Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:100734306-100767059[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.5e-05 0.00041 20.4 0.5 2 23 88 109 87 109 0.97

2 10 1.1e-05 0.0003 20.8 0.6 1 23 115 137 115 137 0.98

3 10 1.4e-05 0.00041 20.4 2.3 1 23 143 165 143 165 0.98

4 10 0.0015 0.043 14.0 0.2 1 23 175 197 175 197 0.97

5 10 1.7e-06 4.9e-05 23.3 1.6 1 23 203 225 203 225 0.97

6 10 6.6e-05 0.0019 18.3 2.9 1 23 232 254 232 254 0.98

7 10 3.8e-05 0.0011 19.1 1.5 1 23 260 282 260 282 0.98

8 10 0.00061 0.017 15.3 0.3 1 20 288 307 288 310 0.93

9 10 2.3e-05 0.00066 19.7 1.2 2 23 317 338 316 338 0.96

10 10 5.7e-05 0.0016 18.5 0.7 1 23 344 367 344 367 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.5e-05	0.00041	20.4	0.5	2	23	88	109	87	109	0.97
2	10	1.1e-05	0.0003	20.8	0.6	1	23	115	137	115	137	0.98
3	10	1.4e-05	0.00041	20.4	2.3	1	23	143	165	143	165	0.98
4	10	0.0015	0.043	14.0	0.2	1	23	175	197	175	197	0.97
5	10	1.7e-06	4.9e-05	23.3	1.6	1	23	203	225	203	225	0.97
6	10	6.6e-05	0.0019	18.3	2.9	1	23	232	254	232	254	0.98
7	10	3.8e-05	0.0011	19.1	1.5	1	23	260	282	260	282	0.98
8	10	0.00061	0.017	15.3	0.3	1	20	288	307	288	310	0.93
9	10	2.3e-05	0.00066	19.7	1.2	2	23	317	338	316	338	0.96
10	10	5.7e-05	0.0016	18.5	0.7	1	23	344	367	344	367	0.96

Sequence Information

Coding Sequence: ATGTTTGAACAAATAAAAACTGAACCAATGGGATTCTACACCGCATATCCACCGCCCCAAGTCACCCCGGCACCAAACCCTACGCCCACTCACAACGTTGACCAgaaccaacagcagcagcagcagcaaaccaCAGTTATTACCGTGAACGAGAGCAAACCAGTAGACATCAGTATCAGTAGCAATGCACTTGTAGCTGATGCTGGCCCAAGTCGACCAGTTGAAACTGTCAGCACTACACCTAGCCGTAACAAGAGGcaaacatgcaaaatatgtgGAAAAACGTTATCATCACCTAGCAGCTATTATGTGCATATGAAACTGCATTCAGGAACAAAACCATTTGCTTGCACAGTATGTGAAGCAGCTTTTTGTAGGAAACCATATCTAGAGGTTCACATGCGAACACATACAGGCGAACGTCCTTTCTCGTGCGATGTTTGTTTAAAACGCTTCAGTCAAAAGTCATCCTTGAATACTCACAAGAAAATTCATTTAAGATATTGGAGCATTCATAAACCGTTCCAGTGCATTCAGTGTCCTGCATCCTTTGGCAGAAAGCCGTACCTTGATATTCATATGCGCACCCATACAGGTGAACGTCCGTTTGCCTGTGACCGTTGCGATAAAAGGTTTTCGCAGAAATCAACACTGAATATTCACAAACGTGTTCACGATCCAAATCATCGTCCGTTTACATGTGAGCATTGTCCTGCCACATTCTGCCGGAAGCCATACCTGGATATACACATTAGATCGCATACTGGTGAACGACCCTTCGAGTGCGCAACCTGTTTGAAGCGATTTTCTCAACGGTCAACTCTGAACATCCATAAACGAATCCACACAGGTGAACGCCCTTATGCATGTGATATATGCAATAAAACTTTTGCTGTTAAGAGCTATGTGACGGCTCATCGTTGGTCCCACGTGTCAGAGAAGCCACTCAACTGTGATCGATGTTCTATGACATTTACCAGCAAATCACAATTTGCGATTCACATCCGGACGCACACTGCTGGCCCGAGCTTTGAATGTCGCCTTTGCGGAAGATCATTCATTCGCGATAGTTATCTTATCAGGCACAATAATCGAGTGCACAGGGACAATCGCATCAATACAAGTCACGTAACAGCAACGATCAACAGCGTTGCCATTGGTGATTTCGGGGATCCGGATAATAGTTCGATGGTTGAGCCGGAAGTGAACAGCGTTTCGCAACAGCAACAACTTCGAGAACCATTCAACCGTTCGACTGAACAGCCATGTAATTTTAGGTACGTTCCAGAGCTTCAAATAACGGAACCGCAAATGGCATCACCTGATAATAATACAAGCCACAACATGTCACCATTGACCAGTTCTAGTCAGGAACATCAAACCATGCTGATTAATTCGGGTAATGCAAGTATACACGATCTCAACAATCGAAACCGAATCGATATTGAAAGGTTGCATCATGATCACTCGGAGCAGGAATCACGTAATCTGACCGAAAGGTTTATTCAAAGTGCCGAAAGGTTGACTCACAATCCAACAGTCATGCATCAGCAACCTCAAGAGCTTCAGCATCATCAGTTGATGTCGCCGATTCATCACATAGTGTCGGAAAAGAACAGTATTCCTCATCTATTGGAACCAAAGCATGAATAA
Protein Sequence: MFEQIKTEPMGFYTAYPPPQVTPAPNPTPTHNVDQNQQQQQQQTTVITVNESKPVDISISSNALVADAGPSRPVETVSTTPSRNKRQTCKICGKTLSSPSSYYVHMKLHSGTKPFACTVCEAAFCRKPYLEVHMRTHTGERPFSCDVCLKRFSQKSSLNTHKKIHLRYWSIHKPFQCIQCPASFGRKPYLDIHMRTHTGERPFACDRCDKRFSQKSTLNIHKRVHDPNHRPFTCEHCPATFCRKPYLDIHIRSHTGERPFECATCLKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLNCDRCSMTFTSKSQFAIHIRTHTAGPSFECRLCGRSFIRDSYLIRHNNRVHRDNRINTSHVTATINSVAIGDFGDPDNSSMVEPEVNSVSQQQQLREPFNRSTEQPCNFRYVPELQITEPQMASPDNNTSHNMSPLTSSSQEHQTMLINSGNASIHDLNNRNRIDIERLHHDHSEQESRNLTERFIQSAERLTHNPTVMHQQPQELQHHQLMSPIHHIVSEKNSIPHLLEPKHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400848;
90% Identity: iTF_00400848;
80% Identity: iTF_00400848;