKWTQYYTVLEPEPGAKEGAQRMKRCNICGAVVQQIGTHLSNIHFPKEFRCTLCDAVFKRKETYESHVMEHEHGKAFKCPICGKEFSSRKLLICHLKTKQHRDHPLAQSLDWLYTKRERVPKHLQQQQPPPIQPLPQHVVKRETTIVTGVEQTVYTTPTTPTVQVMERGGPAAAAAASPMDMFKVGGSGVLVYPSVVVETHTPDVRSPEMVVPVPIKSDNGMKPPQFPMDFTEICRICCETRPDLRPILESDGDDDFLHQLFHQVLRLEIAADDGLPQNVCTLCRETLRNVQETIAMARANDAMLRKQQQRLARGSDGEHQVTAELQVDLLTESAVEDQLTNSCEDVEGIVDENVIIEEVLEEWILSDADDHPSESELCPTDQEESHAIVQQESSDSGHVSTDLEETNKDKPKKRPRKRLVSPPPPPRKRQRRDDPERPRKNDFRCYVCKSESLGSAEALYAHLNSHADELPYTCSSCVMERVVIRSVTQLNVHKRMHENPVKCGYCDRRYHNARAVELHVQLHHLGENVSQPVECGHCGKVCPSLPALRTHEKLHTRALGCEFCGKLFTGRHKLREHIRRKHATVKEFSCKVCGKEFATLLAVQSHMKIKHSEQEFKCGFCERSYSSDQSRRFHEKKHAKDAGYQASNRWTQFYTLIDSGEGGAKKKQCTLCQAIVGAIGPHMTSVHFPQKYRCDVCEAEFGSKASYAIHVAEHEKGKAHRCPICEKEFSVRKLLLTHLKTKKHRDHPLSKLFFKKAPTTVEEMFGADMPEQLLEDWEVAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -