Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:41329623-41341474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.0082 0.23 11.7 0.2 1 18 73 90 73 90 0.94

2 29 0.12 3.4 8.1 5.9 1 23 103 125 103 125 0.97

3 29 0.71 20 5.6 0.3 1 13 158 170 158 173 0.89

4 29 0.011 0.32 11.3 0.6 1 23 188 210 188 210 0.97

5 29 0.031 0.88 9.9 4.2 1 18 253 270 253 275 0.88

6 29 0.15 4.4 7.7 1.5 1 23 283 305 283 305 0.96

7 29 0.032 0.92 9.8 4.4 1 18 320 337 320 342 0.84

8 29 0.015 0.42 10.9 1.5 1 23 350 372 350 372 0.97

9 29 0.042 1.2 9.5 0.8 1 12 432 443 432 446 0.91

10 29 0.0091 0.26 11.6 8.1 1 23 462 484 462 484 0.97

11 29 0.23 6.6 7.1 0.4 1 13 498 510 498 515 0.86

12 29 0.029 0.81 10.0 0.1 1 23 528 550 528 550 0.97

13 29 0.0045 0.13 12.5 0.5 1 23 559 582 559 582 0.97

14 29 0.00029 0.0084 16.3 2.2 1 23 588 610 588 610 0.98

15 29 0.026 0.75 10.1 0.3 1 23 631 653 631 653 0.92

16 29 0.7 20 5.6 1.9 1 23 661 683 661 683 0.95

17 29 0.0049 0.14 12.4 1.8 3 23 721 741 719 741 0.96

18 29 0.0033 0.093 13.0 0.7 2 23 854 875 853 875 0.95

19 29 0.00069 0.02 15.1 0.2 2 23 883 904 882 904 0.94

20 29 0.0087 0.25 11.6 2.1 1 23 923 945 923 945 0.97

21 29 0.016 0.47 10.8 2.5 1 23 953 975 953 975 0.98

22 29 0.018 0.51 10.6 1.9 2 20 1014 1032 1013 1032 0.94

23 29 0.071 2 8.8 0.9 1 23 1096 1118 1096 1118 0.97

24 29 0.093 2.7 8.4 4.5 1 23 1126 1148 1126 1148 0.97

25 29 0.00062 0.018 15.2 2.2 1 23 1153 1175 1153 1175 0.97

26 29 1.8 52 4.3 6.3 1 23 1196 1218 1196 1218 0.98

27 29 0.0024 0.067 13.4 1.6 1 23 1223 1246 1223 1246 0.96

28 29 0.047 1.3 9.3 2.2 1 23 1251 1273 1251 1273 0.97

29 29 0.01 0.3 11.4 4.7 1 23 1287 1309 1287 1309 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.0082	0.23	11.7	0.2	1	18	73	90	73	90	0.94
2	29	0.12	3.4	8.1	5.9	1	23	103	125	103	125	0.97
3	29	0.71	20	5.6	0.3	1	13	158	170	158	173	0.89
4	29	0.011	0.32	11.3	0.6	1	23	188	210	188	210	0.97
5	29	0.031	0.88	9.9	4.2	1	18	253	270	253	275	0.88
6	29	0.15	4.4	7.7	1.5	1	23	283	305	283	305	0.96
7	29	0.032	0.92	9.8	4.4	1	18	320	337	320	342	0.84
8	29	0.015	0.42	10.9	1.5	1	23	350	372	350	372	0.97
9	29	0.042	1.2	9.5	0.8	1	12	432	443	432	446	0.91
10	29	0.0091	0.26	11.6	8.1	1	23	462	484	462	484	0.97
11	29	0.23	6.6	7.1	0.4	1	13	498	510	498	515	0.86
12	29	0.029	0.81	10.0	0.1	1	23	528	550	528	550	0.97
13	29	0.0045	0.13	12.5	0.5	1	23	559	582	559	582	0.97
14	29	0.00029	0.0084	16.3	2.2	1	23	588	610	588	610	0.98
15	29	0.026	0.75	10.1	0.3	1	23	631	653	631	653	0.92
16	29	0.7	20	5.6	1.9	1	23	661	683	661	683	0.95
17	29	0.0049	0.14	12.4	1.8	3	23	721	741	719	741	0.96
18	29	0.0033	0.093	13.0	0.7	2	23	854	875	853	875	0.95
19	29	0.00069	0.02	15.1	0.2	2	23	883	904	882	904	0.94
20	29	0.0087	0.25	11.6	2.1	1	23	923	945	923	945	0.97
21	29	0.016	0.47	10.8	2.5	1	23	953	975	953	975	0.98
22	29	0.018	0.51	10.6	1.9	2	20	1014	1032	1013	1032	0.94
23	29	0.071	2	8.8	0.9	1	23	1096	1118	1096	1118	0.97
24	29	0.093	2.7	8.4	4.5	1	23	1126	1148	1126	1148	0.97
25	29	0.00062	0.018	15.2	2.2	1	23	1153	1175	1153	1175	0.97
26	29	1.8	52	4.3	6.3	1	23	1196	1218	1196	1218	0.98
27	29	0.0024	0.067	13.4	1.6	1	23	1223	1246	1223	1246	0.96
28	29	0.047	1.3	9.3	2.2	1	23	1251	1273	1251	1273	0.97
29	29	0.01	0.3	11.4	4.7	1	23	1287	1309	1287	1309	0.97

Sequence Information

Coding Sequence: ATGGCAACGGAGCAAACCTTGGAGCAACCTACCGAACAGTTACACCAAGGTCATCATCTTACGGTTGTGAAAGAGGAACCTGTGGATGGGTTGGAAACTAGATTGGAAAGCTCGTCTTTCTGCTTCGAAACGGTGACCAAGGAGGAGGTTATTCTAGAGGATCAACCAGAATCTGTGAGCGGGCCTGCAACGGAAATTTCTTCTAAGGAGCACCCCTTCCAATGCACAGAGTGCAATCGATCGTTTGCCAATGTATGGAATCTTAATCGATGCGTTAAGAGACACAATGCTTTGCGACTGGGACTTTACAAATGTAAAGTTTGCGGAAAGTGCTCTAGTGATAGGCATACGCACGTGAGGCACTTGGCCGTCCACAGGAAGGGGTCAAATGCTGAAGATGTTTCGGACTCGAAACCTGTTGGACAGGTTAAGTCAGAAGAATCTGGTGTGTCTGTCGACGAAAATGGCCTTTTTAAATGTCTTGAATGCGATCGAACGTACAAGAAGCGTAACATGGCGGTCAAATGTACAAAACGACACTTGGCAAGACGGCTAGGACTTTTCAAGTGTAAATTTTGTGACCTGCGCGCCGGAACTCTTTCTGACCTTCGAAGACATGAGGCAAGGCACAAACCAAACACGGAACTGTTGCAAGCTGTCGAACCAGCGATTCCAGAACCGAAGAAGGACCTTCCGGACGAAGTCATCATCGAAAATCAGGTGACAGAACATTCTTGCGAACAATCAACGGAAATCTTTAAATGTACCGAGTGCAGTAAAACATACAATACCAGAAATAACCTCAACCGATGCATGAAAAGGCACATTGCAATCAAAAAAGAACTTTACAAGTGTGAGGTCTGTGAGAAGGTTTCCAGTTCTAAGGAAGTACACACAAGGCATGTGAACAGCCACAAACAAGAAACAAATAAACACACACAGCTCGAAAATGGCCTCTTCAAATGTTCCGAATGCGACCGCACGTTCAAGTCAAAGTACTCGGTTAATAAATGTATGAGAAAGCATGTGGCAAGACGGCTTAAACTTTATCAGTGCAAAACTTGTAACCGGGTCTCAGGAACTCTACATGACCTTAAAGAACACGAACTTAACCACAAGAAGAGAGCGGAATTACACCTACAGTCTGTCAAAGCAGCAATTCAAGAGCAGGATAATCCACTTCCTGTCGCGGCGATGAAGGGGAAACCACCGAAGGAGATGGACGGCTCGTCCGAAGCGGTTACGAAGAAAACTCTTAGCAGACATTTAACGGAAGTGACCAAAGAACGCCCCTTCCAATGTTCCGAGTGCAACAAGACGTTTAAGCAATTTGCATTGGCTCTAAGATGTGAAAGAGGTCACAATAATATTAAACTTGGACGCTACAAGTGTGAAACATGTGGAAAGTGTTGTTGTAGCAAGTATGTTCTTAAAAAGCATGAGGAGATCCATAAAAAGGAGGATTATAAATCAGAAGAAGATGATACCCTTTTCAAGTGCTCCGAGTGTCCGCGCCGGTTCAGAGAGCAGTTCCTAGCCCGAAGATGTGCGAGGCGACACTCGGCAAAGCGGTTGGGATTGTACGAGTGCCAAATTTGTAAACTGCGACTGGGAAATTCGACCGAACTTAGAATACATGAACTCGTACACAAGAGAACTGAGCAGGATAAAACGTTTGCGTGCGATGTTTGCGACGCGCGTTTTGCATACAGAGCAAGCATTACAAAACACAAGCGAAGGTACCACACCGGAGAGCTTCGATTTACATGTCACAAATGTAATGTGAAATTCCCAACGAGGGCAGAGCTTCTTACGCACATCACAAGACACGACTGGGACGAAACGAAGCATAAATATTCCGCAAAGCTGGTTAAGGCAGACGACGGCAACTATTTGTGCACCATCTGTAATAAGAAGTTTATCAACCGGGCACCGGCCAATGCTCACGTGTTTCGGCATATGAACTTAATTGAAGGGCTTTTCGTGTGTAAAACGTGTGGTTTGCGATGTGGAGATGCATACGAGCACAAGATACACCTGCAGATTCATAAGAAACCGGAAGAAGTACCCGATGCTTCGGATGGGAAACCACCGACGGAAGGAAAAGATGAAAATCCGTCAAAGGAGGGCGAAACAGCAGGAAAATCTACCGCTCTCGATTGCAAAACCTGTCGTAAGCGCCTACGCAATAAGCAATCCCTCGAGAGGCATGAGATTACCCATCGGATAAGAAAAAAGAACTCCACAGATTATGCAGCAGCACAAGCGGCAAAAAAGGGTAACAACACTGAGGAAGCTGGCGCCTCTTTTTGCTACGAAACGGTGACGAAGGAAGAGCTGATCATTGAGGATGacgaggaggaaaaaaaatctcgaaatttgtTGGAAGATAATCACGTCAAGGAGGATGAGGCCGGAGGAGGACAGGAGAAAGAATCTTGTGAATCTGTGATGAAACAAAGTGAACTCACCGAGGGAGCGACCCAGCAGAACGAAAACGAGatttccaAGAATGATAATCTTGAACAACATTTGCAGGAGGACTCGTCTTTCCGGATGGAATGTGATATCTGCCAGAAgAGTTTTTTGAGCAAGCGTaattttgaagcacatcaaACACTTCACGAAAAGCGTCAAATTCCACTAGAATGCCCGAGATGTCAAGAGGAATTCGACGATAAATACAGCTTGACGAAGCACTATGAAGCCCACGAAGACGTGGTCAAATCGAAGTATGACGATTTGCTGGTGGAAGATGGAGACGGTCACAGATGTTTGCTGTGTgataaaacgtttaaaaatcgcgaaaaaatcatAGGTCACGTCCAGAGACACATGAACATTATCGAGGGCGTTTATCACTGTAAAGTCTGTGGTTTGCGATGTGGAGGAAACAGTGACTACCGATTACACATCAAGATTCACACGGATAACGCCGCCGATCAGAGGGCGCTTCCGAGAGAGATTGGGGGCGTTCACACGGATTACGACCCGCCCTCCGGTCAGGGTGAGGCCTGCGGAAAATCGGATCTACCACTGCACTGTAAAACGTGCAATCTGTTTTTCAACAGCAAGACAAATCTGAACGTTCACCTGTGGAAGTCGAAGCTCAGAATCATACGGCCAAATTTTACCCCTGGAGAGTCAGTTTCTAAAGTTCCAACGCAACGTACCCAACATTCAACGGTTAGTCAAAATCCATCCAAACCACAGAAAAGAAGAAAACCAAGAACACGCCTTCTCAAGAGAGATGATTCGAAAATTTTCACGGATGAAAAGGGCTTCTACAACTGCACCAAGTGCGACTATAAGACTGTTAAACCAAACATGTTTAGAGGTCATGTCCGTGGCCATAGGGCGGTTGAGGTTGGCGTGTTCTCGTGCGAGGTGTGTCAAATGcgCTTCCCAGACAAAAggcatttattttttcataagaaAACTCATTTAAAGGAAAGATTTGAGTGTCTTACATGCCATCAGaaatttgcaacaaaagGTGAACTCTTCAAGCATCGAATCATTCATACCAAGAACGTGATAACGAAGCAATTTATGGACAAAGTTACCGAGGACGAGAAGGGCGTATTCTCCTGTTCAATTTGTGGCAAAACTCACACGGAACGGAAACATGCCTTCAGCCACTTCCGCACACACGTGACCGAAAAATACATGTGTCAAATCTGTGAAAAGCGATGCGGATCCAAGAGAGATCTCACACTACACATCGAAAGTCAACACGAAAAACTGCGTTTCAGGTGTAGCACGTGCAAAGAGAGATTCGAGACCAGAACAGTCCTGTTTGAACACAAACAGGAGCACAAATCAGATTCGAAAAAGATTCGGCGATTTGACGACCGCTATCACTGTACGCGGTGTGACAAAACGTATTCGAGGCGGGAAAATGCTTTAAACCACTTTAAATCGCACGGTTCTTCGGAAGAAGATGAGGCGCAGTCCAAAGATTCCCAAAAAGATGGTGAGTCTAACTTAGAGCCAAAGATGCAGAAAAACGACGAACCTGAAGGAGATGAGTAA
Protein Sequence: MATEQTLEQPTEQLHQGHHLTVVKEEPVDGLETRLESSSFCFETVTKEEVILEDQPESVSGPATEISSKEHPFQCTECNRSFANVWNLNRCVKRHNALRLGLYKCKVCGKCSSDRHTHVRHLAVHRKGSNAEDVSDSKPVGQVKSEESGVSVDENGLFKCLECDRTYKKRNMAVKCTKRHLARRLGLFKCKFCDLRAGTLSDLRRHEARHKPNTELLQAVEPAIPEPKKDLPDEVIIENQVTEHSCEQSTEIFKCTECSKTYNTRNNLNRCMKRHIAIKKELYKCEVCEKVSSSKEVHTRHVNSHKQETNKHTQLENGLFKCSECDRTFKSKYSVNKCMRKHVARRLKLYQCKTCNRVSGTLHDLKEHELNHKKRAELHLQSVKAAIQEQDNPLPVAAMKGKPPKEMDGSSEAVTKKTLSRHLTEVTKERPFQCSECNKTFKQFALALRCERGHNNIKLGRYKCETCGKCCCSKYVLKKHEEIHKKEDYKSEEDDTLFKCSECPRRFREQFLARRCARRHSAKRLGLYECQICKLRLGNSTELRIHELVHKRTEQDKTFACDVCDARFAYRASITKHKRRYHTGELRFTCHKCNVKFPTRAELLTHITRHDWDETKHKYSAKLVKADDGNYLCTICNKKFINRAPANAHVFRHMNLIEGLFVCKTCGLRCGDAYEHKIHLQIHKKPEEVPDASDGKPPTEGKDENPSKEGETAGKSTALDCKTCRKRLRNKQSLERHEITHRIRKKNSTDYAAAQAAKKGNNTEEAGASFCYETVTKEELIIEDDEEEKKSRNLLEDNHVKEDEAGGGQEKESCESVMKQSELTEGATQQNENEISKNDNLEQHLQEDSSFRMECDICQKSFLSKRNFEAHQTLHEKRQIPLECPRCQEEFDDKYSLTKHYEAHEDVVKSKYDDLLVEDGDGHRCLLCDKTFKNREKIIGHVQRHMNIIEGVYHCKVCGLRCGGNSDYRLHIKIHTDNAADQRALPREIGGVHTDYDPPSGQGEACGKSDLPLHCKTCNLFFNSKTNLNVHLWKSKLRIIRPNFTPGESVSKVPTQRTQHSTVSQNPSKPQKRRKPRTRLLKRDDSKIFTDEKGFYNCTKCDYKTVKPNMFRGHVRGHRAVEVGVFSCEVCQMRFPDKRHLFFHKKTHLKERFECLTCHQKFATKGELFKHRIIHTKNVITKQFMDKVTEDEKGVFSCSICGKTHTERKHAFSHFRTHVTEKYMCQICEKRCGSKRDLTLHIESQHEKLRFRCSTCKERFETRTVLFEHKQEHKSDSKKIRRFDDRYHCTRCDKTYSRRENALNHFKSHGSSEEDEAQSKDSQKDGESNLEPKMQKNDEPEGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -