Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: cN-IIIB
Assembly: GCA_015732765.1
Location: NC:87958727-88005842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00013 0.0038 17.3 1.0 1 23 270 293 270 293 0.97

2 19 0.0022 0.062 13.5 0.4 1 23 298 320 298 320 0.97

3 19 0.0043 0.12 12.6 3.4 1 23 325 347 325 347 0.97

4 19 9.4e-06 0.00027 21.0 1.2 1 23 352 374 352 374 0.98

5 19 2e-06 5.6e-05 23.1 3.6 1 23 380 402 380 402 0.98

6 19 0.0099 0.28 11.5 0.2 1 22 408 429 408 432 0.90

7 19 3.3e-05 0.00094 19.2 1.2 1 23 1080 1103 1080 1103 0.91

8 19 6.2e-05 0.0018 18.4 0.3 1 23 1109 1131 1109 1131 0.98

9 19 0.0012 0.033 14.4 0.1 1 23 1137 1161 1137 1161 0.97

10 19 0.024 0.69 10.2 3.5 1 23 1167 1189 1167 1189 0.98

11 19 0.0003 0.0085 16.2 5.4 1 23 1195 1217 1195 1217 0.98

12 19 0.15 4.4 7.7 1.0 1 23 1363 1386 1363 1386 0.93

13 19 0.057 1.6 9.1 0.4 1 23 1390 1413 1390 1413 0.89

14 19 8.9e-05 0.0025 17.9 4.2 1 23 1746 1769 1746 1769 0.97

15 19 0.00015 0.0043 17.2 0.3 1 23 1775 1797 1775 1797 0.99

16 19 0.7 20 5.6 2.3 1 23 1803 1825 1803 1825 0.90

17 19 0.028 0.8 10.0 4.2 1 23 1831 1853 1831 1853 0.96

18 19 0.00035 0.01 16.0 4.8 1 23 1859 1881 1859 1881 0.98

19 19 2.2 62 4.1 3.6 2 23 1888 1910 1887 1910 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00013	0.0038	17.3	1.0	1	23	270	293	270	293	0.97
2	19	0.0022	0.062	13.5	0.4	1	23	298	320	298	320	0.97
3	19	0.0043	0.12	12.6	3.4	1	23	325	347	325	347	0.97
4	19	9.4e-06	0.00027	21.0	1.2	1	23	352	374	352	374	0.98
5	19	2e-06	5.6e-05	23.1	3.6	1	23	380	402	380	402	0.98
6	19	0.0099	0.28	11.5	0.2	1	22	408	429	408	432	0.90
7	19	3.3e-05	0.00094	19.2	1.2	1	23	1080	1103	1080	1103	0.91
8	19	6.2e-05	0.0018	18.4	0.3	1	23	1109	1131	1109	1131	0.98
9	19	0.0012	0.033	14.4	0.1	1	23	1137	1161	1137	1161	0.97
10	19	0.024	0.69	10.2	3.5	1	23	1167	1189	1167	1189	0.98
11	19	0.0003	0.0085	16.2	5.4	1	23	1195	1217	1195	1217	0.98
12	19	0.15	4.4	7.7	1.0	1	23	1363	1386	1363	1386	0.93
13	19	0.057	1.6	9.1	0.4	1	23	1390	1413	1390	1413	0.89
14	19	8.9e-05	0.0025	17.9	4.2	1	23	1746	1769	1746	1769	0.97
15	19	0.00015	0.0043	17.2	0.3	1	23	1775	1797	1775	1797	0.99
16	19	0.7	20	5.6	2.3	1	23	1803	1825	1803	1825	0.90
17	19	0.028	0.8	10.0	4.2	1	23	1831	1853	1831	1853	0.96
18	19	0.00035	0.01	16.0	4.8	1	23	1859	1881	1859	1881	0.98
19	19	2.2	62	4.1	3.6	2	23	1888	1910	1887	1910	0.97

Sequence Information

Coding Sequence: ATGAGCCACTTGCCAGAAAGCTTCGACGCGATGCAGAAGCGCATTGCTTTTGTGCAGCAACACTTTGGCTTGCAGCTTTGCCGTTTTTGTGGCACCGAAACCCGCGGGCTGTTGCGGATCTTCACCGAGGATCGCCAAACTTTCAACGCCGAACGTAACATTGACCAGCTGCTGGAGAAGCAGTTTGTGCAGTTTGTTCCAGAGAATGAGGCCGGATTGCCAAATTTTATCTGTGAAAAGTGCGTGGATAGTTTGGttcggtggaaccggttccaggagACGTTTAGTGCGACGACCAAGCTGCTGCTCAAGGTGCGGGAACAGCTGGTCGTCGATGTTGGAGCGATCAAGGTCGATCCGGCGCTCGCCAGCGAGGAAGATGACGACGACGTAAGTTATGAGGAATTTGAGGAGGAATCGCAGGAGAAGGTGTATCCTGAAGACCATGATGTTTACGAGATTGAGTACGTGCACAATTTGCCGGACAACGTGACGGTTGAGGACGTGACGATCATTGAGACGATCGACGAGGAGTTTGATCTGCCGTTGAGGGAAGAGATCTTGATCGAGACTAAAGAAGAGTCGAATGAATCGGAACAGTTTATCGGATTTGATGAAAAGGAGGAAGAGAAGCATGTTATCGAGCTGCAGACAAGAAGCCGAAAGAGGAAGAGACGTCTGAGTCGAGACTCTGAAGAACCTGCCCCAAAGTCAACAACCCCTCAGCAATGTCCAATTTGTGGAGTTCTGGTCAAGGTTAAGATGAAGCATCACCTGTTGCGCCACTCGGACCCCGAGGGACGTCCCTTCAAATGCACCCAGTGTGACAAATCGTACTCGATCAAGAAGACACTCGCCGATCACATCCGACAGGTCCACCAGAACATCCGCTACGCTTGCGATGTGTGCCAAAAGCAGTTCGTCAGCCGGGACGTGCTGCGCGTCCATAAGAAGCTACACTCCAACGAGCAGCACCGCTGCCAGCACTGCGGTCAGACGTTCCTGCAGCGAGTCTACTTGCTCAAACATATGGCCGTGCATGAACAGAAGCGGTTCACCTGCGAAGACTGCGGCAAGACGTTCCGATTTAAGGAACTCATGAAACAGCACGCCCGAATTCATACCGGAGAAAAGCCTTTTCCCTGCGGATCGTGTGATAAAAGCTTCCGAACGTCGACCCACCTGAAGCAACACATGCGATCCCACACGCAAGCCAAAGTATTCAAGTGCAAGCTCTGTCCAGTGGCGTACGCCAACAAAAAGTCGCTGGATCGGCACGTGGCTCGCGGACAGCATCAAGTTGAAGTCAAACACAAGGGCATTTCACGTCTGGTCGTGGAGGTGCGTCGTGGCATAATGGTTGGCCAGCAGCGATTCCGCCTGAGCGAGGTTCCCCTGCTGAACCGGGACCACGTCAAGATTCGTGACCCGGACAAGGTCGAGCACATGCTGAACGAGCTGGTCGCGGGCGGCACCGAAAAGCTCCAGGTCGTGACGGACTTTGATTATACAATCACCAAGCAGCGGCTGACGAACGGCGAGAAGATTCTGACCAGCTTCGGGATGTTCAACGAGTGCAGGTCGCTGCCGGTGAGTGTGCTGGAGGAGTCGAAGAAGCTGTTCCACAAGTATAGGCCCATAGAGATCGATCCGCACATGCCGATGGAGGACAAGGTGCGGTACATGATCGAGTGGTGGACCAAGACGGGAGATTTGCTCAAaGGCTTCCCGCTTCCTCAAGAGGAAATCGCCGAGGTGGCCAAACGCTTCAAGGACGGTCTCCGGGACGGAACCCCGCAAATGTTCTACGACCTGGACCAGCTGGGCGTCCCATGTCTGGTATTCTCCGCCGGCCTGGGCGATTCCGTGATATCGGTCCTCCGCCAGGCCAACGTCATGTACCCGAACGTGAAGGTCATCTCGAACTTCCTGCAGTACAACCCGGACGGAACGCTCAACGGTCTCCAGGACAAAATGATTCACACGTTCAACAAGAACGAGACGGCGCTGAAGGGGACGGACTATTACGACCTGGTGCACGACCGGGACCACGTGATCGTGATGGGTGACTCGCTGGGTGATGCCGGAATGGCCGACGGAATTCCGTCCTCGTCGCACGTGCTCAAAATTGGGTTCCTCTTTGATCATCCGGAACAGAACCTGCCCCGGTACATGGACACCTTCGACATCGTGCTGATCGATGACCAAACCATGGACGTGCCCCGAACGATCGTCGAGATGGTGAAGAATAAATCTCACAATCATTTTCGTTCCGTCGCTCGGCCGCGAAAGTCGCGCAAAATTTTGCTCTCTggtgaaaaagttttcaaacaaattttcagtgCCGAAAAAATGGAGCGTCCGAAGCGCGAGGATTTCGACAAGATTTGCCGGCTCTGCCTGAAGAGTGCCAGCCTGGTGAACATCTTCGACCGGAACCCGAAAACGCAGCAGGAATCGCTCAGTACGCTGGTCCGGGAAACGGTCGAAATGCTCGGGCTGACGATCGACCCGGACGATAACTTCCCGCGTAAAATGTGCCTACCGTGCAAAGACTCGTTGCGCTCGCTGTACAAATTCAGAAACCAATGCCAAGAGGCGAACGATCTGATACTGGAAGTTCTCTCTAGCTTTGAACTAACTGTAGCACAGGAAGTCCCTAGCAAATTGACAGTTTCAGTCCCAGAGTCCCAACCTAAACTATCCGAAGAATTTATCTCCGTCAAAGCGACAAGCACTCTGATAAAGGAAGACATTCCCGCTATCGATGATCACGATGAACCGGTGGAACTCTCGGAGCAAATGGTTCTGGAGGCCGACTCGAGCAGTGCGCTCAACGTGTCGATTGTGAAGAGCGAAGCGCCGAGTACGGTGACGGTGAGCGAAGAGTACGAATACCTGGAGCAGGAAAGCGAACCAGACGACGGGGAGCGCGATGGTAAGGTGGAAGAGATGGAAGCGAACGCTGGGCAGGATGTGTACACGATCGAAATGCAAGCCGACGAGGCGGAGGAAGAGCGGGAAGACGGTGGCGGGGATGTTCAGAATTTTGAGGTCTATCTGGAAGAGAATTCTGGTTCCGATGAGGAGGAAGAAGCGAAAAGTGAGGATCAGTCTGAACAGCTGCAGGTGGCAACGGTCAAACGCGGAAGCGTAAAGGGTCAGCTGTGCACGATATGTAACAAGTATTCGACCTGCCTGAAGTATCACATGATGTATCACACCGGAGAGCGACCGTACTCGTGTCCGCATTGCGAAAAGTCCTTCCGGACATCCACAAAGCTGAAAATTCACGTCGACGGGGTGCATCTCAAGCTGAGGAAGTTCACCTGCGAGGTGTGCAATAAAAAGTTTCTGGACGCGGGAAATCTCAAAAGTCACATGGCTACGCATGCCGAGACGAGGAAGTATGTCTGCGACTACGAAAACTGTGGGAAGGCGTTCGCTTTGCCGGGAACGTTACGGGTTCACAAGCTGACGCACACCCAGGACAAGCAGTTCGAGTGCAGTTTCTGTCATAAGTCATTCTTGTACAAGTGGCTGTTGGTGAAGCATGAGCGATCGCATACCGGCGAGAAGCCGTACGAGTGCGAGGTGTGTCACAAGAGGTTCTCGACCTCGACCCATGCGAAAACGCACCAGAAAATTCACGATCCGTTCCGCGAGAAACCGGCGAAGACTCCGAGGAAGAAGAAGCGGCAAGCCGGGGAAGAGTCCGACGATGCGGTGGAAGTTGTGgtgtcaATCGACCCGTCCGGCCCATATCCGAGGAAAATTTGTCAAGTCTGCAAGGATTTCCTGCGCGCGCTGCACAAGTTTCGCCAGCAAGCCCAGGAAGCGAACGATTTGGTGATGGAAGCGTGCCCGGGGGGCGACCTGCAGATGCAGCTAGCGCTGCCTGTTCCAGTGCGCTCTCCGCCCTTGGTTCTTCCTCGGCCCCAGATTCCATCTCCGAGCGCTGCTGTTGTCGTGAAAAATGAACGCACAAATGTGTCCCAAAAGTCGCCTTCTCCGAGAGCTACAAGGCGCACAAGTCAGGACAAACCGTACAAGTTGGCGCGTGCCGTTCAACCAGTGCGAAAAACCTATTCCTGCCATTTGTGCGATTTCAAAGGGTTCTCGCCGAAAGCTCTGTCAGCCCACCTGAGCAAGGAACATCCAAGTCGGTACACGTGCGACATATGCGGCCAGCAGTTCATGCATGGATCAGGCCTGTTGATGCACAAGTATGAAGCGCACGATATTCGTACTCTTCCGAAAATGGAAAACTCCGGCTGCCTGGACCTAGAGACGCTGGAGAACGACAACGGAGAATGCAAGCAGGACCAGCTGCGGATCCGCCACTACATGGACCACTTTGAGCGGCTGTGTCGGCTCTGCTTGGCCACGGAACGGCTCGTAAATGTCTACTCGATTGTTCAGGGACGGAACGTTTTCTACGTGCGGAACTTTGTCAAGGAGGGCTTCCGGCTGCTGGAGCAGAAGATTGACAAAAAAGATCATCTTCCGAATTTTATCTGCGAAAAGTGTGAacgaaatttaaacattttgtgcaattttaagaaaaagtgtGACGCCTCCAGGCGGGTTCTGGAAAAGGTTCGCGACAAGACGATCGTGCCGGATGATTTGCGGGAAGTGGAGATGCTTGGGTCAGCGCCACCCGCTGCAACAACGAATGAGCAGGGCATTTCTGGCCGACTGAGGAGGTCAAAGAAAATGCCCCAGCTGCAGAACAGTGGAGAGGTTCTAAAAAAGCTCCCCCAAACCACCAGCGTAGAAAAAGTTGACGAAACCGTTAAGCATGAAACATCAGCTCCAACACCACCGGAAGTCACTGCCCCTTCCGCTGAGACAATCGCTTCCCCGCTCAAAATCGAACCGGAAGAGATCAAAGAGGAAGTTATCGGCAGTGTTCAGGTAATATTCCCAGCTGACGATGCCGAGCAGGTGGCTTTAGTCCCGGAAGAGGCAGCCGACGATGCAAGCGAACCCGAACACGAGTCGGAGGAATATCTGGAGGAGCATGAAGACCAGTCCGACAGCGATTACCAACCGGATGATCCACAGGAAGAGGGTCAGCCTAGAAAGAGCGGTAGAAGGGGAAGAAGAGCCAAGTCGTCCGGTTCGTCAAGGTGTGACAAAAAGTCCAAGGAGAAGACGGTTTGCGCCATCTGCGGGGCGCTGGTCAACAACGTCAAGTGCCATATGGTCATCCACGAGGAGGTGCGGCCGCATCAGTGCGAGCACTGCCCGAAGAACTTTACCTCGAGGAATAAGttGCAATCACACATCAACAGTGTCCACCTGAAAAAGCGCGACTTCAAGTGCGAAATATGTGGGAAGGCGTTCCTCGAAAAGAACAACCTTAAGGGCCATCTTCGGATCCACAACGGCGACCGCAAGTACCAGTGTGACCTTTGTCCGAAAAGCTTCCTCTTTGCGGGAACGCTCCGTTGTCACAAGTTGACCCACACCCAGGACAAGCAGCACGAGTGCCACGTCTGTGGCAAGCGGTTCCTCATGCGGACCACCCTGAACAAACACCTGTACGTGCACAGTAACGAACGGCCCCACAAATGTGAACTGTGCGAGAAGGCGTTCCGGACTTCGACGCACAAAATCATCCACATGCGAACGCACACCGGAGAGAAACCGCTGCAGTGCCGGATCTGCCTGACCGGGTTTGCCCACCACAAGGCGCGAAGTGTCCACATGAAGACCAAACACGCCGAAGAGCTGCTGGCGTTGGACTTGCTGGACGAGAAGGGACATCTCAAGTTTTGA
Protein Sequence: MSHLPESFDAMQKRIAFVQQHFGLQLCRFCGTETRGLLRIFTEDRQTFNAERNIDQLLEKQFVQFVPENEAGLPNFICEKCVDSLVRWNRFQETFSATTKLLLKVREQLVVDVGAIKVDPALASEEDDDDVSYEEFEEESQEKVYPEDHDVYEIEYVHNLPDNVTVEDVTIIETIDEEFDLPLREEILIETKEESNESEQFIGFDEKEEEKHVIELQTRSRKRKRRLSRDSEEPAPKSTTPQQCPICGVLVKVKMKHHLLRHSDPEGRPFKCTQCDKSYSIKKTLADHIRQVHQNIRYACDVCQKQFVSRDVLRVHKKLHSNEQHRCQHCGQTFLQRVYLLKHMAVHEQKRFTCEDCGKTFRFKELMKQHARIHTGEKPFPCGSCDKSFRTSTHLKQHMRSHTQAKVFKCKLCPVAYANKKSLDRHVARGQHQVEVKHKGISRLVVEVRRGIMVGQQRFRLSEVPLLNRDHVKIRDPDKVEHMLNELVAGGTEKLQVVTDFDYTITKQRLTNGEKILTSFGMFNECRSLPVSVLEESKKLFHKYRPIEIDPHMPMEDKVRYMIEWWTKTGDLLKGFPLPQEEIAEVAKRFKDGLRDGTPQMFYDLDQLGVPCLVFSAGLGDSVISVLRQANVMYPNVKVISNFLQYNPDGTLNGLQDKMIHTFNKNETALKGTDYYDLVHDRDHVIVMGDSLGDAGMADGIPSSSHVLKIGFLFDHPEQNLPRYMDTFDIVLIDDQTMDVPRTIVEMVKNKSHNHFRSVARPRKSRKILLSGEKVFKQIFSAEKMERPKREDFDKICRLCLKSASLVNIFDRNPKTQQESLSTLVRETVEMLGLTIDPDDNFPRKMCLPCKDSLRSLYKFRNQCQEANDLILEVLSSFELTVAQEVPSKLTVSVPESQPKLSEEFISVKATSTLIKEDIPAIDDHDEPVELSEQMVLEADSSSALNVSIVKSEAPSTVTVSEEYEYLEQESEPDDGERDGKVEEMEANAGQDVYTIEMQADEAEEEREDGGGDVQNFEVYLEENSGSDEEEEAKSEDQSEQLQVATVKRGSVKGQLCTICNKYSTCLKYHMMYHTGERPYSCPHCEKSFRTSTKLKIHVDGVHLKLRKFTCEVCNKKFLDAGNLKSHMATHAETRKYVCDYENCGKAFALPGTLRVHKLTHTQDKQFECSFCHKSFLYKWLLVKHERSHTGEKPYECEVCHKRFSTSTHAKTHQKIHDPFREKPAKTPRKKKRQAGEESDDAVEVVVSIDPSGPYPRKICQVCKDFLRALHKFRQQAQEANDLVMEACPGGDLQMQLALPVPVRSPPLVLPRPQIPSPSAAVVVKNERTNVSQKSPSPRATRRTSQDKPYKLARAVQPVRKTYSCHLCDFKGFSPKALSAHLSKEHPSRYTCDICGQQFMHGSGLLMHKYEAHDIRTLPKMENSGCLDLETLENDNGECKQDQLRIRHYMDHFERLCRLCLATERLVNVYSIVQGRNVFYVRNFVKEGFRLLEQKIDKKDHLPNFICEKCERNLNILCNFKKKCDASRRVLEKVRDKTIVPDDLREVEMLGSAPPAATTNEQGISGRLRRSKKMPQLQNSGEVLKKLPQTTSVEKVDETVKHETSAPTPPEVTAPSAETIASPLKIEPEEIKEEVIGSVQVIFPADDAEQVALVPEEAADDASEPEHESEEYLEEHEDQSDSDYQPDDPQEEGQPRKSGRRGRRAKSSGSSRCDKKSKEKTVCAICGALVNNVKCHMVIHEEVRPHQCEHCPKNFTSRNKLQSHINSVHLKKRDFKCEICGKAFLEKNNLKGHLRIHNGDRKYQCDLCPKSFLFAGTLRCHKLTHTQDKQHECHVCGKRFLMRTTLNKHLYVHSNERPHKCELCEKAFRTSTHKIIHMRTHTGEKPLQCRICLTGFAHHKARSVHMKTKHAEELLALDLLDEKGHLKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -