Cqui002863.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:112447618-112458134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 8.4 2.4e+02 2.2 0.1 2 23 233 256 233 256 0.87 2 25 1.4 39 4.7 1.6 2 23 263 286 262 286 0.94 3 25 8 2.3e+02 2.3 3.0 2 23 294 316 293 316 0.94 4 25 0.00034 0.0098 16.0 0.4 3 23 332 353 330 353 0.94 5 25 1 30 5.1 0.2 1 23 359 381 359 381 0.96 6 25 0.1 2.9 8.3 0.4 1 23 387 410 387 410 0.96 7 25 5.3 1.5e+02 2.9 0.1 6 23 421 439 417 439 0.92 8 25 0.12 3.4 8.1 1.2 2 21 479 498 478 499 0.93 9 25 0.015 0.43 10.9 0.5 2 23 509 531 508 531 0.88 10 25 0.00036 0.01 16.0 0.1 1 23 537 560 537 560 0.98 11 25 0.0016 0.046 13.9 6.9 1 23 566 589 566 589 0.97 12 25 0.0034 0.097 12.9 2.0 1 23 611 634 611 634 0.95 13 25 1 29 5.1 0.2 1 11 640 650 640 653 0.84 14 25 0.00014 0.0039 17.3 1.6 1 23 686 708 686 709 0.94 15 25 0.0046 0.13 12.5 0.3 2 23 1022 1044 1022 1044 0.93 16 25 0.021 0.59 10.5 0.6 2 23 1082 1104 1081 1104 0.96 17 25 0.00088 0.025 14.8 5.2 2 23 1119 1141 1118 1141 0.95 18 25 0.0029 0.083 13.1 0.7 3 23 1150 1171 1148 1171 0.93 19 25 0.00058 0.016 15.3 1.1 1 23 1177 1200 1177 1200 0.95 20 25 0.013 0.37 11.1 2.8 1 23 1206 1229 1206 1229 0.95 21 25 1.9 54 4.3 1.1 2 22 1269 1289 1268 1291 0.75 22 25 0.0015 0.042 14.1 1.0 2 23 1298 1320 1297 1320 0.93 23 25 5.3e-06 0.00015 21.7 0.8 2 23 1339 1361 1338 1361 0.93 24 25 0.0007 0.02 15.1 1.3 1 21 1367 1387 1367 1390 0.96 25 25 0.0021 0.061 13.6 0.6 1 20 1396 1415 1396 1417 0.93
Sequence Information
- Coding Sequence
- ATGCCCTGCTGCGTGCCCAGATGCGTTCCGGCCGGCGGTTCCGCCTCCGGGTTGGTCCGCTTTCCGGGCGCCGACCTGCTGCGGGACCGCTGGAAGCAGGCCATCGAAGCGGGCACGGGGCTTGGTTTGAAGGACGGGTCGCTGCGGTTGGAGGTTTGTTTGGAACACTTTGCCAAGCCGGAGGATGTTCGAGAGTACCAGGAACCGGCGCGGTTTGTCGATAAAAACGGTCTTCCAATCGAGTTGGCCAGCTGTCGGCTGTGTCTCCAGTTCCAACTCAAATCCGACATGGTGCCCTTGTTGGGACATCTGACCTCGCTAGACAACTTGTCCACTATCCTTCAACAAACGGCCCATATCAAACGGAGCCCGTCAGACATTCCAACCATGGTTTGCACCGTATGCCTCGTCAAGGTGGACCTAATTCACGCACTTCGGAGCCAATTTGCGGCCCAAGATGCGCTTTTCCAGTCATTGCAGAGTGCGGAAGCAACGTGCCACCTGGAAGTCGTGGAAGCGACCGTGCAGGATGAGTACGGCGAGCAAAAGTTGGAACCGCTCGAAGAGGACGATTGTGAGGTTGATTTTGACGCTGACGATGGTTCGAACTATTCAGAGGAAATCAATCAGGAAGATATAGGGAGGAAAAGAAAGCGTCCGAAGAAGGGCGTCAAGATGAGCTCCTTGATCGCGCGGAAGTGTTACTTGTGCAAGGTGGCTCCGTTTGCCAATCCGATCGATTTGCTGAACCATTTGAGCAAGGAGCACACTACAGAGGGCGATTTAAGCTGTACGGAGTGTAACGACGGGAAGGTGTTCGAAAGCATCCAGCGCTTCAACCGGCACATGAGTCATCACGACGGCGAGGACCGTCCGCTTCGGTGCGGCTTCTGTCCGATGCGGTACTGCGACGAGCACGGTGTGCACGCGCACGAGAATCGAGAGCACGGAACGCGGCACGAGGTCAGCGTGGTGCTGCATCGTCCCACGGCTTGTGAGGAGTGCGGCAAGATGTTTGCTTCGACGTCGAACAAGAAACGCCACTGGAAGGAAGCCCACGGGAGGAGCTCGAAGTTTGAGTGCGAGTTTTGCGAGGCGGAACTAGCGTCGAGCCAGTCGTTGCACTCGCACGTGCTGGGACATTCGAAGCCGGTTGGGCACAAGTGTGAAATCTGCGAGATGTGGTTCCGGTCGGAAGCCGTGCTGCAGAAGCATTTGGAGAAGGTTCACGAGGGCGCAGTTTATCTGGATTGTGCGCCATGCAAGGAACAGTTCGAGAGTGAAGAAGCGTTCATCGATCACTTGCAACGGAAGCATCGACAGTGCGAAACGTACGAGTATTCGTGCAGTCTCTGCCTGGAAGTTCCTCAGAGCGCGGAAGACCTCGATCAGCACATTGATCAGACCCATAAAGAGTCGCAATATCCAACGCTACGCTGCGTCCGATGTACGAGAGAGTTTCGATCCCAACTGTCGCTGTACCGTCACCGGAAGCAAAAGTGCTCCAAGCGTTCGCTCCAGCTACGCTGCGAACCATGCGATCGCGAGTTCGCAACCCAAAAACACCTCAAAGATCACGTTGCCGCAACCCATCTGCACCAGAAACTCTACCGCTGCGACGAGTGTGGCAAAGAGTTCGGCTGGCCGAGCAACCTGGACAGCCACCGTCGCAGCGTCCACAACGAGGAGCGACCGTTCGTCTGCCAGCAGTGCGGAACCAGCTTCAAGGTCAGCAACAGTCTCTGCCGGCATCGAAAGCGCTGCCACATCATGCGCCAGAAGGCACTGCTCAAGGCGAACCCCGAGCTGCGCGAGCCACAACGCCCCCTGCACGCCTGTGACCTGTGCGACAGAACGTTCGCCACCAAGTCCACGCGGGACAACCACCGGCGGAGCATCCACACCGGCGAGCGGTCCTACCTGTGCCAGCACTGCGGGATGAGCTTCAAGGCGAGCTCGGTGCACTCGCCCCACCGGAAGCGCTGTCTGCTGCGGCAGGAGGCTCGGGCGGCGGCGATGGCAGCGCGGGAAGTTATCCGGAAGGCCAAGAAGCCGTTTGCGTGCGAGCTGTGCGGGAAGACGTTCCGGACGGAGCAGGTGCTGCAGAAGCACGGTCGGAATCACCACTCGGGGGAGAAGAAGAGGAAGAGGGTGAAGAAAGCGCTGGTGGAGAAAGAGAAGAAACCGAGGAAAAAGAAGGGGAAGGCTGGTGGGGAGGTTGCTTCCGCGGTTGTCAAGGTGGAAACGGAACGCGAGGTGAAGGAGGAAGTGGTAGAAGAAATTCCCACCATGGTTTGCTGCGTTCCGGGTTGCCTTCCGGCGGACACGAGCGGCGGCCTCGTGCGCGTCGTCAAATTTCCCACCGAGGACGATTTGCGCCGCCGCTGGCTGCAGGCCGTCGAGATCGGCAGTGGAACTGCGCTCGACGATGACGATGCCGACTACCAGCTCTGCACAGGCCACTTTGAGTGGGCCGGGGACAACGAGcaggagtaccgggaaccgacGGTGTTTTTGGGAGGgaGTGTGGCGAGTTGCAGGTTGTGCCATCAGTTCCTGCCGGTGAGCCGGATGGTGCCGTCGGTTGGGGGTGGGACGTTTGCCGATATGGCACTCGATACGGTGGTAGCGCTGGTGCTGCGGATCACGCTGAAGTCGACCGACTTTCTGCGGATGGTGTGCGACGAGTGTCTGGTGAAGGTGGACCTGATTCGTGCCCTGCAGGAGCAGTTTGCGCTGCAGCAGGACTATTACGGTGGGTACCTGGGGAAGGTCAAGCCCAAGCTGGAGATTGAGGAGGTCGAGTGGAAGGCGGAGGTGGTTCCGGAGCATTTTGAGGATGACTGGAAGGCGGAGTCGGAGGAGGAAGTGGGTGACGAGGATGAGGAAGAGTCCGAGGAGGAGAGTTCTTCGGAATCGTCAGATTCGGAGTATTTCGAGGAGGTTGTAGTGAAGAAGCAGAGAGGGAAGCGAAAAGCTCCGGTGAGGAGGACGAAGAAAGAGAAAAAGGTCGTGGTGAAGCGTAAGGAGGGGGAGCCCCAGATGTCGGCACTTGTGCCGAGGACGTGCAACATTTGCGTCAAGGTGTTTGATAACCACGGCGATCTGATGCTTCATCTGATTGAGCAGCACGGAAGTACGGAGGGATTTACGTGCGCCGCGTGTAACGATGGTCACAAGTTCCCAACTATCCAGCAGTACAATTACCATTTGGCTTATCACGACGCCTCGAAGCGACCGAACAAGTGTAGCTTCTGTCCGATTCGGTACCGATCGGTAGCGGCGTTGAAGCGCCATGAAAACTCCAAGCACGGCGCAAGTCACAAGCTCAAAGGACGAATTGCCCGGGAATGCCAGTGTCACGAGTGTGGCAAGGTCTACACCGCCCAGTGGAAGCTCAACCAACACATCCGGCACAATCATAGAGGAGTAATACCGCGATCGCATTGCAAAATATGTCAGAAGAACTTCGCCACTGCGCTAGCCCTTCGAACCCACATTCTGGGCAGTCACGCCGGTCAGCGGCCATTCCAGTGCGAGTCCTGTGACGCTAGCTACCGGACGTCAACCGATCTCAGGCACCACGTCAAGGCCGTCCACGAGGGCAAGAACCCCTTCCGATGCGGATCCTGCGATATCAGCTTCCGCACGAAGCGCGAGTACGTCAACCATCGACACAACGAGCATCGCAACCGAAGAATGTATCATTCCTCCTGCAAGCTATGCCCAGAAATCCCGCAAAACAATACCGATCTCCTCGCGCACATCGCCGCCTGTCACGCCGACGTCGAATATCCGCGCAACCAGTGCCCTCACTGTCCGGAAACGTTCCTCACCGCCCACGGCCAAGGCCAGCACAAACGCCTCGCCCACCCGGAGCATCTCCCGCTCGAGTGTCAAATCTGCCACAAAAAGTACTCCACGAAGCTGTCCCTCAAGGAGCACGTGGACGTCATCCACCTGGGCAAACCTCCCACGATCAAGCGCAAGGGCCGCCACGAGCCCCAGTCCTCGACCTGTCCGACGTGCGGCAAGCAGTTCTCCAGCAAGCAGAACCTCCAGCGGCACGAGAAGGCCGTCCACCTGGGCGAGCGAAACTTCCAGTGCGATCTGTGCCCGAAGGCGTTCAGTACGGCCACCGTGCTGCAGAACCATCGTCGCTGCGTGCACACCGGTGAGGCGCTGCACGAGTGCCCCGGCTGTGGCCAGCGCTTCAAGGAGAACGGCACGTTCTATCGCCACCGGGCTAAGTGCGCCCCGGAAGCGTCCACCAAGAAGGCGGCCAAGTGA
- Protein Sequence
- MPCCVPRCVPAGGSASGLVRFPGADLLRDRWKQAIEAGTGLGLKDGSLRLEVCLEHFAKPEDVREYQEPARFVDKNGLPIELASCRLCLQFQLKSDMVPLLGHLTSLDNLSTILQQTAHIKRSPSDIPTMVCTVCLVKVDLIHALRSQFAAQDALFQSLQSAEATCHLEVVEATVQDEYGEQKLEPLEEDDCEVDFDADDGSNYSEEINQEDIGRKRKRPKKGVKMSSLIARKCYLCKVAPFANPIDLLNHLSKEHTTEGDLSCTECNDGKVFESIQRFNRHMSHHDGEDRPLRCGFCPMRYCDEHGVHAHENREHGTRHEVSVVLHRPTACEECGKMFASTSNKKRHWKEAHGRSSKFECEFCEAELASSQSLHSHVLGHSKPVGHKCEICEMWFRSEAVLQKHLEKVHEGAVYLDCAPCKEQFESEEAFIDHLQRKHRQCETYEYSCSLCLEVPQSAEDLDQHIDQTHKESQYPTLRCVRCTREFRSQLSLYRHRKQKCSKRSLQLRCEPCDREFATQKHLKDHVAATHLHQKLYRCDECGKEFGWPSNLDSHRRSVHNEERPFVCQQCGTSFKVSNSLCRHRKRCHIMRQKALLKANPELREPQRPLHACDLCDRTFATKSTRDNHRRSIHTGERSYLCQHCGMSFKASSVHSPHRKRCLLRQEARAAAMAAREVIRKAKKPFACELCGKTFRTEQVLQKHGRNHHSGEKKRKRVKKALVEKEKKPRKKKGKAGGEVASAVVKVETEREVKEEVVEEIPTMVCCVPGCLPADTSGGLVRVVKFPTEDDLRRRWLQAVEIGSGTALDDDDADYQLCTGHFEWAGDNEQEYREPTVFLGGSVASCRLCHQFLPVSRMVPSVGGGTFADMALDTVVALVLRITLKSTDFLRMVCDECLVKVDLIRALQEQFALQQDYYGGYLGKVKPKLEIEEVEWKAEVVPEHFEDDWKAESEEEVGDEDEEESEEESSSESSDSEYFEEVVVKKQRGKRKAPVRRTKKEKKVVVKRKEGEPQMSALVPRTCNICVKVFDNHGDLMLHLIEQHGSTEGFTCAACNDGHKFPTIQQYNYHLAYHDASKRPNKCSFCPIRYRSVAALKRHENSKHGASHKLKGRIARECQCHECGKVYTAQWKLNQHIRHNHRGVIPRSHCKICQKNFATALALRTHILGSHAGQRPFQCESCDASYRTSTDLRHHVKAVHEGKNPFRCGSCDISFRTKREYVNHRHNEHRNRRMYHSSCKLCPEIPQNNTDLLAHIAACHADVEYPRNQCPHCPETFLTAHGQGQHKRLAHPEHLPLECQICHKKYSTKLSLKEHVDVIHLGKPPTIKRKGRHEPQSSTCPTCGKQFSSKQNLQRHEKAVHLGERNFQCDLCPKAFSTATVLQNHRRCVHTGEALHECPGCGQRFKENGTFYRHRAKCAPEASTKKAAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -