Cqui009017.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Culex quinquefasciatus
Gene Symbol
-
Assembly
GCA_015732765.1
Location
NC:211667476-211675765[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00027 0.0078 16.4 0.6 1 22 258 279 258 279 0.96
2 26 5 1.4e+02 2.9 0.2 1 14 287 300 287 304 0.85
3 26 8 2.3e+02 2.3 0.6 6 23 344 362 339 362 0.90
4 26 0.0048 0.14 12.5 0.1 2 21 379 398 378 399 0.93
5 26 0.12 3.4 8.1 0.1 1 23 406 428 406 428 0.98
6 26 4.3e-06 0.00012 22.0 0.4 1 23 434 456 434 456 0.98
7 26 2.3e-06 6.7e-05 22.9 0.2 1 23 462 484 462 484 0.98
8 26 5.6e-06 0.00016 21.7 3.6 1 23 490 512 490 512 0.99
9 26 0.002 0.058 13.6 1.9 1 23 518 540 518 540 0.98
10 26 0.0057 0.16 12.2 2.5 1 23 546 568 546 568 0.91
11 26 8.2e-07 2.3e-05 24.3 1.6 1 23 574 596 574 596 0.98
12 26 0.061 1.7 9.0 1.1 2 23 891 913 891 913 0.90
13 26 0.46 13 6.2 0.4 1 19 927 945 927 947 0.85
14 26 0.0068 0.19 12.0 0.2 1 20 1061 1080 1061 1082 0.94
15 26 1.6 46 4.5 0.1 2 23 1089 1111 1088 1111 0.95
16 26 4.3 1.2e+02 3.2 0.1 1 11 1241 1251 1241 1262 0.81
17 26 0.29 8.4 6.8 0.5 1 21 1269 1289 1269 1290 0.96
18 26 0.27 7.7 6.9 0.3 2 23 1318 1340 1317 1340 0.93
19 26 0.033 0.95 9.8 2.9 1 22 1353 1374 1353 1374 0.94
20 26 5.1 1.5e+02 2.9 6.8 2 23 1473 1494 1472 1494 0.93
21 26 0.67 19 5.7 0.0 1 23 1501 1523 1501 1523 0.96
22 26 0.02 0.57 10.5 2.7 1 21 1529 1549 1529 1551 0.94
23 26 2.7e-05 0.00078 19.5 1.7 1 23 1556 1579 1556 1579 0.96
24 26 0.045 1.3 9.4 5.3 1 23 1584 1606 1584 1606 0.97
25 26 0.00023 0.0065 16.6 4.7 1 23 1643 1665 1643 1665 0.98
26 26 0.00065 0.018 15.2 0.8 1 20 1671 1690 1671 1691 0.95

Sequence Information

Coding Sequence
ATGAACATCTGCCGGGTGTGCATGGACCAGGACGGGGACGACCTGATGCCGATCTTCTCGAAGCTGGAGGACGCGTTTATTGCGAACATCATCGTGGAGTGCACCTCGATACAGATTCTGGAGGACGACGGGCTGCCGACGGTGATTTGCGGGGCGTGCGTGGACGCGCTCAAGTACTTTATCGGGTTCATCAAGAAGGCGCGCGAGTCGGACCGGAAGCTGCGGAAGATTTTCAAGCCGGAGGGGAGGGAGGGTGGGAAGGTGGGTGAGGGGGATGGGGATGGCGGGGAGGATTGGATGCCGGAGCTGCAGCTGGCGGCGGTTTTCGCGGACGACATGGTCGAGGTGAAGGCCGAGCTGGACTCGGACGGGGAGCGGTTGACGGCGGAGGTGATTCATGAGGATGATGGTGGGGGTGGTGGGGATAGTGATTGGAAGGAGCAGGAATCGGAGGAGGAGAAGCCGAAGAGGAGACGGGGTCGGAGGAAGAAGTTGGAATCGGAGTCGGAGGACGGGAGTTCGGAGGAGGAGGTGGTGGTTAGAAGGGGGAGAAGAGGGAGGAAGAAGTCACGGGCGGATGATTTCGAGGAAGATTCTGGAGGGGAGGACATCTTGGACGAGAAGGAGTTGGCCATTTACGATGTGATTGAGAAGGGGGAAGATTCCTGGGTTTGCTGCGCGTGTTATTTCATCTTTGACAGTGAGGAGGAGGTCAAGGAGCACGGCGAGAAGGTCCACAGCaagaaacggatcgtaaactcGAGAAAGACCTTCGTCTGTAAGATTTGCTTTCGGAGGTATTCGACGGCGTACGCGCTCCGGATTCATCAGCGAAAGACCAAGGAGGCGAATAAGGTTTACGCCTGTACCAAGTGTTCGGCCAGGTTCGTGGACCAGGACCGATGGCGTCGTCGTTCGCACGCCCACAATCATCCGCGGGATAAGGAAGCTTCCTCGTCGAAGGTCATCGTGGCGCAGATTCCCGAAAGGGTTCACGAAGAGTACGGCCGGATATGCTGCGCCCAGGCGTGCTACCAGTCGTTTGCGACGGACGAACTGCTTATCGCCCACGCCCACACGGCCCACAAGGTCAACAAGGTCGAGCAATCGCTGGACAACAAGGACAAGCCCGTTGAATGTCCGGTTTGCTTCAAGCGATTCAACGACGAAGTTGCACTGTCCAGGCATCAAACGCGCAACTACAAACCGCTCAGCCATCAATGTTCCGTCTGCGGGTTGAAGGTCCGGGGCGGGGAGGCCCTCATCACTCACGAACGGTCCCACCGGAACGAGAAACCCTTCGAGTGTGTCGAGTGCCGCAAGAACTTTTCCAGCAAGGGCAGCTTGAAGGCGCACATGATGGTCCACAGCGGGGAAAAACCATTTGTCTGCTCCATCTGCGGGTGGGGCTTCCGCCGGAAACGGAACCTGCAGGTGCACGTGCTGTCCCACTCGGACAACCAGCCGTTCCAGTGCGAAGTTTGCCAGAAGTCGTTCAAGGCGAAGGTTCATCTCCAGTATCATATGCGGACGCACACGGGTGAAAAGCCCTACCCTTGTCGctACTGTGAAAAGGCATTTGCGGATCATACCAATCGACAGCGCCACGAAATGTCCCACACCGGAATCAAACCGTACAAATGCAGCTACTGCGACAAAACGTTCATCCGGAAGCGCTTCCAGGTCGACCACGAGAGCTCCCACACTGGCGTCAAGCCGTACCGCTGCGAGATGTGCAACCGGACGTTCAGCCAAAAGTCCGCCCTCCGCCGTCACCTCGATTCGCACCCGTTGGCGCCGGAGAATGCCGTCGCGTTGGCCGCACCCTCGCCGATGGCACCGCTGTCCCACCATGGTTCCATGTCCTCGCCACCGCCACCTCTAATCATGGGCGAGCCGGGACCCAGCAGTGCTGCGATGGACTACTTTCAGCATCCGCGCAATTTGAGCATCAACATGCACCACGTGTTTGCTTACACCAAGCGTGTAACTTGGAACTGTCAACGgtttccaaaacaaaacacaagTGTTCAAAATTCTGCAGATCTGAAAAAAATGGATCAACCCGGCGGTCCGCGACGTCCCAAGATGTGCCGCGTTTGCCGTGCTCCGGACAACGACGATCTCATCACGGTGCAGCTGGTGCAGGAAGGCGTCTCCGTCGCCACCATGTTTCTCGAGCTGACGGGAATTCAGGTCACAGCGGACCGTAACCTACCCCAGAACGTGTGTCTCGCGTGTTTGGAGCGACTTCGCAGCGCACACCTGCTACGCCGCCAATGTCTCGAATCGGACCAGTTGCTGCGGGCTGAACTTCCGGTTCCCGCTACGAAGGAGGTTGAGGTTGAAACTGTGCCGAAGGTGTCGACACCACCACCTCAGTTAGACGCACCCACGGGGATGTTCAAGCTGGAAATCGAAACGCTCGAGATTGAGTCGGAACCGGAAGAGGTTGTGGAGGAGGAGGAAAACGAGTTGAAGTTCATCGTCGAGAGTGTGGACGAAGTGGAAGAGGAGGACGACCAAACGATTGACATTTTAACGGCGGAGGAGCAACCGGACGGGCAGGTCAAGCAATCGGATGTGATGTATTTGAACAGCTACGACGAGTCGGATTACGAGATTGTCTACCAGGGGGAACACTACGACCGGATCAAGTTCATCGTGGCGCGATGCTGCGGTTGTTCGAGGCGGTTTCCAAACAAAACGGAACTGCTTGAGCATGGTCAGGCGGTGCACAAGGCGCACAATCAGAAGCCAGCGAAGCGAAACTTTCCCCACGAGTGTCCGGTTTGCTTCCGGCAGTTTACGAGCAAGCGTGCGGTTGGGGATCATCGCGACCAGATCGACACGGACTGGTTCCACTGTCGGGAGTGTGACCTGCTGGTGCACAGCCAGCGACAAATCGTGGGTCATTTGGAGCGGGTTCATGGCATTACGGAGCTGGAGGGTGAGAGTGAAGAAGATGGAGACGAGAAGGACGGTGCGGCGTTGACGCTGGCAGCGTTCGACCCGAGTCAGTACGAGCTGACGCGCACCGAGTTCGGGTTCGATCTTGTGGAGTTTACCTGTTGGCGGTGCTGCGGATGTTTGGCAAGTTTTGAGCTGCGGGAGGATTTCGAGCAGCACTCGCGCGAGCAGCATCTGCCGGAGCGAAGGGAGGATGACGGAGATCGGCCGTACGAGTGCAACATTTGCTTTAGGAGGTTCGAGAAACGGGCGTCGTTGATGATTCACAAAAATGGGCCGAAGAAGCGGCGCGTGGTTTGTCGGATTTGCGAGGGGATCTTCCGGGGGGAGACGACCTACCGGAAGCATGCGATGAAGGAGCACGGGATGGTGAACGATGGTGAAGACGTCGGAGATGTCAGCATGCAGGACGTGGAGTTTATCGAGGAACCGCTGGAAGAGGAGGGTCAGGTTCAGGAGATTAGCGATGGCGAggaggatgatgatgatgaggacGACGAAGATCGGGAAGTGACGGGCAAGTACAGCAAGTACAACTCGAGCAAGCAGCGCAAGGAGATGGGACGGGTGCCGTGGAATCTGCTACGGACGGTTGAGGAGCTGGACGGGTACAACGTGGTGGAGATCTTGAAGGAGCGTTGCTGcaactgtttgcagtttttcgattcgGTTGAGGAACTTCACGAGCACACGCAAGTCCACCGGCAGGAAGCCCTAGCGGAAGCAGCTTGTTCCAGCAAACCGATCAAGTACCAGTGCGAGTTCTGCTTGAAGAGCTTCGACCTGGCCCTGGTCTACGTGGTTCACAAGCGGATTCGCGAACAGCGCCAGTTCTTCCAGTGTCGGTTGTGTGATTTCGTGATTGATTCCGAGTCCCGGCTGAAGAACCACATGCTGCACAACGATCAGCACGCCAAGTTCTTCAACCTGATCCGGGAGGACGTCAGCGATCGGTACTACGCGGCCAGTCTGCCAGGCACGCGATGTTGCGGCTGTGGTCAGTACTTTGACGGCGAGGACGCGCTGGAGGAACATTCCCGGGCGATGCACCCGAAAGATCCGGCCAAGGAGAGTACGAAGCGAACGCATAGTTGTAGGATTTGCGGCAAGCGTTGTTATAACCGCTCAGACGTGCTGATTCACCAGAAAAAGAACGGATCAACGATGCGGTACTACTGTAAGCTGTGCGACTTTGAAACGGCCAACGAACCTCGGATGTTGAAGCACCTATACAGTTCGATCCACAACGAAGCGTTCCCAGCGATTGAGGTGAAGAAGATCGAGATTGGCTACAAAAAGGCCGGAGTTATTCGGTACTGCTGCTTCGAAGGGTGTCATCTCCCGTTCCACGACCACCAGAAGTTGTTTGACCACGTTGACGAGCTTCATCTAGCGCAAAAGGTTCGCAACTTGGACGCGGTTGATCAGCAAACCGGGAACCGACTACAGTGCGACTGTTGCCACCTGCACTTTCGAACGCTAACCCTGCTCAAGCAGCACCAAAGTGGCCACCAGCGACCGCTCAAAAGTTACGTCTGTTCCGTTTGTGGCCTCGCCAAACCAAGCAAAGCCGCCCTCGCCACCCACGAACTCCGTCACACCGGCGCGCGTCCCTACCCGTGCACCGTCTGCGACAAACGCTTCTCCTCGACGACCATCCTGAACTCGCACATGAAGTGCCACGCCCCGAAGCAGTACCAGTGTATCGAATGCGGAGAAAAGTTTGCCCGCAGCGAGAACCTCAAGCGCCACATCCGGCACCGGCACGCCGAAGCCACCTTCTGCTGCAGCTACTGTCCGCACAAGTCCAAGACCCGCGAAGCGCTGAACCAGCACGAGCGTTCGCACACCAAAGAGAAACCCTTCGAGTGCCGCTCCGAGGGCTGTCAAAAGCGGTACGCCAGCATCTGTGACCGGAGACGGCACGAAATGGCCAGCCACACTGGCGAGAGACCCCACCAGTGTGACCACTGCACGGCTTCCTTTGTCCGCAAACGGCAACTTACGATTCACGTTCGAAAGCACACCGGAGAGCGGCCCTTTGTGTGCTTAAAGTGTGGCAAAGGCTTCATCGATTCGGCACTGCTGAAGAAACACACCTGCTAG
Protein Sequence
MNICRVCMDQDGDDLMPIFSKLEDAFIANIIVECTSIQILEDDGLPTVICGACVDALKYFIGFIKKARESDRKLRKIFKPEGREGGKVGEGDGDGGEDWMPELQLAAVFADDMVEVKAELDSDGERLTAEVIHEDDGGGGGDSDWKEQESEEEKPKRRRGRRKKLESESEDGSSEEEVVVRRGRRGRKKSRADDFEEDSGGEDILDEKELAIYDVIEKGEDSWVCCACYFIFDSEEEVKEHGEKVHSKKRIVNSRKTFVCKICFRRYSTAYALRIHQRKTKEANKVYACTKCSARFVDQDRWRRRSHAHNHPRDKEASSSKVIVAQIPERVHEEYGRICCAQACYQSFATDELLIAHAHTAHKVNKVEQSLDNKDKPVECPVCFKRFNDEVALSRHQTRNYKPLSHQCSVCGLKVRGGEALITHERSHRNEKPFECVECRKNFSSKGSLKAHMMVHSGEKPFVCSICGWGFRRKRNLQVHVLSHSDNQPFQCEVCQKSFKAKVHLQYHMRTHTGEKPYPCRYCEKAFADHTNRQRHEMSHTGIKPYKCSYCDKTFIRKRFQVDHESSHTGVKPYRCEMCNRTFSQKSALRRHLDSHPLAPENAVALAAPSPMAPLSHHGSMSSPPPPLIMGEPGPSSAAMDYFQHPRNLSINMHHVFAYTKRVTWNCQRFPKQNTSVQNSADLKKMDQPGGPRRPKMCRVCRAPDNDDLITVQLVQEGVSVATMFLELTGIQVTADRNLPQNVCLACLERLRSAHLLRRQCLESDQLLRAELPVPATKEVEVETVPKVSTPPPQLDAPTGMFKLEIETLEIESEPEEVVEEEENELKFIVESVDEVEEEDDQTIDILTAEEQPDGQVKQSDVMYLNSYDESDYEIVYQGEHYDRIKFIVARCCGCSRRFPNKTELLEHGQAVHKAHNQKPAKRNFPHECPVCFRQFTSKRAVGDHRDQIDTDWFHCRECDLLVHSQRQIVGHLERVHGITELEGESEEDGDEKDGAALTLAAFDPSQYELTRTEFGFDLVEFTCWRCCGCLASFELREDFEQHSREQHLPERREDDGDRPYECNICFRRFEKRASLMIHKNGPKKRRVVCRICEGIFRGETTYRKHAMKEHGMVNDGEDVGDVSMQDVEFIEEPLEEEGQVQEISDGEEDDDDEDDEDREVTGKYSKYNSSKQRKEMGRVPWNLLRTVEELDGYNVVEILKERCCNCLQFFDSVEELHEHTQVHRQEALAEAACSSKPIKYQCEFCLKSFDLALVYVVHKRIREQRQFFQCRLCDFVIDSESRLKNHMLHNDQHAKFFNLIREDVSDRYYAASLPGTRCCGCGQYFDGEDALEEHSRAMHPKDPAKESTKRTHSCRICGKRCYNRSDVLIHQKKNGSTMRYYCKLCDFETANEPRMLKHLYSSIHNEAFPAIEVKKIEIGYKKAGVIRYCCFEGCHLPFHDHQKLFDHVDELHLAQKVRNLDAVDQQTGNRLQCDCCHLHFRTLTLLKQHQSGHQRPLKSYVCSVCGLAKPSKAALATHELRHTGARPYPCTVCDKRFSSTTILNSHMKCHAPKQYQCIECGEKFARSENLKRHIRHRHAEATFCCSYCPHKSKTREALNQHERSHTKEKPFECRSEGCQKRYASICDRRRHEMASHTGERPHQCDHCTASFVRKRQLTIHVRKHTGERPFVCLKCGKGFIDSALLKKHTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-