Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:3060300-3064173[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 6.6e-06 0.00019 21.4 0.8 2 21 158 177 158 178 0.95

2 21 0.0017 0.049 13.8 0.8 2 23 191 212 191 212 0.97

3 21 0.0023 0.066 13.4 0.3 2 20 284 302 283 304 0.92

4 21 0.0025 0.071 13.3 0.7 1 23 313 335 313 335 0.97

5 21 0.0011 0.03 14.5 2.2 3 22 341 360 339 360 0.93

6 21 0.00052 0.015 15.5 0.3 2 21 385 404 384 405 0.93

7 21 0.00084 0.024 14.8 1.6 2 23 418 439 418 439 0.97

8 21 0.005 0.14 12.4 0.4 2 20 503 521 502 523 0.93

9 21 0.0037 0.11 12.8 1.8 1 23 532 554 532 554 0.97

10 21 0.0057 0.16 12.2 2.5 3 21 560 578 559 579 0.94

11 21 0.44 12 6.3 0.5 2 21 611 630 610 631 0.87

12 21 0.00049 0.014 15.6 1.5 1 23 640 662 640 662 0.97

13 21 0.056 1.6 9.1 0.0 3 21 668 686 667 687 0.95

14 21 0.0014 0.041 14.1 0.9 1 23 740 762 740 762 0.98

15 21 0.0066 0.19 12.0 0.1 2 21 767 786 766 787 0.92

16 21 0.087 2.5 8.5 0.1 2 21 809 828 808 829 0.94

17 21 0.0045 0.13 12.5 2.2 1 23 838 860 838 860 0.98

18 21 0.00066 0.019 15.2 2.3 3 22 866 885 864 885 0.94

19 21 0.74 21 5.6 0.1 2 20 911 929 910 931 0.90

20 21 0.00015 0.0042 17.2 1.7 1 23 940 962 940 962 0.98

21 21 0.0011 0.032 14.5 0.2 2 22 967 987 966 987 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	6.6e-06	0.00019	21.4	0.8	2	21	158	177	158	178	0.95
2	21	0.0017	0.049	13.8	0.8	2	23	191	212	191	212	0.97
3	21	0.0023	0.066	13.4	0.3	2	20	284	302	283	304	0.92
4	21	0.0025	0.071	13.3	0.7	1	23	313	335	313	335	0.97
5	21	0.0011	0.03	14.5	2.2	3	22	341	360	339	360	0.93
6	21	0.00052	0.015	15.5	0.3	2	21	385	404	384	405	0.93
7	21	0.00084	0.024	14.8	1.6	2	23	418	439	418	439	0.97
8	21	0.005	0.14	12.4	0.4	2	20	503	521	502	523	0.93
9	21	0.0037	0.11	12.8	1.8	1	23	532	554	532	554	0.97
10	21	0.0057	0.16	12.2	2.5	3	21	560	578	559	579	0.94
11	21	0.44	12	6.3	0.5	2	21	611	630	610	631	0.87
12	21	0.00049	0.014	15.6	1.5	1	23	640	662	640	662	0.97
13	21	0.056	1.6	9.1	0.0	3	21	668	686	667	687	0.95
14	21	0.0014	0.041	14.1	0.9	1	23	740	762	740	762	0.98
15	21	0.0066	0.19	12.0	0.1	2	21	767	786	766	787	0.92
16	21	0.087	2.5	8.5	0.1	2	21	809	828	808	829	0.94
17	21	0.0045	0.13	12.5	2.2	1	23	838	860	838	860	0.98
18	21	0.00066	0.019	15.2	2.3	3	22	866	885	864	885	0.94
19	21	0.74	21	5.6	0.1	2	20	911	929	910	931	0.90
20	21	0.00015	0.0042	17.2	1.7	1	23	940	962	940	962	0.98
21	21	0.0011	0.032	14.5	0.2	2	22	967	987	966	987	0.94

Sequence Information

Coding Sequence: ATGCAGCTCGGTATTGTAGCGGATACAAAGGTGCTGTGCCGGGTTTGCATGGTACCCGTCGTGGAACATCCGGCGAACCTGTACGACGACGCATCCCCGTTCGGACTGCCAAGTTTGCACAACATGCTGCGGACGATTTGTGCTCCGGTATTTGCGAAACCCGAAGCAGAAGCCATCGTGCCGAACATGCCGACCATTGTTTGTCTGGTGTGTCGGAACGCAATCGTGGCGGCGTACAATCTGCACCAGCAGTGCATCGAGACCGATCGACGGCTGGGTGAGTTGGTAGCTTTGATGTGGGAACTCCAAGGTCCCGGTAGCGATGAGATTGGTGAGGTTTCCGAAGATCCTCCCAAGAGCAGTATCAAGGAGGTACCAATTTCGGAGGAAACATTGGTTGGGGGCGTCGAGAACGAAGAACAGCATCCAAAGCAAAGTGGTTTACAGTTTACAGGAAAGACTGAAGATAACACTTGTACGGACTGTGGGAAGACATTTTCAACCCGTTACACCTTGGTCAGACATAAACGAGAAGGCTGGTGTATTCTGACGACCGACCCCAAGGTGCGCACTTGTGATATCTGCAACAAAGTTTTAAAGACGGTTCAGTTGCTTAAAAGACATCGTGATATGCATGATGACATCGACAGGAAAAAGCAAGCCAAATCAGATGAAGCAGCATCGGCACATCCGGAACCTCCAGCTACAACTCAACAACACGCATCGGCAGGAGAGGAGATCCCGTTGCTGAATACCGAGCTAGTGGATGTGATAAAGGTCGAAGCACTAGACCTGATGGATGAAACCCAAAGCAATAACGAAGAAGAGGTCAACGAAGAGCGTGATTTGCAATGCACCAACTGCGGCATATCGTTCTCGTCGAACAGAGCGTACCGAGATCACAAACAAGAAGGGAATTGTGAGCGACAAGAAACGTTTCCGTGTTCAGTATGCGGGaaaatttttgacaaagaaaCAAGAATGCAGTACCACCTTCGGAATCATAAAGAGCGATTGGCTTGCTCAATGTGTGATCAAACGTTCAAGAACAGAGACTGTCTGCGGTTACATCAAAAACGTTCTAGTTGTTCGGGAATGAAGGAAAAAGCTTCGCAGAACAACATTGGAAAGCAAAACGGCAAATGGAGTACAACTTGCATGGATTGTGGCAAAGCATTTTCAACCGGGTGGTCTTTGAAAAGACATAAACAAAGTGGCAGGTGTGATCCATCGATTGATCCCACGCAGCGCACCTGCGAAATCTGCAATAAATATTTTAGGACGGCTCTATTGATGAAAAGACATCGTCAAATGCATGAGAGCACCAACGGAGCGGAGTCTAACGAATCGGCACTTCCGGGACTTCCAGCTTCAACTCATGAACACGACGCGGCAGGTGGACTCTCAGAGATGATTCCGTTGAATATCGACCAAGTGGATGTGATAAAGGTCGAAGAATTAGACCTGATGGATGACAACCTAAGTGACAACGAAGCAGATCACTTGAAATGCACCAATTGCGACATATCGTTCTCCTCGAACAGAGCGTATCGAGATCACACGTCGCAAGGAAACTGTCAGAGCAAACAACTATTTCCGTGCTACATATGTGGAAAAACTTTCGACAAACTTACAAGAATGCAGTACCACACTCGTAATCACAGGGCGCGCGTGGCTTGCCCAATGTGTGATCTAACGTTCAAGAACCGAGCATGCCTGAAGTTACATCACAAACGTAAGCGTTGTTCAGGTAACAAGACAAGCGTTCCGCAGAGTGAAGTAGATCTAGGCAAAGGGCAAGAAGAACCGTTGGTTGTTGAACGCGACATACAGTGCGCTAACTGCGGTGTGACATTTACGTCAAACAGAGCACATCACAATCACATCAAAGACGGGAACTGTCAGCTAAAGATAACTTATCCATGCAAAAAGTGTGGAAAAGTCTTTGACAAACTTACCAGACTGCAATACCATCTGTACAGTCACAAGGAGCGCGTGGCTTGCTTGAAGTGTGGTCAAACGCTCGGCAACAGTGCTGCACTGTTGAAGCATATAAGATATACCCGATGTTCAGAAAATTACGAGAGGAAAACCCAGATGCAGAAAGAAGGAATCTACACGGAAGAAGAAACGAACGACTCGTTGGCCGTTGAAAAGCCATCATCGGATGGCGATTCTGGTGCGACCCAAACGGAAAATCTCCAGCAAAAACCAAATTATCCGTGCAAAGTATGTGGTAAGATTTTCGACACATTCCCAAAAATGATGTACCACAGGCGCAACCATCAGGAGCGCGTAGTTTGCCCGCAGTGTGGTCAGTCGTTCAGAAACAGAGGCATTCTGCATGTGCATATAAAACTAAAACGATGTTTAGGCAGATTCGCGAGTGTTTCCCAGGAGCAAATGAACACGGAGGTGACCAAAGAATGTCCTGTTTGCCgtgttgcattttatactgaccGAAAGCTTGAAGCGCACATCCAAAAAGGAAATTGTCAACGCAAGCCAGTCTATCCGTGCACGATCTGTGAAAAGAAGTTTGACACGCTTACAAGAATGCGGTACCACAGACGCAATCATATACAGCGCGTCAATTGTTCAAAGTGTGGTCAAACGTTCAGAAACAAGGCTTGTCTTCGGATGCATCTGAAACGTGAAGGTTCTTGCCTGGTGAGGCCTAAGGACCCCGCTACAGAAACGTATACGGAGATGACCGAAGGACTTGACAACCAGTGTACCGTTTGCGGTGCAACATTCCTGTCTAGCCGAAAACTTGATGCGCACACCCAAGAAGGCAACTGTCACCGCAGGCCAGTTTACCCGTGTACGATCTGCGGAAAGAGCTTTGACAAGCTCTCGAGAATGCGATACCACAGGCGCAATCATAGGCAGCGCGTGAGTTGTTCGGAGTGTGGTCTATTGTTCAGAAACAAGGCATCTCTGCGGATGCATATCAAGCGTGGTTCTTGCCCTAATATGCTTGAAAACTCACCGTTGAGCGGCGATGCGTTGGACACGATCAAAGTAGAAGAGCCTGAAATTATGAAGTAG
Protein Sequence: MQLGIVADTKVLCRVCMVPVVEHPANLYDDASPFGLPSLHNMLRTICAPVFAKPEAEAIVPNMPTIVCLVCRNAIVAAYNLHQQCIETDRRLGELVALMWELQGPGSDEIGEVSEDPPKSSIKEVPISEETLVGGVENEEQHPKQSGLQFTGKTEDNTCTDCGKTFSTRYTLVRHKREGWCILTTDPKVRTCDICNKVLKTVQLLKRHRDMHDDIDRKKQAKSDEAASAHPEPPATTQQHASAGEEIPLLNTELVDVIKVEALDLMDETQSNNEEEVNEERDLQCTNCGISFSSNRAYRDHKQEGNCERQETFPCSVCGKIFDKETRMQYHLRNHKERLACSMCDQTFKNRDCLRLHQKRSSCSGMKEKASQNNIGKQNGKWSTTCMDCGKAFSTGWSLKRHKQSGRCDPSIDPTQRTCEICNKYFRTALLMKRHRQMHESTNGAESNESALPGLPASTHEHDAAGGLSEMIPLNIDQVDVIKVEELDLMDDNLSDNEADHLKCTNCDISFSSNRAYRDHTSQGNCQSKQLFPCYICGKTFDKLTRMQYHTRNHRARVACPMCDLTFKNRACLKLHHKRKRCSGNKTSVPQSEVDLGKGQEEPLVVERDIQCANCGVTFTSNRAHHNHIKDGNCQLKITYPCKKCGKVFDKLTRLQYHLYSHKERVACLKCGQTLGNSAALLKHIRYTRCSENYERKTQMQKEGIYTEEETNDSLAVEKPSSDGDSGATQTENLQQKPNYPCKVCGKIFDTFPKMMYHRRNHQERVVCPQCGQSFRNRGILHVHIKLKRCLGRFASVSQEQMNTEVTKECPVCRVAFYTDRKLEAHIQKGNCQRKPVYPCTICEKKFDTLTRMRYHRRNHIQRVNCSKCGQTFRNKACLRMHLKREGSCLVRPKDPATETYTEMTEGLDNQCTVCGATFLSSRKLDAHTQEGNCHRRPVYPCTICGKSFDKLSRMRYHRRNHRQRVSCSECGLLFRNKASLRMHIKRGSCPNMLENSPLSGDALDTIKVEEPEIMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400810;
90% Identity: iTF_00400810;
80% Identity: -