Cqui002030.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:76284524-76314363[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.3 8.5 6.8 0.2 1 23 147 170 147 170 0.89 2 34 0.31 8.7 6.8 0.4 6 23 179 196 179 196 0.95 3 34 0.0017 0.049 13.8 0.7 2 23 203 225 202 225 0.96 4 34 0.00025 0.0073 16.5 2.2 2 23 234 255 233 255 0.96 5 34 0.021 0.61 10.4 1.4 2 23 264 286 263 286 0.93 6 34 0.0062 0.18 12.1 1.0 2 23 335 357 334 357 0.94 7 34 0.39 11 6.4 0.1 6 23 366 383 366 383 0.98 8 34 0.033 0.94 9.8 0.8 2 23 390 412 389 412 0.93 9 34 0.00028 0.0079 16.3 5.7 1 23 420 442 420 442 0.98 10 34 1.6 45 4.5 0.5 2 23 451 473 450 473 0.92 11 34 3.1 88 3.6 2.0 1 23 479 501 479 501 0.95 12 34 0.14 4 7.8 2.4 2 23 542 563 541 563 0.96 13 34 0.0004 0.011 15.8 0.5 3 23 570 590 568 590 0.98 14 34 0.00071 0.02 15.1 2.0 1 23 596 619 596 619 0.97 15 34 0.11 3.3 8.1 0.2 2 23 819 841 818 841 0.91 16 34 2.3 65 4.0 0.3 6 23 850 867 850 867 0.97 17 34 8e-06 0.00023 21.2 0.7 1 23 873 896 873 896 0.97 18 34 0.0011 0.032 14.4 1.1 2 23 905 926 904 926 0.96 19 34 0.84 24 5.4 2.0 1 21 934 954 934 957 0.87 20 34 0.11 3.1 8.2 1.8 1 23 964 986 964 986 0.97 21 34 3.1 87 3.6 0.4 2 23 1002 1022 1001 1022 0.80 22 34 0.27 7.6 7.0 1.4 2 23 1027 1048 1026 1048 0.94 23 34 0.00017 0.0048 17.0 0.6 2 23 1054 1075 1053 1075 0.96 24 34 0.00071 0.02 15.1 2.0 1 23 1081 1104 1081 1104 0.97 25 34 0.00039 0.011 15.9 1.1 1 23 1377 1400 1377 1400 0.94 26 34 0.73 21 5.6 1.4 1 23 1454 1477 1454 1477 0.89 27 34 3.8 1.1e+02 3.3 4.2 1 23 1509 1532 1509 1532 0.97 28 34 0.0002 0.0056 16.8 1.9 1 23 1540 1562 1540 1562 0.97 29 34 0.0003 0.0085 16.2 1.1 2 23 1571 1593 1570 1593 0.97 30 34 0.0027 0.076 13.3 0.4 1 23 1598 1620 1598 1620 0.96 31 34 0.096 2.7 8.4 2.9 2 23 1629 1650 1628 1650 0.97 32 34 0.0084 0.24 11.7 0.5 2 23 1657 1679 1656 1679 0.95 33 34 0.00012 0.0034 17.5 1.1 2 23 1685 1707 1684 1707 0.92 34 34 0.0027 0.078 13.2 3.8 1 23 1713 1736 1713 1736 0.96
Sequence Information
- Coding Sequence
- ATGACGGAACCTGCTTGTCTAACCTGCACTAAGCAAGTTCCGGGCCTGGACCAGGCCGTTTCCGTGGGAAACCGGCAGGAAGTGCAGACTGCTCTCTCGAAGCACTTTTGGTTTAGTGAGTTCGAATATCGGGACAGTTTGCTTTGCCAGTGCTGCTGGGGACAGATTCATGAATTTAATCGTTTCTACTGTGAGATTGAGCAAATTCACACGGACAAGAAGCACGACACTTTGAGTAACTTTGTAGAGATTAAACAAGAACCGCAGGTTGAGGATGAGGATGATTTCTTCAAGAAGGAACCGGAGGAGGTCGAACACTTTGAAGATGAAAGTAACGGTTTGGAGCAGGATTCTGAAACTGAACAAGATTCTTCCGGAGAGGAGGACACTCGTTCCATCACGCAAGCCGTGGCCGAGTTTATCAgtgaaaacatcaaattcgattgTGCAACCTGCGCAAAGCCATACGAAACATTCGAGGAGCTTCGGCGCCACTCGCTGGGGCAGCACGGGAAGCGAGCTTATGCATTTTGCTGTGGGAACCGGTACTCGCAAAAGTCCAAACTGACCGCCCACGTGCTGTTCCACGTGAGTCCCGACCGGCTGCAGTGCGATGTTTGTTCAAAGCAGTTTAGAACGCGCCGAGCGTGGAAAAGCCACCGGGCGACGGCCCATGCCACCGAGGAGGAAAAGGTTCTGCAGTGTTCCGTTTGTCCGAAGAAGTTTGCCCAGCAGCAGCATCTGAAGCTGCACGAAAAGTACCACCGGAAGCTGGAGGAACGCAAGTGGCACTGCACGAGCTGTGACAAGTATTTTCCGTACGAATCTACGCTGCGGCAGCACAACCGGGGCATTCACGCGTTGGAGGAGCCGGCGAAGGTTGGGAATGTAAAGTTGGAGGCGGTTCTTGAAGAAGCGCATGATGACAAATCTGAAGATTATCAGGCAAAGCTAAAGAAAAGCAAGATAGATAACGAGCTAATTGCACAGCACATCAGCCTAGAGTGCGATACTTGCTCCAAAAAGTTCGAGTCGTTCGACATGTTGCAGAAACATTCGACGACGGTGCACTTTAAGCGTGCCACAGTTTTCTGCTGCGATACCAACTATTCCCAAAAGCCAAGCCTCGTTGACCACATCCGCTTCCACGTCGATCCTGGCCAGCTGCAGTGCGAAATTTGCTCCAAGCAGTTCCGGCAACTGCGAGCTCTCAAATTTCACCGAGATACCGCTCATGCCAGCGAAGACGACGCGGTTCATCAGTGCTCGATGTGTCCGAAGAAATTCGTTACCGAAAAACACCTAAAAATCCACCAAAAGTACCACCTGAGAATGAACGAGCGCAAGTGGCACTGCGTGGAGTGCGATCGCTACTTTGCGTACGAATCAATACTGCGACAGCACAACCAATCCGTTCACACCAAGACTTCCCTGTACATTTGCCACATTTGCGCCAAAGAGTACCATATCTACACGTCGTACTCGACGCACATGGCCGCGCACGACGAGAGCGGACAGGCCAAGAACAAACCCCCCGAAGAGAAGCTCCAATGTCTAGAGTGCAAAGCCTGGGTCACCAAGCGGGGCTTCCGGCGGCACATCCTGCGCCACACGGGCACCCAAACGTGCGACCAGTGCGGCCACGAGTGCCGAAGCGCGATGGCCCTGCGGTACCACCAGGCCCAGCACCGCAGCGGCGACTTTGGCTGCACGGTGTGCGACAAGACGTTCAAGGCGCAGCTCACGCTCAAGGAGCACATGGCGACGCACACCGGAGACGTACTGTACTCTTGTGATTTCTGCGACAAAACGTTCAACTCGAACGCGAACCGAGCGTCGCACCGGAAGAAGATGCACCCCCGCGAGTGGCTCGAGGATAAGATGCGGAAAAGGGGCGAAggagcggcggcggcggctgcgACGGAAGTGACGAACGTGCTGCAGGGCGAATCCGAAAGTCTGTACGGCATTCTGTGCCCCGTTTGCTGGACCAAAATCCACGACTTCCATCAATTCTACACCGAGGTGGAGAGCATCCACGCCAAACATCCGCAACTGCCCCTGCAGCTACAGCCCGATCAGTTTCTGGAGGTGAAGCAGGAGGAGCCACTGCAGGCGACGGTCTTTGTCGCCGAAGATGTCGTCGTGAAGAGCGAGGGTGACGAGTCGAATGAGGGTTCGAAAGCGGAAAGCGACGGAGATGATTTCGGAGGGGGAGGGGACAGTCCGATGTTGAAGGAGGAAGATTCTGAGGATGATGATGAGCTGAATGAAAGTTCCCAAGAGGATGATTCGGAGTATGAGGAAGAACCGGTGCGGAAAAGGGGAAGAAAACCTGGTTCGGGtaagaagaaggaaaaaaagaaaaccggGAAGCGAAGGGTAGGTCGACCGGTTCAAGGATGGCAGAAGGACATTCAGGATGAGAGCTTCATTGCGGAAACGGTCAATCTGGTATGTGACACTTGCAGCGAAAAGTTTGGAACGTTCGAAGATCTGCAGCAGCACTCAACGGTGTTGCACGATAAGCTGGCGTATATTTTCTGCTGTAATCTCAAGTTTTCTCGCAAGCCACGGCTCGTCGATCATATCCAGTTCCACCTCAACCCGTCCCAGTTTGCTTGCAAGATCTGTTCGAAGCAGTTTGGCGATCGGGAAGCGCTCAAGAGGCACATGCGATCGATGCACGTGGACGAGGAGGAAAAGACGTTGCAGTGTAGCGTGTGTCCAAAGAGGTTCGCGCAGAAGCGATTCCTGAACCTGCACGAAAAGTACCACCGCAATCTGCAGGAAAAGAAGTTCCACTGCGAACCGTGCAATCGCTACTTTGCGTACGCTTCTCTGCTCCGACACCACAACGAGGAAGTGCACGAGAATAAACCGGACAAGTACGTGTGTCACATCTGCGCCAAGAGCTACAACATTTACACGTCGTACAAGTCGCACGTTGACTCCCACGACGAGGAAGCCAAGAAGGTCAAACAGTTGTCGATGGAGCGGGTTCAGTGTACGGATTGTAACGCTTGGGTTTATCAGCGAGGTCTGCGCAAGCACATGCTCCGTCACTCTGGAACTCAACGGTGCGACATCTGCGGGCAGGAATGTTCGAGCGTTATGACTCTGAAATATCACAAGGCTCAGCATCGCAAAGACGATCTGACTTGCTCGGTGTGCGAGAAGGTGTTTAAGCGAATGATCAATTTTAAGGAGCACATGGCATCGCACACCGGAGACGTACTGTACTCTTGTGATTTCTGCGACAAAACGTTCAACTCGAATGCGAATCGAGCCTCGCATCGGAAAAAGATGCACCCGAAGGAGTGGCTCGAGGACAAGATGAGGAAAAATCCGAACCTGATGCAGGAGCAGTTTCAGCAGCCGCAGCAGCAACAGCCATTTATTATCCCTAATTGTTTGCCCTCCCAGCCAATTAGAACCATACCAGATCCCGGCACAATGGACCGCACCGCTTGTTTGACCTGCTTGCAGCAACCGGACGACGAAACAGATCAGCAAAACATCTGCCACTCGGATTTGCGTGAAATCGTGCGAAAACACTTTTGGTTCTCGGATGCGGAGCTAGCTCAGGCTTGGATATGCGAGGTCTGCTGGGAAACCATCAGCGTGTTTCATCAGTTCTACGTGGATGTCGAGCAGCTGTATGAAACGAAGCCGGTTCCGGAACTGGAAGCGGTGACCGTCAAGGAGGAGAAGGACATTACCCAGGTTATGCTGGTTGAAAACGAAATTAAAGAGGAAGTACTCTCGGACGATATGCAGGAAGAGTTTGAAGACGAACAGCTCTACACGGTGGAACTGAAAGAAGGTGAGGAGCAGGAAAGTGAAAGTGATTCCAATTCTGATTCCGATGATTCGATGAGCGGTGAGAATGAAGCCGACTCTGAGTCAAACCTCGGTGAAAACCATCCGGACAACATTATCCGACGGCATGTTGAGCTGACCTGCCAAGAGTGCGACGATGCTGGAAGTTTTACGTTCAAAGAGTTCACCATTCATGCCGAAAAGATTCACGGAAACAAGAAACCGTTCGTGATGTGCTGCGGATCCAAGTACATCAAGCGGTGCTATCTACTGGAGCACGTACGCTACGTTCTCAATCCGGATGCATTCCTGTGCAAGCACTGTGACGAGGCATTTACCAGTGGAGTTGCCCTCAAACGGCACCTTAAAATTCGTCACGGTAAAGGGCAAACCCGTCGATACAATAACGAAAATCGGCTGCGAAAGGACAAATCAGTTCCGGTTAAAAATGAAGAGCAGCTAAAGAAGCGCGAAGAGATTGAGCTCAAACGACAGCAGCGAGCGGCCGACGATCAGATCATGCTTGGCCACGTAAAGTTCGAGTGTGTTCCCTGTGGTGAGTCATTCATCTCCTTCACGCAACTGCACACCCACAGCACGTCCAAGCACAAGATCAAACCGGTGGTCACGTGCTGCGGGAATCGATACAACAGCCGATGTAAGCTGTGGCAGCACGTCACGTCGGTTCTCAATCCGGTCGCCTATCGGTGCGAGCTCTGTATGCGATGCTTTAACAGTGAGTACGCCAAGGATACCCATCGGCGGAAAATGCATCCGACCGCGGAGGAGCTCAAGTACCACTGTGAGCGGTGCGACAAGCCGTTCTCGAGGGAAATTGCTTACAAGCGACACATGCAGGACCACGAGGACTCGGATCATGGGCGGATCAAGTGTGAGGAGTGTGGCAAGATGTTCAAAAGTCGCACGGTTCTGTACATGCACGTGCGCAAAAAGCACGTGGCGCCCCAGTTTGTGTGCGACATTTGCGCGAAGGCGTTCCACCAACCGGCGGAGTTCGAGAAGCACAAGCTGGAGCACGAGGATCCGGACAAACTGCGGATGCAGTGCCAGCACTGCCTAAAGTGGTTCAAAAACCGCGAGTACTGGCGCACGCACATCCGGCTGCACAATCCGACGACGCCGGTTCCGTGCGAACTGTGCGATCGCGTTTGCCAGAATAAGCGGGCGTGGCGGGCACACATGAAAAATGCTCACGGTACGCCCGACAAGGTGTGTGAGCTGTGCGGCAAGTGTTTCAAGAAGAAGCAAAGTCTGCAGGAGCACATTGCTGCGGTCCACACGGGACAGAAGCTGTTTAGTTGTCCCTTTTGTCCGCGGAACTTTAACTCGAGCTCGAACATGCATACTCAcaagaaaaatatgcacaccGAGGAATGGCAAGCGTCGAAACTGGGCGCGGTCGCGACTACATCCTTTGCTGGTCCGAGTGAGACAGATATGACGAAGGATGGAGCGTTTTTGCAGTGA
- Protein Sequence
- MTEPACLTCTKQVPGLDQAVSVGNRQEVQTALSKHFWFSEFEYRDSLLCQCCWGQIHEFNRFYCEIEQIHTDKKHDTLSNFVEIKQEPQVEDEDDFFKKEPEEVEHFEDESNGLEQDSETEQDSSGEEDTRSITQAVAEFISENIKFDCATCAKPYETFEELRRHSLGQHGKRAYAFCCGNRYSQKSKLTAHVLFHVSPDRLQCDVCSKQFRTRRAWKSHRATAHATEEEKVLQCSVCPKKFAQQQHLKLHEKYHRKLEERKWHCTSCDKYFPYESTLRQHNRGIHALEEPAKVGNVKLEAVLEEAHDDKSEDYQAKLKKSKIDNELIAQHISLECDTCSKKFESFDMLQKHSTTVHFKRATVFCCDTNYSQKPSLVDHIRFHVDPGQLQCEICSKQFRQLRALKFHRDTAHASEDDAVHQCSMCPKKFVTEKHLKIHQKYHLRMNERKWHCVECDRYFAYESILRQHNQSVHTKTSLYICHICAKEYHIYTSYSTHMAAHDESGQAKNKPPEEKLQCLECKAWVTKRGFRRHILRHTGTQTCDQCGHECRSAMALRYHQAQHRSGDFGCTVCDKTFKAQLTLKEHMATHTGDVLYSCDFCDKTFNSNANRASHRKKMHPREWLEDKMRKRGEGAAAAAATEVTNVLQGESESLYGILCPVCWTKIHDFHQFYTEVESIHAKHPQLPLQLQPDQFLEVKQEEPLQATVFVAEDVVVKSEGDESNEGSKAESDGDDFGGGGDSPMLKEEDSEDDDELNESSQEDDSEYEEEPVRKRGRKPGSGKKKEKKKTGKRRVGRPVQGWQKDIQDESFIAETVNLVCDTCSEKFGTFEDLQQHSTVLHDKLAYIFCCNLKFSRKPRLVDHIQFHLNPSQFACKICSKQFGDREALKRHMRSMHVDEEEKTLQCSVCPKRFAQKRFLNLHEKYHRNLQEKKFHCEPCNRYFAYASLLRHHNEEVHENKPDKYVCHICAKSYNIYTSYKSHVDSHDEEAKKVKQLSMERVQCTDCNAWVYQRGLRKHMLRHSGTQRCDICGQECSSVMTLKYHKAQHRKDDLTCSVCEKVFKRMINFKEHMASHTGDVLYSCDFCDKTFNSNANRASHRKKMHPKEWLEDKMRKNPNLMQEQFQQPQQQQPFIIPNCLPSQPIRTIPDPGTMDRTACLTCLQQPDDETDQQNICHSDLREIVRKHFWFSDAELAQAWICEVCWETISVFHQFYVDVEQLYETKPVPELEAVTVKEEKDITQVMLVENEIKEEVLSDDMQEEFEDEQLYTVELKEGEEQESESDSNSDSDDSMSGENEADSESNLGENHPDNIIRRHVELTCQECDDAGSFTFKEFTIHAEKIHGNKKPFVMCCGSKYIKRCYLLEHVRYVLNPDAFLCKHCDEAFTSGVALKRHLKIRHGKGQTRRYNNENRLRKDKSVPVKNEEQLKKREEIELKRQQRAADDQIMLGHVKFECVPCGESFISFTQLHTHSTSKHKIKPVVTCCGNRYNSRCKLWQHVTSVLNPVAYRCELCMRCFNSEYAKDTHRRKMHPTAEELKYHCERCDKPFSREIAYKRHMQDHEDSDHGRIKCEECGKMFKSRTVLYMHVRKKHVAPQFVCDICAKAFHQPAEFEKHKLEHEDPDKLRMQCQHCLKWFKNREYWRTHIRLHNPTTPVPCELCDRVCQNKRAWRAHMKNAHGTPDKVCELCGKCFKKKQSLQEHIAAVHTGQKLFSCPFCPRNFNSSSNMHTHKKNMHTEEWQASKLGAVATTSFAGPSETDMTKDGAFLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -