Cqui005907.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_015732765.1
- Location
- NC:88170495-88174134[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.3e-06 0.00021 21.3 1.6 1 23 191 213 191 213 0.97 2 13 0.0058 0.17 12.2 5.5 1 23 220 242 220 242 0.98 3 13 5.8e-07 1.6e-05 24.8 1.1 1 23 248 271 248 271 0.98 4 13 5.9e-06 0.00017 21.6 0.5 1 23 277 300 277 300 0.97 5 13 0.00015 0.0044 17.1 4.0 1 23 308 330 308 330 0.99 6 13 0.0085 0.24 11.7 0.7 2 23 337 359 336 359 0.93 7 13 0.0099 0.28 11.5 0.4 2 23 368 390 367 390 0.94 8 13 9.5e-06 0.00027 20.9 1.1 1 23 635 657 635 657 0.98 9 13 0.00055 0.016 15.4 6.1 1 23 664 686 664 686 0.98 10 13 5.4e-05 0.0015 18.6 0.5 1 23 692 715 692 715 0.98 11 13 2.1e-05 0.0006 19.9 1.8 1 23 721 744 721 744 0.95 12 13 1.8e-05 0.0005 20.1 2.5 1 23 752 774 752 774 0.98 13 13 0.0027 0.077 13.2 0.3 2 20 781 799 780 801 0.95
Sequence Information
- Coding Sequence
- ATGTCCTCTTTCGGCGAGTCTCACGTCCTGTGCCGTGTTTGTGCCAAGCCGTTCGAAAGCAGCACCATGTTTCGACTGTTGGACGAATTAGCTGACGCCTTCTGGCGAGTGTCAGAAATCGAGATCCTGGCGCAAGATTCCGGATTTCCACAAAGTTGCTGCCTAATGTGTCGGGACCGGTTGCAGGAGGTGGGGGAATTGAGGGCGCTGTGCTTGGATTCTGACCGAAAGCTGCGTAAAATGATTGGGATTGGCTTGAGGGAGGAGGAAGAGGGCGATGGTATCGGCATGGATAGTATAGATGCGATTCCCAAGGTGGAGATGCAAGAGGTTCCCGAATCTTATTCATGCTGGGAAGACATGGAGAACAGATTTGAATCCAGCGAAGAAGATAACGACAAGGGAAATCATTTGGACTCAGTGCCAGACGTTGTGAAACAGACCCCCGGAAAGACCACTAAGGAAAATGCTGAATCTAAGGTTAAACGAAAACCTAAAGCTACGAAATCTGGATCGGATAAACCACCACCAAAAACAAAGGGACCAAAAACTCCGAAGGATCCGAAATCTTTCCAATGCACGATGTGCGGTAAAATCTACAAAACCAGCTACAATCTTAAAGAGCACGAAACGAGTCACAATTCAGACCAAAAGAACCACAAATGTCACATTTGCTTGCGAGATTTTGCACGACGGAAATACTTCTTGGAGCACCTCCGGATGCACGAAACGGAGAACCAATTCAAATGCAACGAGTGTGACAAAGCGTACAGTACTAATAGGCTGCTGCAGCAGCACATCCGAGTCAAGCACAGTGGCGAGCGTCCCTTCCAGTGCAGCATCTGTCCGAAAAACTTTGCACGTGCTTCTTCTCTTCATGTGCACGTTCAGTCAGTCCATAAAAAGATACGGAAAAAGACGTACAGATGTGATAAATGTACGCGATGTTTTGAAGGCAAAACCGCCTTCGAGCGGCATATGAACAGCCACGAAGGAATCAAGCTGAACCAGTGTCCCCATTGTGGTAACAAGTACGAGTTTAAGGCGTACCTGCTGCAGCACATTGCCGAGAAACATCCGGAAACGGTGGAGAATCTCACTACGTGTCAGTATTGCGGTGTGGGATACAGCACGGATGGATACTACCGGAAACACATCGTCAAGAGACATCCGGAGCATTTGGAAGTATTTGATCAGTGGATGAAGGCAAAACGTGAGGAAGCTTCAACTTCAACGTCTCCGACAATGACCTCCATCAGTGGGTTTCATTTCCTGTGCCGTGTTTGTGCCAAACCTTTCGAGAGCAGCGCCATGGTCCGGATGTTTAACGAGCGGAATAAGCCCCTCCCCCTAGCGGAAGCCTTCTGGCGTGTGTCGGAAATCGATATCCATGCGGAAAATTCCAGATTTCCACAAAGTTGCTGCGCTAGGTGCCAGGACCGGTTGCAGGAGGTTGTGGATTTGAGGGCGCTCTGTCTGGAATCGGATAGGAAATTACGCAAAATGATTGGCATTAGCTTAAAAGAGGAGGAAGAGGGCGAGGATATCGGGATGAGTAACGTAACTGCTGTTCCCAAGGTCGAGGTGCAAGAAGTTCCCGAATCGTATTCATGCTGGGAAGACAGGGAAAACAGATTCAATTCCAGCGAAGAGGAAAGTGATACGGAAAAATCTCCGAAGAAAGCCAGGAAACCACGAACTAAAGAACTAAGGCTCGGAGAGAGGACGGATGATGCAGCCAAAAAAGGAGCATTTCCTGCTTCGGACTTTGAACCAAACGCTACAGAAAAGAAATCTAAAGGTAAAACCAAGACCAAACCTAAGACGAAACGACAATCTAAAACTTTAGAAGAAGGAAACGCGTCAAACTCAAAGGAAAAGACTGCCAAAGGACCACAGTCTTACCAGTGTACTTTGTGCggtaaaatttataaatccaGCAACAATCTGAGGGAACACGAAACAACTCACTTCCCGGACAGAAAGAACCACAAATGTCACATCTGCTCGCAAGAGTTCGCCCGGCGAAACTACTACCTTCGACACATGAAAATGCACCAAACGGAGAACCAATTCAAATGCAACGAGTGTGACAAAATCTACCCGTCGGATAAGAAGCTACAGGAGCACATCCGCATCACACACCGTGGCGAGCGTCCATTCCAGTGCAACATTTGCTCGAAAACATTCCCGCGATCATTTACGCTAAACCATCACGTGCAGGCAGTCCACGAGAAGATCAGGAAAAAGACGTTCAGATGTGAGAAATGTACGCGGACGTTTGAAAGCAAAACCGCCTACGAACGGCATATGAACAGCCATGAAGGAATTAAGCTGAACCAATGTTCGCATTGTGGTAAAAACTACGAATTCAAAGCGTATCTGTTGCAGCACATAGCCGAGAAAATCCGGAAACGGTGGAGAATCTCAGCCGGTGTCAGTTTTGTGGGGTTGGGTACAGTACGGATGGATACTACCGAAAGCATATCGTCAAAAGGCATCTGGAGCACTTGGAAGCATTTGATAAGTGGATGA
- Protein Sequence
- MSSFGESHVLCRVCAKPFESSTMFRLLDELADAFWRVSEIEILAQDSGFPQSCCLMCRDRLQEVGELRALCLDSDRKLRKMIGIGLREEEEGDGIGMDSIDAIPKVEMQEVPESYSCWEDMENRFESSEEDNDKGNHLDSVPDVVKQTPGKTTKENAESKVKRKPKATKSGSDKPPPKTKGPKTPKDPKSFQCTMCGKIYKTSYNLKEHETSHNSDQKNHKCHICLRDFARRKYFLEHLRMHETENQFKCNECDKAYSTNRLLQQHIRVKHSGERPFQCSICPKNFARASSLHVHVQSVHKKIRKKTYRCDKCTRCFEGKTAFERHMNSHEGIKLNQCPHCGNKYEFKAYLLQHIAEKHPETVENLTTCQYCGVGYSTDGYYRKHIVKRHPEHLEVFDQWMKAKREEASTSTSPTMTSISGFHFLCRVCAKPFESSAMVRMFNERNKPLPLAEAFWRVSEIDIHAENSRFPQSCCARCQDRLQEVVDLRALCLESDRKLRKMIGISLKEEEEGEDIGMSNVTAVPKVEVQEVPESYSCWEDRENRFNSSEEESDTEKSPKKARKPRTKELRLGERTDDAAKKGAFPASDFEPNATEKKSKGKTKTKPKTKRQSKTLEEGNASNSKEKTAKGPQSYQCTLCGKIYKSSNNLREHETTHFPDRKNHKCHICSQEFARRNYYLRHMKMHQTENQFKCNECDKIYPSDKKLQEHIRITHRGERPFQCNICSKTFPRSFTLNHHVQAVHEKIRKKTFRCEKCTRTFESKTAYERHMNSHEGIKLNQCSHCGKNYEFKAYLLQHIAEKIRKRWRISAGVSFVGLGTVRMDTTESISSKGIWSTWKHLISG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -