Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:70007479-70019737[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 1.4 40 4.7 3.4 3 23 268 289 266 289 0.83

2 23 0.0031 0.088 13.0 8.6 1 23 295 317 295 317 0.98

3 23 0.0098 0.28 11.5 0.9 1 23 373 395 373 395 0.98

4 23 0.00049 0.014 15.6 2.5 1 23 402 424 402 424 0.98

5 23 0.00026 0.0075 16.4 0.2 1 23 436 459 436 459 0.95

6 23 2.5e-05 0.00071 19.6 0.7 1 23 486 508 486 508 0.96

7 23 0.0004 0.011 15.8 1.2 1 23 522 544 522 544 0.98

8 23 0.0015 0.043 14.0 3.2 2 23 596 617 595 618 0.94

9 23 0.00084 0.024 14.8 6.5 1 23 624 646 624 646 0.98

10 23 0.0066 0.19 12.0 3.0 1 23 684 706 684 706 0.99

11 23 0.053 1.5 9.2 0.3 1 23 788 810 788 810 0.98

12 23 0.0011 0.031 14.5 7.7 1 23 841 863 841 864 0.94

13 23 0.0003 0.0084 16.3 5.1 1 23 870 892 870 892 0.98

14 23 0.012 0.33 11.2 0.2 2 23 960 981 959 981 0.98

15 23 0.0071 0.2 11.9 6.6 2 23 1006 1027 1005 1028 0.95

16 23 0.033 0.93 9.8 3.0 1 23 1034 1057 1034 1057 0.93

17 23 8.7e-06 0.00025 21.1 0.4 1 23 1088 1110 1088 1110 0.99

18 23 4.4e-05 0.0013 18.8 0.5 1 23 1143 1165 1143 1165 0.99

19 23 0.077 2.2 8.7 4.0 2 23 1275 1296 1274 1297 0.94

20 23 4.8e-05 0.0014 18.7 2.8 1 23 1303 1326 1303 1326 0.98

21 23 0.00027 0.0078 16.4 1.2 1 23 1342 1365 1342 1365 0.98

22 23 0.0043 0.12 12.6 2.0 1 23 1371 1393 1371 1394 0.95

23 23 0.11 3.1 8.2 2.5 1 20 1425 1444 1425 1446 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	1.4	40	4.7	3.4	3	23	268	289	266	289	0.83
2	23	0.0031	0.088	13.0	8.6	1	23	295	317	295	317	0.98
3	23	0.0098	0.28	11.5	0.9	1	23	373	395	373	395	0.98
4	23	0.00049	0.014	15.6	2.5	1	23	402	424	402	424	0.98
5	23	0.00026	0.0075	16.4	0.2	1	23	436	459	436	459	0.95
6	23	2.5e-05	0.00071	19.6	0.7	1	23	486	508	486	508	0.96
7	23	0.0004	0.011	15.8	1.2	1	23	522	544	522	544	0.98
8	23	0.0015	0.043	14.0	3.2	2	23	596	617	595	618	0.94
9	23	0.00084	0.024	14.8	6.5	1	23	624	646	624	646	0.98
10	23	0.0066	0.19	12.0	3.0	1	23	684	706	684	706	0.99
11	23	0.053	1.5	9.2	0.3	1	23	788	810	788	810	0.98
12	23	0.0011	0.031	14.5	7.7	1	23	841	863	841	864	0.94
13	23	0.0003	0.0084	16.3	5.1	1	23	870	892	870	892	0.98
14	23	0.012	0.33	11.2	0.2	2	23	960	981	959	981	0.98
15	23	0.0071	0.2	11.9	6.6	2	23	1006	1027	1005	1028	0.95
16	23	0.033	0.93	9.8	3.0	1	23	1034	1057	1034	1057	0.93
17	23	8.7e-06	0.00025	21.1	0.4	1	23	1088	1110	1088	1110	0.99
18	23	4.4e-05	0.0013	18.8	0.5	1	23	1143	1165	1143	1165	0.99
19	23	0.077	2.2	8.7	4.0	2	23	1275	1296	1274	1297	0.94
20	23	4.8e-05	0.0014	18.7	2.8	1	23	1303	1326	1303	1326	0.98
21	23	0.00027	0.0078	16.4	1.2	1	23	1342	1365	1342	1365	0.98
22	23	0.0043	0.12	12.6	2.0	1	23	1371	1393	1371	1394	0.95
23	23	0.11	3.1	8.2	2.5	1	20	1425	1444	1425	1446	0.89

Sequence Information

Coding Sequence: ATGGAGCAACCCGAAATAGCCGCCGTCGATGATGCTCCTGCCCTCCCGCCCTCGTCCAACCGGAGCAATAGCACCAGCAGCTCCGAAAGCGGAAGCAGCAGTAGCGGTTCCAGTGAGTCGAGCCAGGAAGTGAACGACGATGGGGGACAGCAGGGAGAGGAGGGTGGAACGAATGGCCGGAGCAGTTCGGCTGATTATCCGGCTGTGATGCCGCCCCCGCCACCGGCCGTCAATACGCTGTGCAGGATTTGTATGTGCGATCCGGCCGAGGATGGTCGAATGCTGGAGTCGTTGTTCCGGACGACGGTCGACTCGAAGACGCTGTACGCGATGTTGGTGACCGTAGTTCCGCTGGGGCAGGGCAACAACGACGGAATGCCGGACAAGGTGTGTACGAGCTGTAAGGGGAAGTTGGTGCAGGCGTACAGGCTGTACGAGACCTGCGTCAAGAGTGACGAACGGTTGAGGAAGTTGTTGCAGCTGCAGAACAGTGCCGGAGGAGTGCTGATTAAGCAGGAGATTATCGATGAAGACGACGAGGACGTTGAGTTGGCCAATTTTCAGCTGTACTGCGATGCGCAGGTGAAGAAGGAGGACGAATATGACCAGGATTACCTGTTTGATGGAGGGTTTTATGGGGTTGGATTGGCCGCGGCGCATTACAACACACCGAATTTGCGCATTCAGTCGGTGCACAACGGGCCGGAAGTGTTGGTGCAGCTGCAGGAAGGTCTTGATGCGCCCTCGCAGCCAGCTGTGGAGTGGGACAAGTATGTGAAGGTGACCCCAAATGGCCATCACTGCATTCTGTGTGGAAAggactttaaatactttagctACTTTAAGCAGCACGCGATCGCCCAACATGACCCGAGCAAGCCCCACAAATGCCACCAGTGCAAGTACACGTTCAAGACGGAACAGCGTCTGTTTCTACACATGCGAACCCATCTGGAACAACAAGCTGAAGAACTTCCTCTTGCCGTTGAGCACGCCGAACTGCCCGAACCGGAGCTGGAAATCGAAGGAACGCTCGATCTGGACCAGTCCGAGGATTCCATCGTTGACGACGAAAGCGTTTCCATTTCGATTAACCCGGACAATGGCGAGAAAATCTACACCTGCCTGATCTGCCAGAAGCAGCTGACCACGCTCCCTCTTTACCGGCGCCACCAAACGGTCCACACGGTCCGTGGCCGGCCATTTGAGTGTGAAATCTGCCACTACCGGTTCGCGATGAAGTTCAGCTACAACGCGCACATGCTGCGCCACGAACAGGGCAAAGACCCGGCCCAACCTGCGGCCTACAAGTGTGCCGAATGTCCGCAAACGTTCGTCCGGCGGAAGCTCCTCAATCTGCACGTCGCCGTGAACCACGAAAAACCAACCGTCTATCTCAACCGAACCGCCCCGGCAGCTATCCTGACGAGCAACATCTCCGAGGGACGCGGCGGCCACGCCTGCCCGATTTGCTCGGAAACCTTCAACCGCGAGTCGGTCCTCAACAATCACATGAAAATGCACGAACTCGAGGCGGCCCAACTCAAGCACTCGGAAGTGTGCTACATCTGCAACGTGTGCGGCGTCGAGTGCGAAACGCGCGATTCCTTCACCACCCACATCAAAACCCACGGCGACGACATTGCCCTCGAGCACCAGAACAACTCGATGGACgtggacgacgatgacgacgatccGGCCATGCCGCCGACGCCCCAAAACGGTGCCACCGATCCGCTCAGCACCAGCACACCCACCTCCAAGCCCGAACCCAAGTCCGGCGTGCGGTGCGAGCTCTGCTCCAAGACATTCCCGTATGCGTGCAACCTCAAACAGCACCGGATCATCCACCACTCGGAACTGAAGCCGCACGAATGCCACATCTGCCACTACCGGTTCGAGTACGAGGGCACCCTGATGCGCCACATGCAGAAACATTCCAAACAGGAATTGAGTGCTGCCGCGGCCGCCACCAACACCCCAACAACCATCCCGTCTCTTCCCCAACCCGAAGACCCGATCGTGGCCCCGGCCGGCGCTTCCCTCGTGTTCAAGTGCAAACTGTGCTCGGCACGCTTCCAGAAGCAGAAATCGATGACCTGGCATCTGAAAACGCACCGCTCGATCGTGGCCGCCGGCGAGGACAAAGAGGCGAGCCCCACCAAGGAGCTGGGCAGTCCGCTGTCGCCCAACTCGGCGGCCACGGCGTCTGCGAATGCGTTTGCGGCGCGGTTGGATTTGAAGCCACAGCAGCCCCAGCCGACGTCGTCCTCGTCGACGGCATTGCAGCAGATTCAGCAGCTTCAGCAGGCGGCATTGCGGGgaatggctgctgctgctgctgctggaggagCCAAGATGTACAAGTGTGGATACTGTCCGCAGAAACTGGATTCGGAGGATGCTTACTACCAGCATTTGAAGGGTCATCGAGTCCGACCGGCGACCGACCCGCTCCAGCCGGATGAAGAAACGCCCCCGGCCAAGAAGAAACGGTCCTGGGTTCGTTCGGGCGAGCACCACAAGTGTCACCTCTGCCAGAAGGTGTTTACGTTCCGCAGCCAGCTGCAGCAGCACACGGCCCTACATCATCAGCCGGGCAAACCGTACGAGTGTGGCAAGTGCCACTACAGTTTCGTGCACAAGCTGAACCTCAAGCGGCACGAGCTGACCCATCTGGAAGAGGAGCGCGTGTCCGCCGAGGATGATCCGTCGATTCAGCTGCTCGAGGACGAAAGCTTCAACGCGGAGGAACTCGCCGAACCGGACGAGATGAGTCCGGCCGTAGTCGGACTGATGCCGGTGAATCGTGGCGGCGTCGGCAGCGAAGCCGGTGACAAACAGTCCGGCGAGGGCGTTGGTCCACCAAAGAGAAACAAGTGTGTCGTCTGCGCGGCCACCTTCCAGCGCGAGGACCAGCTGATCGAGCATCTCAAGACGCACATCGAGCGGATGAAGGTCACCAAGCAGGAGACGCAGTCCGCCAAGAAGATACTCACGGACGACAGCGACAAGAAGTGCAAACTGTGCGCGAAGGTGTTCAAGTTCTCGTGCCAGCTGAAGCAGCACATTCAGATGCATCACTCCAAGGATAAGCCGTTTGAGTGTAACATTTGCAGGTATCGGTTCGAGTTCAAGGGTCACATGCTCCGTCACAAGGCCAACAACCACCCGGACGAGCTTGCAGCCGAAGAGGCCGACGCGGACGAGCTGCCGGCGAAGATCACGACACCGACGGTTAACCCAGATGGGTCCGAAGTGTACCAGTGTCCGGTATGTCCGATGAACTTTGTCAAGCAGCGCTCGCTCACCTGGCACCTGAAGACGCACAGTGGCGCCGGCAGCGGCCGGAAGATCAAACGGGAAGACGGCGGTGGTGGTGGCATTTACCCGTCGGCGTCGTCCTCCTCCTCGACGGGAGAAGTCTTCCAGTGCCGGGTTTGTACGCGGTTGTTTAACGATGCGTACGAACTGAAGGCGCACATGCTGACGCACGCTGGCAGTTCCACCAGCTCCAGTGGCCAGGTCATCGAGGCCGACCATTCGCTGTTTGGATCCGGGCTGGACATGATGCTGCAGGACTTCCCCGACACGATGGAGGACACCGATCCGCTGTTTGACGGCTCGAACCTGGAGTTGGTGCTGGAGGACAACTTTGACCATGATCTCGACTTTAGCATGCGCTACAACCAACCGCAAGACACGTCGTCGTCGCTTCCACAAACCAGGAGAAGTCTTCCGACCGGCGGCATTGCTAACGACAGTTCCGTTTACGACATGGCCGAACCGGGCGCCTCGACGACACCGGCCAAGGGCAAAATCGTGTGCGAGCTGTGCAAGAAGGATTTCCTGTACTCGTGCAACCTGAAGCAGCATATGCAGCTGCACCACGCCAAGGAGAAGCCGTTCGAGTGCAAGATTTGCTTCTACCGGTTCGAGTACAGCGGCCATCTGGTGCGCCACATCCGCACGAACCACGACAACCAGCAGGAGGACGCCATCGGGGACGCGATCGAGCGGAACTTTGTGTGCACCTTCTGTTCGGAGCTGTTTGAGCAGAAATCACAACTTAACTCGCACATCCAGACCTATCACAGGGGCGAGAAGCAGTTCAAGTGTGACTTGTGTCCGGCGTCGTTTGCGTACAAGAAAACGTTTGAAAATCATCGCGAAGAGCACCACTCGATCAAGCCCGGTGAACCATCTGCCGCTCCGTTTGTTGCTGCCGCAGTCGTTGCACCGCCGCCCAGTGTTGCCAGCGGTTCCGCCAACTTTTCGTGCAATTTATGCAAGAAGACGTTCAGCTCGGCACAAAAAGTGGACAACCACGTTTGCTTCCAGTGA
Protein Sequence: MEQPEIAAVDDAPALPPSSNRSNSTSSSESGSSSSGSSESSQEVNDDGGQQGEEGGTNGRSSSADYPAVMPPPPPAVNTLCRICMCDPAEDGRMLESLFRTTVDSKTLYAMLVTVVPLGQGNNDGMPDKVCTSCKGKLVQAYRLYETCVKSDERLRKLLQLQNSAGGVLIKQEIIDEDDEDVELANFQLYCDAQVKKEDEYDQDYLFDGGFYGVGLAAAHYNTPNLRIQSVHNGPEVLVQLQEGLDAPSQPAVEWDKYVKVTPNGHHCILCGKDFKYFSYFKQHAIAQHDPSKPHKCHQCKYTFKTEQRLFLHMRTHLEQQAEELPLAVEHAELPEPELEIEGTLDLDQSEDSIVDDESVSISINPDNGEKIYTCLICQKQLTTLPLYRRHQTVHTVRGRPFECEICHYRFAMKFSYNAHMLRHEQGKDPAQPAAYKCAECPQTFVRRKLLNLHVAVNHEKPTVYLNRTAPAAILTSNISEGRGGHACPICSETFNRESVLNNHMKMHELEAAQLKHSEVCYICNVCGVECETRDSFTTHIKTHGDDIALEHQNNSMDVDDDDDDPAMPPTPQNGATDPLSTSTPTSKPEPKSGVRCELCSKTFPYACNLKQHRIIHHSELKPHECHICHYRFEYEGTLMRHMQKHSKQELSAAAAATNTPTTIPSLPQPEDPIVAPAGASLVFKCKLCSARFQKQKSMTWHLKTHRSIVAAGEDKEASPTKELGSPLSPNSAATASANAFAARLDLKPQQPQPTSSSSTALQQIQQLQQAALRGMAAAAAAGGAKMYKCGYCPQKLDSEDAYYQHLKGHRVRPATDPLQPDEETPPAKKKRSWVRSGEHHKCHLCQKVFTFRSQLQQHTALHHQPGKPYECGKCHYSFVHKLNLKRHELTHLEEERVSAEDDPSIQLLEDESFNAEELAEPDEMSPAVVGLMPVNRGGVGSEAGDKQSGEGVGPPKRNKCVVCAATFQREDQLIEHLKTHIERMKVTKQETQSAKKILTDDSDKKCKLCAKVFKFSCQLKQHIQMHHSKDKPFECNICRYRFEFKGHMLRHKANNHPDELAAEEADADELPAKITTPTVNPDGSEVYQCPVCPMNFVKQRSLTWHLKTHSGAGSGRKIKREDGGGGGIYPSASSSSSTGEVFQCRVCTRLFNDAYELKAHMLTHAGSSTSSSGQVIEADHSLFGSGLDMMLQDFPDTMEDTDPLFDGSNLELVLEDNFDHDLDFSMRYNQPQDTSSSLPQTRRSLPTGGIANDSSVYDMAEPGASTTPAKGKIVCELCKKDFLYSCNLKQHMQLHHAKEKPFECKICFYRFEYSGHLVRHIRTNHDNQQEDAIGDAIERNFVCTFCSELFEQKSQLNSHIQTYHRGEKQFKCDLCPASFAYKKTFENHREEHHSIKPGEPSAAPFVAAAVVAPPPSVASGSANFSCNLCKKTFSSAQKVDNHVCFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00400808;
90% Identity: iTF_00400808;
80% Identity: -