Basic Information

Insect: Culex quinquefasciatus
Gene Symbol: -
Assembly: GCA_015732765.1
Location: NC:46304951-46344744[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 8e-05 0.0023 18.0 0.1 1 23 184 206 184 207 0.95

2 19 0.0043 0.12 12.6 0.1 1 23 209 232 209 232 0.94

3 19 4e-05 0.0011 19.0 0.7 3 23 248 268 246 268 0.96

4 19 0.00065 0.019 15.2 0.7 1 23 274 296 274 296 0.98

5 19 1.5e-06 4.2e-05 23.5 1.0 1 23 302 324 302 324 0.99

6 19 7.4e-05 0.0021 18.2 1.3 1 23 330 352 330 352 0.98

7 19 3.5e-07 9.9e-06 25.5 0.7 1 23 358 380 358 380 0.97

8 19 0.00017 0.0049 17.0 1.7 1 23 386 408 386 408 0.96

9 19 0.055 1.6 9.1 5.3 1 23 1464 1487 1464 1487 0.96

10 19 0.0022 0.063 13.5 2.0 1 23 1492 1514 1492 1514 0.96

11 19 0.00082 0.023 14.9 1.2 1 23 1520 1542 1520 1542 0.96

12 19 0.02 0.56 10.5 5.2 1 21 1548 1568 1548 1570 0.94

13 19 0.00026 0.0074 16.4 0.5 1 23 1576 1598 1576 1598 0.97

14 19 2.6e-05 0.00075 19.6 0.4 1 23 1604 1626 1604 1626 0.98

15 19 7.2e-06 0.00021 21.3 0.3 1 23 1632 1654 1632 1654 0.98

16 19 2.1e-05 0.00059 19.9 0.2 2 23 1664 1685 1663 1685 0.97

17 19 7.2e-05 0.002 18.2 0.7 3 23 1693 1713 1691 1713 0.97

18 19 1.1e-05 0.0003 20.8 1.8 3 23 1721 1741 1719 1741 0.97

19 19 0.0011 0.031 14.5 1.0 3 23 1749 1769 1747 1769 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	8e-05	0.0023	18.0	0.1	1	23	184	206	184	207	0.95
2	19	0.0043	0.12	12.6	0.1	1	23	209	232	209	232	0.94
3	19	4e-05	0.0011	19.0	0.7	3	23	248	268	246	268	0.96
4	19	0.00065	0.019	15.2	0.7	1	23	274	296	274	296	0.98
5	19	1.5e-06	4.2e-05	23.5	1.0	1	23	302	324	302	324	0.99
6	19	7.4e-05	0.0021	18.2	1.3	1	23	330	352	330	352	0.98
7	19	3.5e-07	9.9e-06	25.5	0.7	1	23	358	380	358	380	0.97
8	19	0.00017	0.0049	17.0	1.7	1	23	386	408	386	408	0.96
9	19	0.055	1.6	9.1	5.3	1	23	1464	1487	1464	1487	0.96
10	19	0.0022	0.063	13.5	2.0	1	23	1492	1514	1492	1514	0.96
11	19	0.00082	0.023	14.9	1.2	1	23	1520	1542	1520	1542	0.96
12	19	0.02	0.56	10.5	5.2	1	21	1548	1568	1548	1570	0.94
13	19	0.00026	0.0074	16.4	0.5	1	23	1576	1598	1576	1598	0.97
14	19	2.6e-05	0.00075	19.6	0.4	1	23	1604	1626	1604	1626	0.98
15	19	7.2e-06	0.00021	21.3	0.3	1	23	1632	1654	1632	1654	0.98
16	19	2.1e-05	0.00059	19.9	0.2	2	23	1664	1685	1663	1685	0.97
17	19	7.2e-05	0.002	18.2	0.7	3	23	1693	1713	1691	1713	0.97
18	19	1.1e-05	0.0003	20.8	1.8	3	23	1721	1741	1719	1741	0.97
19	19	0.0011	0.031	14.5	1.0	3	23	1749	1769	1747	1769	0.98

Sequence Information

Coding Sequence: ATGGCCACCGTCGTTCCCGagtgctgccgctgctgcctgACCGAGGACGAACGCGACCTGATCTTCGTGTTTGACGTGCTGGATGAGTTTGAGAGCCGCATTTGCGACCTGATTGAAACGTGCGGCGGCATCGAGATTACGGAGGACGACGCCTACTCCAAGAGCATCTGCGGCAACTGCCTCAACGATCTGGCCAACGCGGCCCGCTTCCGGGACCGGTGCGCCAAGACGGAACAGGTGCTGCAGAACGCATCGATTACGGTGgtcgaggacgacgacgatgtgGTGTTCGAGCAGGAGCAGGACCAGCTGGACACGGCCGGGCTGGTAAAGCTCGAGGAGGAAGACGGTGACACGCAGGACAGCGGCGAGCCGAGAATTCAGTTCATCATCGCCGACGATCCGAACGATCCCGAGCTGGCCAAGTTCGACTACGACGAGCTGATCAGCAGCCAGGACAGTGAACTGCTGCCGGATGACTTTGAGGTGGTCAAAACCAAagagaaaaatgttgaaaaggtgGTTCAACCCCGGCCACTACAGCTGAACTTTGTCTGTCCGGAATGCGGAGCGGGCTTCGCGATGCAGAAGAATCTGGTCAAACATTTGGCCAGTCACCACAGCTTCGTGTGCGGAGTTTGCCTCAAGACGTTCGAGAACGATTCCGCACTGCAGACTCACTTGGCTCAAAGTCACGACGACAACAGCCCACCAACAGACAATCCAAAGAAGAAACACTTGTGCGAGTTTTGCCGGAAGGCGTTCGTGTCCAACTCTGCGCTCACGGCTCACATCCGCGTCCACACGAAGGAGCGCCCCTTTCCGTGCAGCTTTTGCACAAAACGGTTCCGCACCGTCGGAGCGCTGGAGCTGCACGAACGACGCCACAACGGAATCAAGCCGTACAAGTGCGACATCTGCGGGCGTGGCTTCGCCGAGTCGAGCAATCTCAAGGTGCACCACCAAACGCACACCAAAGAAAAGCCCCACGTTTGTACCGTCTGCAATCGGGCCTTTGCGCGGGTCTTCCTGTTGAAGATTCACCAGCGAACGCACACCGGAGAGCGGCCCTTCGCCTGCCAGGATTGCGGGAAGTGTTTTTCGCAGCAGGGAGATTTGGCCGCGCATCGGAGGATTCACAGCGGTGATCGGCCCCACGCGTGTGACCTTTGCGGGCGCACCTTTATCAAGAGCAGTGGCCTGCTTCAGCATCGCAAGAGGCACAAGCTGGCGCTGGGTGGAGAAGCGCTGAACGGCGTGGAGGAACTCATTGTCGGGGAGTTTGACGGGGTTCAGGTAGAAGACGGGCACGGTGAGGAGGACGAGAGTGGGGACGGTGAGGAGGTGTTGGGTTTAGtgCAGTGCCGACTGCAGCTTGGAATCGGTCACGCCCGTCCCCATCGGGATCTCGACGCCGTCCGGTCCGACGTAGGCGCCGGCCGGGTTGGGTTGCGTTTTGCCGACACCCTTGCAGCTGTGCATGTTGTCCGGGAGTTTCTGCACGTACCGGGCCTGGTTCAGCTCCATCATGTTACCGAGGGCCACCTCGCACAGCAGCATCAAACCGGTCGAGTTGGCCGGCGAGGTTGCGCAGTAGTTGGCGGATTTGGACACCATGTCGGCGAAGTAGATACCCTTGCCGAACATGTACCCGGTGACGGGGGCCTCCGGCGGGGCGATCTTGAGACCGTGCGTGAGAATACCGACAAAGTTGGTAAGACGCGATCCGTGCCAGAGGAGTTTGCGGTTGTGCAGCTTGCGGAACGGTTTGTAGCGACGCTCTTCGCCCTTGCGGcggattttgaagatttcggaCACTTCCAGGTCGAACTGGTTGTGGGTGGCGGCGTGCGTGTTCTTGACGTACTGGGCCAGGCGCTTGAATTCGTCGGACTTTTGGTCCAGCGTTTGCATCTCCGTCTTGAGCTGCTCGTAGTGGCCGTCGAGCGGATTTTTGGTTTCGTCCGTGTCGGCGTTCAGCAGACTGTACGCGATCTCGATCTCCATCAGGCTTTCGAGCATGGTTTGCTTTTCCTTGATCTGCTCGACGGTGTCGAGAACGGTCGGCGTTTGGACGCCAAAGTTGTGTGGAATGAACGTGTAGAAGCGGTTGGAGGCGTCGATGAACTGCGGGTTGGATCCACCGTTGGCGATCAGAGTGGGGGCTTCTCGCGCTTGATCTTCGGCTCTGTCAGCTCTTCCTCCTTCTTGACCTTCTTCATCGTGGTGCTCAGACTCGGTGGGACGTACTTGATGACCCGATCGCTCACCACCGATTTGTACTTGGCCAAGAAGCGAAACTGTAGCTTGATCTCGTCCGGAATTATGGCCGGAACGCGCGCTGGTTTGGCCTCCGCCGTCAGGCACTTGACCCACTCGGTGAGGTTGCCCTCACAAATGCAGCGGCCGGTGGACGGCCATTTTCCCGTCGGCCCGGAACTCCACGACCAGCAGCCATCGCGCAACGGCCAGCAGCACCGATCAACTGGCCCCGTACATGGTGTCCCCGCACTTCCCGGTGATCAACAACCGATCGCGATGTTCCACGGATTGGCATCCATCGGCCCGGGTCCGGCTCAAGCGGCATCGTACGGCAACGTCCATCCGGGAGGCCCCTGTCATCACGCCCCAAGTCCCGGACAACCCATGCTCTCCCTCGACCAGATGATGCTCCGCTGTTCGTCGATGATGGACCTCCtggtccagcagcagcagcatctccAGCAAGCTCTATCAACAATGGCGGCCGCGCCATTTTCCTCGCTCCGTTCTATTATCAAGATGTGCCCCGTGTCGTCCGTACCATCCGAGAACGATCGATCGCATCTGAGGGCACATACCATCGACACATCCACCTCGCTAGCAAGTCCGGCTCAACCAACGCGAGACCTTGAAGCTGCCGAGCACACTCCGCAGCCAGCAGGTGGACATCTCAGTGACGTCGTAGGCGACGATCACGATCGCCGGAAGCTCGTCCAGGACCCCAAGCAACTCCCTCAAGTGGACAGTTCCGGTCAGCGGCTCCTGCCCAAGCCAGCGAACCCAAACAACCACCTGATCACCGAAGATCCTCCGTCGACAACCGCGCAGAATGAAGTTACTGCCGACGTCATCGACCAGCATCGGGAACTGCCCTTCATCTGCTCGACATTGTATGCCGCCCCAAAGGATCTCGGTCGGCACAAGCAGATAAACATCATCCCGATGGACTACACGAGTTGGCAATTTTTATCATCACCGAGCAAGGTCGTAGCCAGCGCGCATGGCTCCCTTCAGCTGCACATCGGCACCAGAGGACTGCGGCCGAAAGAAGCCCGCGCGATGGACGGCCGTTTCGTGACATTCTGCGCGGAGCAGGCGCAGCCCGACAGTGAAGCAATTCCGGAATCCTCCTCCGTCGTGGTCGTCACGGAAGAGGACGATTCTGGCGAGCCGCAAGTCGCGCCGACGGCTGGTGGTCCACCGAAAATTGTTTACCTGGACCGGGTTTGTCGGACGTGTTTGGTCGAGAAGGAAAAGGATGACCTGAAGGATCTGTTTGAATTTGGGCTGGCGGAAACCGTCATGTCCTGTGTGGGTCGGGTCATTTCGGTTGAGGAATCGGACGGGTTGCCGGGTCACATATGTATGGAGTGTCTGCAGGAGGTGGAACGGATCATTAGCTTCCGGCAGCAGTGCGAGCGGTCGGACGGCACGATCCGGGACTTGATCGAGAAATCCGTTGTGATCAACCAAGACAGTGAGACCAAGTACGAGGTGCTGAATGTGGTGCTGACCGATGCCAACGGGAACACGGAAACGTCGGCCGTGGTCGTTCCGATTGAGGAGCTGCGTTTTCAGCTGATGAACGGCGGCGGGGGAGGAAGGTGTTCCGAGGAGATTGTGGAGACGGAATCGACGACCAGCGAAAACGTCGAGCTGAGCTTCGTGGCTCCGTCGGACATACTTGTAACGGAGGAGATCATCGTCCAATCCCAACCGGAAGAGGACGCTCCGATCGGCGAACTGATTGTCGAAGAAACGCCTTCGGAGCACGAGCAGCAGCAGGAATCGACTGTTCTGGAAAACCTACGTCAAGAACTGTCAGAATTCATCGGCGGAACGAGCGCGGAGATTCCCAAAGATCAACAAGACCTGGACGAAAACGGCGACGACGAATTACCTTACGATTACCTTAAAGATGCCCTCACGGACGAGTACATTCAGTCGATGGAACAGCAGCTGGCCCCGTCGGCACCTCCGCGGTCGGAAAATCCCGCCCAGGATCGCTTGGAGCAGGCCAACCTGGACAGTCTGATCAACGATGAGGCACAGCAGCTTCGAGAGTCGGATCGGTCCGGTGACGGTGATAGCATTGCGAGCGAGAAGGACCATGGCACCAGTAAGCACCACCACTGCGACGTTTGTAACGTGGGCTTCGAAAATCGGCGCAAGTTCCGGGTGCACATGAAGAAGAAACATTCCGAGAAACAGCACGCGTGCAGCTACTGCTCGCGCCGGTTCGCCGAGCAGAAGGAGCTGCGGAGCCACGTGCTGCGGCACACCGGCGAAAAGGCCCACGCCTGCGAGATATGCAACGCGCGCTTCTACGAGCGCAACATGCTGAACGTGCACATGCGGCGGCACGACGGTGAAAAGCCGTACTGCTGCGAGTTGTGCCCAAAGCAGTTCGGGACCAAAAGTCTGCTCAACACCCACCTCAAGTGTCACCTCAAGTCAAAAGACCACGTCTGCGACGTGTGCGAAAAGGGCTTTACGCTCAGCTGGCAGCTAACGGCCCACAAGCGCATTCACACGAACGAAAAGCCGTACGAGTGTCCGTACTGCCTGAGGCGGTTCAACCAGAACGGGAATCTAGTGATTCACAAGCGAATCCACACGGGCGAGCGGCCTTTCCAGTGTGAACTGTGCGAAAAGGCCTATCCGAGCCAGGGAGAGTTGAGGAACCACATGCGGCAACACACGGGCGAGAAAAAGGTCAAAAACGTAACGTGCACCGTATGTCAGAAGAGTTATGCCGGAAATGGGGACCTCAAGATCCACATGCGAACCCACACCAAGGAGAGGCCTTACGGCTGTCAGGAGTGCGGGAAGACGTTCATGCTGCAGGTCCACCTGACGGTGCACATGAGAGCCCACACGGGTGAAAAGCCCTATGGGTGCGAGCTGTGTCAAAAAGCATTTACCACAAACTACCAGCTGAAGCACCACATGCAAGTGCACACGGGCGAGAAGATCTACGGCTGCGATTTATGCGACCGGCGGTTCAGCAGCGCTGCCAACCGGAACACCCACCGCAAGACGCACGAACGGACAATTTCCTGA
Protein Sequence: MATVVPECCRCCLTEDERDLIFVFDVLDEFESRICDLIETCGGIEITEDDAYSKSICGNCLNDLANAARFRDRCAKTEQVLQNASITVVEDDDDVVFEQEQDQLDTAGLVKLEEEDGDTQDSGEPRIQFIIADDPNDPELAKFDYDELISSQDSELLPDDFEVVKTKEKNVEKVVQPRPLQLNFVCPECGAGFAMQKNLVKHLASHHSFVCGVCLKTFENDSALQTHLAQSHDDNSPPTDNPKKKHLCEFCRKAFVSNSALTAHIRVHTKERPFPCSFCTKRFRTVGALELHERRHNGIKPYKCDICGRGFAESSNLKVHHQTHTKEKPHVCTVCNRAFARVFLLKIHQRTHTGERPFACQDCGKCFSQQGDLAAHRRIHSGDRPHACDLCGRTFIKSSGLLQHRKRHKLALGGEALNGVEELIVGEFDGVQVEDGHGEEDESGDGEEVLGLVQCRLQLGIGHARPHRDLDAVRSDVGAGRVGLRFADTLAAVHVVREFLHVPGLVQLHHVTEGHLAQQHQTGRVGRRGCAVVGGFGHHVGEVDTLAEHVPGDGGLRRGDLETVRENTDKVGKTRSVPEEFAVVQLAERFVATLFALAADFEDFGHFQVELVVGGGVRVLDVLGQALEFVGLLVQRLHLRLELLVVAVERIFGFVRVGVQQTVRDLDLHQAFEHGLLFLDLLDGVENGRRLDAKVVWNERVEAVGGVDELRVGSTVGDQSGGFSRLIFGSVSSSSFLTFFIVVLRLGGTYLMTRSLTTDLYLAKKRNCSLISSGIMAGTRAGLASAVRHLTHSVRLPSQMQRPVDGHFPVGPELHDQQPSRNGQQHRSTGPVHGVPALPGDQQPIAMFHGLASIGPGPAQAASYGNVHPGGPCHHAPSPGQPMLSLDQMMLRCSSMMDLLVQQQQHLQQALSTMAAAPFSSLRSIIKMCPVSSVPSENDRSHLRAHTIDTSTSLASPAQPTRDLEAAEHTPQPAGGHLSDVVGDDHDRRKLVQDPKQLPQVDSSGQRLLPKPANPNNHLITEDPPSTTAQNEVTADVIDQHRELPFICSTLYAAPKDLGRHKQINIIPMDYTSWQFLSSPSKVVASAHGSLQLHIGTRGLRPKEARAMDGRFVTFCAEQAQPDSEAIPESSSVVVVTEEDDSGEPQVAPTAGGPPKIVYLDRVCRTCLVEKEKDDLKDLFEFGLAETVMSCVGRVISVEESDGLPGHICMECLQEVERIISFRQQCERSDGTIRDLIEKSVVINQDSETKYEVLNVVLTDANGNTETSAVVVPIEELRFQLMNGGGGGRCSEEIVETESTTSENVELSFVAPSDILVTEEIIVQSQPEEDAPIGELIVEETPSEHEQQQESTVLENLRQELSEFIGGTSAEIPKDQQDLDENGDDELPYDYLKDALTDEYIQSMEQQLAPSAPPRSENPAQDRLEQANLDSLINDEAQQLRESDRSGDGDSIASEKDHGTSKHHHCDVCNVGFENRRKFRVHMKKKHSEKQHACSYCSRRFAEQKELRSHVLRHTGEKAHACEICNARFYERNMLNVHMRRHDGEKPYCCELCPKQFGTKSLLNTHLKCHLKSKDHVCDVCEKGFTLSWQLTAHKRIHTNEKPYECPYCLRRFNQNGNLVIHKRIHTGERPFQCELCEKAYPSQGELRNHMRQHTGEKKVKNVTCTVCQKSYAGNGDLKIHMRTHTKERPYGCQECGKTFMLQVHLTVHMRAHTGEKPYGCELCQKAFTTNYQLKHHMQVHTGEKIYGCDLCDRRFSSAANRNTHRKTHERTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -