Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:192987442-192989234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00036 0.01 16.0 1.1 1 23 7 29 7 29 0.98

2 10 1.5e-05 0.00043 20.3 0.0 1 23 35 58 35 58 0.94

3 10 0.00015 0.0042 17.2 0.0 1 23 64 86 64 86 0.98

4 10 4.4e-06 0.00013 22.0 2.0 2 23 92 113 92 113 0.98

5 10 0.001 0.028 14.6 0.2 2 23 167 187 166 187 0.94

6 10 4.2e-06 0.00012 22.1 4.1 1 23 193 215 193 215 0.99

7 10 1.7e-05 0.00049 20.1 1.9 1 23 221 243 221 243 0.98

8 10 8.2e-08 2.3e-06 27.5 2.1 1 23 249 271 249 271 0.98

9 10 2.5e-05 0.0007 19.7 1.1 1 23 277 299 277 299 0.98

10 10 0.015 0.42 10.9 1.6 1 21 305 325 305 327 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00036	0.01	16.0	1.1	1	23	7	29	7	29	0.98
2	10	1.5e-05	0.00043	20.3	0.0	1	23	35	58	35	58	0.94
3	10	0.00015	0.0042	17.2	0.0	1	23	64	86	64	86	0.98
4	10	4.4e-06	0.00013	22.0	2.0	2	23	92	113	92	113	0.98
5	10	0.001	0.028	14.6	0.2	2	23	167	187	166	187	0.94
6	10	4.2e-06	0.00012	22.1	4.1	1	23	193	215	193	215	0.99
7	10	1.7e-05	0.00049	20.1	1.9	1	23	221	243	221	243	0.98
8	10	8.2e-08	2.3e-06	27.5	2.1	1	23	249	271	249	271	0.98
9	10	2.5e-05	0.0007	19.7	1.1	1	23	277	299	277	299	0.98
10	10	0.015	0.42	10.9	1.6	1	21	305	325	305	327	0.94

Sequence Information

Coding Sequence: ATGGTGGAAGATCGTCGATATCGTTGCGGTAGCTGCCCGCGCAGCTTCCAGTACATGGCACATCTGACCGTTCACGAGCGCATCCACAGCAAAGTCCGGCCGTACATGTGTCCGGAGTGCGGCAAGCAGTTCATCCAGTCGGGCCAGGTGGCGCGCCATGTGAACGGAGTACATCGCCGTGCCAGGCCGTACGTTTGTGAGCTTTGTGGGGCGCGGTTTGTCCAATCTGGGGCGTTGGACACTCATCTGAAGGGTCACCGGGGCGAGTGGGAACGGTGTGAGGATTGTGGGAAGGAGTTCAGCCACGTGTGGAGTTTGAAGCGACATCGGAAGGTGCACGAAGAAGTGGCGGTTGAAGAGGATGATGTTGAGGAGGTTGTGCAGAGTGCAGTTGGGGTGGAAAATTTGGAAGTTGTAGAGTCAACCAATCTTGTTGTTCAGGAGATTCCGGAAGAAACTAATGATGTTGTGAAAGCAGGACGTACTACTAAGCTGTTACCTTGTGACGTTTGCGGTCGTAGCTACACCAGTTGGTACCTGAAGATCCACAAACGAGGTCATTCTGGAGAACGTCCCTTCCAGTGTGAACTGTGTCTCAAATGTTTCAAACGACCGAACGAGCTGAAAACCCACCTTCGACGACATTCCGGAGAACGACCCTTTCGATGCTCCATATGCTTCAAGCAGTTCACCCTGTCCGGACAGCTGAAGAAACACGAGCGCGTGCACAGTGGAGAAACCCCGTACGAATGTGGCGTCTGCGGCAAAAAGTTCAAACGTTGGGGTCACCTTCGAAGCCATCGCAGACTGCACAACCCAGTGGAGTTGTTCAACTGTGACCAGTGTTCCCGCCAGTACACCCAAGCTGCCCAGCTCAAGATTCACCTGCGAAAGCACCTCCAAATGCGAACCTACTCCTGTGGAGTTTGTGACAAAAGTTACTTCAAGCCATCGATCCTCAAAGCACACCTCAACTGTCACGTCAAGACACGAACCCTAAATTGA
Protein Sequence: MVEDRRYRCGSCPRSFQYMAHLTVHERIHSKVRPYMCPECGKQFIQSGQVARHVNGVHRRARPYVCELCGARFVQSGALDTHLKGHRGEWERCEDCGKEFSHVWSLKRHRKVHEEVAVEEDDVEEVVQSAVGVENLEVVESTNLVVQEIPEETNDVVKAGRTTKLLPCDVCGRSYTSWYLKIHKRGHSGERPFQCELCLKCFKRPNELKTHLRRHSGERPFRCSICFKQFTLSGQLKKHERVHSGETPYECGVCGKKFKRWGHLRSHRRLHNPVELFNCDQCSRQYTQAAQLKIHLRKHLQMRTYSCGVCDKSYFKPSILKAHLNCHVKTRTLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400838;
90% Identity: iTF_00400838;
80% Identity: -