Cqui002867.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:112475394-112478326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0036 0.1 12.8 1.8 1 23 343 365 343 365 0.96 2 14 0.0007 0.02 15.1 0.9 1 23 371 394 371 394 0.94 3 14 0.004 0.11 12.7 0.4 1 23 400 423 400 423 0.97 4 14 0.07 2 8.8 0.1 1 23 435 458 435 458 0.94 5 14 6.9e-06 0.0002 21.4 0.2 1 23 498 521 498 521 0.93 6 14 0.00048 0.014 15.6 4.0 1 23 530 552 530 552 0.97 7 14 1.8e-05 0.00052 20.1 1.2 1 23 558 581 558 581 0.97 8 14 0.0028 0.08 13.2 0.9 1 21 587 607 587 610 0.91 9 14 6.6e-05 0.0019 18.3 0.1 2 23 621 643 620 643 0.96 10 14 0.072 2 8.8 0.1 3 23 651 672 649 672 0.92 11 14 0.0035 0.1 12.9 1.4 1 23 679 702 679 702 0.91 12 14 2e-05 0.00057 19.9 0.2 2 23 709 730 708 730 0.96 13 14 5.1e-05 0.0014 18.7 1.9 1 23 736 759 736 759 0.97 14 14 0.00064 0.018 15.2 0.7 1 20 765 784 765 786 0.93
Sequence Information
- Coding Sequence
- ATGCCTTGCTGCGTCGCCGGATGCCCCGGAAGTGTCCGCCTGGTTCAGTTCCCGTCCGACGATACGCTCCGGCAACGTTGGCTCGACGCTGTCGCGCTtgccaccggaaccggttcgaTCGTAGTCGAGGAGAAGCAATCGCTGGAGCTGTGCGAAGACCACTTTGAAGGCGATGCGAGTTCTGCGGAGCGCTACCGCGAACCGACGCGGTTCAGCGATCGATCAGGACATCCGGTGGAGCTCGGCAGCTGTCGGTTGTGTCACCGGTTCGAGGTTGCTTCTCGATTGTACTCGCTGGATGAACCGATGGCCGATGTGGCCATCGCGACAGTTTTGCGGGATTTGATTAAGGTTAAGCTTGAACGAAGCGATGTCCAGCAGTTTGTTTGTGGAGTCTGTTTGACCCAGGTCGGGATGGTTCTGACCATTCAGAAGTCTTTCGTAGTCAAAGGAGATCCTGACGTTGAAAATCTGGATAGCATCGACCCGCTAGCGGAAGTGACCTGCTGCCGGCTGTGTCATCGTTACGAACCCACCGTTCAGATGTGCTTCCTGGATGGCGACCTGACGGATGGCGTGAGTATCGGTTCGACGCTGAGCGCGATCCTCCAGTCGGGAGACGACTTGGCGCAGCTCATCTGCTTGAGCTGCTTGGCAAAGATCGATTTGATGCGAAGCGTTCAGAGCTTCTTCGTCGGTAAGGATGAAGAGTTTCGGGGTTGGAAAAGGGAGGGTTTGGTAACGGTGGATCTGGACTGCCATCCAGAGCTGATGCTTGAGGTGAAGGTGGAACCGGTTGAGATTCAGGAAACGGCTAGGGAGACACGATCGAGGAAGGCTAAGGGGAAAGTGGTGAAGTTGGTCAAGGATAAGAAGGAATCGGCTGAGGTTCAGAAGACGGTGAAGGTGACAAGACAAAAGAAGGCGAAAGGGTTAAAATTGGTCAAAGAGAAGAAGGAATCGGAGGTAAAAGAGGAAGCACAAGTTGTGAAGGAAGAATTGAAGCTGAACGAAGAGAAGGCGCAGTTTGAGTGCAAGATCTGCGACAAGAAGTTTCAGAAAAAGATTAGTCTTAAATTTCACCTGCTGATTCATACGGGCGAACTTCCGCACAAGTGTTCGCAGTGCGATGCCAGCTTCCGGATGAGTACGGAGTTGAGCAAGCACGTGATGGGAGTTCATGAGGGTAAGACACCGTACGATTGCAAGGAGTGCAATGTTCCACTAGCTACGAAGACGGAATACTACCGGCATCGAAGGATGGCCcacactacaaaaatttacaagtaCGACTCCTTTTTGTACCGATGTCTGGTCTGCGAAGCGACCGGCAAAAATGTCGGCGAGCTGCGCAAACACATCGAGGCGTTTCACGACGAAAGCTATCCGTATCTGAAGTGTCCGGAATGTCCGCAGTTACAGCTGACGTCCACAACTCACGTCAGAGTTCACGGGTACGACAAGCATCCAGGAAGCGGAACCGGCGAGCGATTCGTTTGCGACAAGTGCGGCAAAGACTTTGCCAGGAAGACCGCGCTGAAGAAGCACGTGCTAGCTGTGCATTCGGAACCCGGGACAACGAAGCGATTTCCCTGTCCGTACTGCGAAAAAACGTTTCGCTTGTACTCTTCGTACCACCGGCACAAGGACACTCATGCTGGAATCAAGCGGTACGCTTGCACGATCTGTGAGCAAAAGTTCAGCCATTCGCCCAGTCTGAAGAACCACATCCGGAACGTTCACACGCTGGAAAAGCCGTACCGCTGCGAACTCTGTGGAGATTGCTTCCGGAACGGATCCTTGCTGAACAAACATCGAGGCGCAGTTCACTCTCCGAGTGACGCCATCTTGGAGAAGGTCTCGTGTCCGATCTGCCTCGAGGTGTTCCCCACCAGGTCCCTGCTTCAGCAGCACGTGCGAAGCGTCCACGAGGAACGGCAGGAGTTCGGATGCCTCGAGTGTGGCGAGGTTTTCAACAGCTTCGCCGTACTCAAGGACCATCGTGCGTACCAACATCCGGAAGTCGGTCTACCGTTTCCGTGCGAAACGTGCGGCGAGCAGTACGAGCAGAAGGTACAGCTGACCAAGCACTGCCGGAACGCCCATCCAGAGCAGAACAGGCTCGTCTGTGCGGAGTGCGGCAAGCTGTTTAGCAGCGCGTCTACCCTGAGACAGCACCGGGAAACTCACCGTGACGTCCGGAAGTTCCGCTGCACGTACTGCGAGCAGACGTTCGCCCAGCGCACTCCGCTCAAGAACCACATCCGGAACAAGCACACCGGTGAGAAGCCGTTTTCCTGCGAAACCTGCGGTAAGCCCTTCAGTGATAGCTCAGTTTACTATCGGCACCGGACCAAATGCTTTAGAGAGCATGAAGCGAAGAACAAATCGGAAGATCCGTCACTTGTTAAGCAGGAATGTTAG
- Protein Sequence
- MPCCVAGCPGSVRLVQFPSDDTLRQRWLDAVALATGTGSIVVEEKQSLELCEDHFEGDASSAERYREPTRFSDRSGHPVELGSCRLCHRFEVASRLYSLDEPMADVAIATVLRDLIKVKLERSDVQQFVCGVCLTQVGMVLTIQKSFVVKGDPDVENLDSIDPLAEVTCCRLCHRYEPTVQMCFLDGDLTDGVSIGSTLSAILQSGDDLAQLICLSCLAKIDLMRSVQSFFVGKDEEFRGWKREGLVTVDLDCHPELMLEVKVEPVEIQETARETRSRKAKGKVVKLVKDKKESAEVQKTVKVTRQKKAKGLKLVKEKKESEVKEEAQVVKEELKLNEEKAQFECKICDKKFQKKISLKFHLLIHTGELPHKCSQCDASFRMSTELSKHVMGVHEGKTPYDCKECNVPLATKTEYYRHRRMAHTTKIYKYDSFLYRCLVCEATGKNVGELRKHIEAFHDESYPYLKCPECPQLQLTSTTHVRVHGYDKHPGSGTGERFVCDKCGKDFARKTALKKHVLAVHSEPGTTKRFPCPYCEKTFRLYSSYHRHKDTHAGIKRYACTICEQKFSHSPSLKNHIRNVHTLEKPYRCELCGDCFRNGSLLNKHRGAVHSPSDAILEKVSCPICLEVFPTRSLLQQHVRSVHEERQEFGCLECGEVFNSFAVLKDHRAYQHPEVGLPFPCETCGEQYEQKVQLTKHCRNAHPEQNRLVCAECGKLFSSASTLRQHRETHRDVRKFRCTYCEQTFAQRTPLKNHIRNKHTGEKPFSCETCGKPFSDSSVYYRHRTKCFREHEAKNKSEDPSLVKQEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400661; iTF_00400825; iTF_00401791;
- 90% Identity
- iTF_00400661; iTF_00400825; iTF_00401791;
- 80% Identity
- iTF_00401791;