Cqui008800.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:205112626-205114981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.2e-06 0.00026 21.0 3.7 1 23 142 164 142 164 0.99 2 12 0.0033 0.094 13.0 0.8 1 23 203 225 203 225 0.97 3 12 1.3e-05 0.00038 20.5 0.3 2 23 244 265 243 265 0.97 4 12 0.00042 0.012 15.8 2.0 1 23 273 296 273 296 0.97 5 12 0.0041 0.12 12.7 0.3 3 23 314 333 313 333 0.97 6 12 1.7e-05 0.00047 20.2 0.3 1 21 341 361 341 362 0.95 7 12 1e-05 0.00029 20.8 2.1 1 23 381 404 381 404 0.98 8 12 0.00092 0.026 14.7 2.7 1 23 412 434 412 434 0.98 9 12 0.45 13 6.3 0.1 2 23 457 480 456 480 0.87 10 12 8.6e-06 0.00024 21.1 0.7 1 23 488 510 488 510 0.99 11 12 0.011 0.31 11.3 1.2 1 23 535 558 535 558 0.96 12 12 4.5e-05 0.0013 18.8 1.6 1 23 566 588 566 588 0.98
Sequence Information
- Coding Sequence
- ATGGAACCCGAACCTTTGCAGTCATCAAATTTGGAACCAGTTCCGGAACGTTGCTCTCCCGTGCCCTGCGAAGGCGTTACCGTAAAGGAGGAACCGCACAAGGACGACGACACATCGAACGAGAGCGTTTCCCGGCAGATTAAGCTGGAACCGGAAACGGTGATATCCGAGGATACGTCGTGCTCGTTCCAGTTCGAAACAGTGCAAAAGGAAGAACTGGACATAGCAGACGATGAGCTGTTCGAAGAGGAAGAATGTTCCGAATCGTCCAGCGATGATCAGGATTCGGCCGGAGAGGGCTTCGAATCGCACGTGAACTTTGTGCTGCACCAGCGCTGGCGAAAGCAACTGATAGTGAAAAAATCAGCACGAGAACCAGCTCAGACCAAACAACCGCTGCAAAAGACTGCAAAGGAGCAATTCTTCACCTGTCACAAATGTGACGCGACGTTCACGTCCTGGAAAGAGTACCGCATACACCTGCGGAAGCACCAAATGCAGCACATTATCGCCCAAGGCATCTACAAGTgcGTTTGCATCGCGAGCAAGCTTGACGCGGCACACCGAGCGGGGAACCGCCGAAAAGTGTCGGAAGAACGTGCTAAGTTCATCTGTGGTGAGTGCAAGAGGTCATATTACTCGCGAATTTTGTACGAAAAGCACGTTTTGCGACATCAGAAAGCAAAAAATAAGGTTAGGGTTGAAAAGAAGGCAGGGGCATCGGATTGGGAGTGTGAAGAGTGTGGCAAGAAGTTTCCGGTCGTGGACTATTTCCGCAAACACCAGCGGATGCATGATGCCATAAAAAATGCCAAGTACAGGTGCGATGTATGCCAAAAGTTGTTTGCAGAGCAAAGATCGCTGTGCAGACACGTTAAAAGTGTGCATAACAAGAGTCAGAAGAAAAGAGATCTCAATTCATCAAGGGAAGCTGTTGATTGTCCCGTGTGCAACAAATCCGTCTATAAGGACGGGTTGACAACTCACCTGCGATATCACAAGTATCTCACAACGGAGAGATATAAATGTAACGAGTGTAGTAAGgtattttcaaataaagccGGCTTAGCTGCCCACCACCTGCGTACAGCTTGTGCACCGCCCAGCAATGTAGTGCAACTGCACGACGAGCGAAAACCTTATACTTGCGCTGAATGCGACAAATCGTTCTTCAAAAAAACGTATCTCAACACGCACATCAAGCGGATCCACGAAAATAAACGGCAAGGCGTATTTCAGTGCGGAACCTGCCACAACGCTTTTGGCTCCAAGTCACACCTAGCGACACACGAGCTGACCCACGCCCCACGGGAACAACGAGCACCAACAGCTAGACAGGAGAAACCGCCGGAAGAGCCGCTGAACCTGGTTTGCTCGGAGTGCGGCAAGGGCGGCTTTCCCACCCGCAAAAGCGTCATAACGCACCTCAAGCGCGTTCACGAGAACAAGTCCAAGGGAAAGTACCAGTGCCAAACGTGCCAGAAAATTTTCGGCTCACGATCCAACCTGTTGGCACACGAACAGACGCACGACCCTCAGCAAACGGAAAGGCGGTCCACCAAAAAGAAGAATCCACCGGATGACGCCGCCGAGCAGACGAATCACGTCTGTACGGACTGTGGCAAATGGTTACCGAACCGGAAGAGTCTCCTAACACATAGGAAGCGGGTTCACGAACATAAGCGGAACGGCACGTTTCGGTGCCAAACGTGCAGCAAGGTGTTCGGGTCGCGGCGAAACTTGGTGAATCACGAACGGAGTCATGTGGGGAAGGGGAGGGAGACTAGCGCGGACGGTGATTCGGATGATCTCTCGGGAGCGTTGTTGGTGTCGGGTGTGTGA
- Protein Sequence
- MEPEPLQSSNLEPVPERCSPVPCEGVTVKEEPHKDDDTSNESVSRQIKLEPETVISEDTSCSFQFETVQKEELDIADDELFEEEECSESSSDDQDSAGEGFESHVNFVLHQRWRKQLIVKKSAREPAQTKQPLQKTAKEQFFTCHKCDATFTSWKEYRIHLRKHQMQHIIAQGIYKCVCIASKLDAAHRAGNRRKVSEERAKFICGECKRSYYSRILYEKHVLRHQKAKNKVRVEKKAGASDWECEECGKKFPVVDYFRKHQRMHDAIKNAKYRCDVCQKLFAEQRSLCRHVKSVHNKSQKKRDLNSSREAVDCPVCNKSVYKDGLTTHLRYHKYLTTERYKCNECSKVFSNKAGLAAHHLRTACAPPSNVVQLHDERKPYTCAECDKSFFKKTYLNTHIKRIHENKRQGVFQCGTCHNAFGSKSHLATHELTHAPREQRAPTARQEKPPEEPLNLVCSECGKGGFPTRKSVITHLKRVHENKSKGKYQCQTCQKIFGSRSNLLAHEQTHDPQQTERRSTKKKNPPDDAAEQTNHVCTDCGKWLPNRKSLLTHRKRVHEHKRNGTFRCQTCSKVFGSRRNLVNHERSHVGKGRETSADGDSDDLSGALLVSGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400830;
- 90% Identity
- iTF_00400830;
- 80% Identity
- -