Cqui013707.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:162496319-162499131[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 6.3e-07 28.7 0.0 2 44 10 52 9 53 0.89 2 2 4.1 2.5e+03 -2.0 0.0 34 45 117 129 110 129 0.75
Sequence Information
- Coding Sequence
- AtggagaaaaatacaaaaaaatacagtgaGCAAGACCTCAGTTGTGCCGTCGCGGAAGTGAAAGAGGGCAAGTCGACGTTACGCGCGGCCGCAAAGGCTCACGGAATACCAAAAAGTACTCTCGAGGACAGAATCAAGGAGCGATGGAGTACAATGCCGGAAGGATCCCGTGGGGCACCCACTGCGTTGTCCGCCGAAGACGAAGCCTTCATCGTAAGCTGGATTCTACAGATGGCCGCAGCCGGATTTCCGGTCAACGAACGCAGTCTCATTGTGAGAGTGGCGGAGTTTGCCAAAAACTTGGGAAAGGAAACAGCATTTCAAGACGGGATTCCCTCCAGAGGTTGGATGGCTCGATTCTTGCAGCGACATCCACAGCTGTCGAGACGGACCGCCAGCATCATGTCCAAGAAGCGGGTCATCACGGAAGAGGATGTACGGGGCTGGTTTGCTGAAGTTGGCGGGGATCTTATGAGCAATGAGGAGTACCGAGAGGCATTGAAAGATCCAAGCCGGGTCTCGAACATGGACGAAAGTCCTTTTTGCCCGGTTGCCAAGAAACAAAAAGTCATCGCCAAGAAGGGTACAAAGCACGTCCCTTGCACGACCCCAAACAACAGCCGTGAATCCTACACCGTGCTGATGGCGGGTTGTGCTGACGGCAAGGTAGCTCCTCCGCTAATTGTCTTTCCGTACAAAGAGCGAATGCCGACCGAGGTTACGAGGAGTGTCCCGCGCGGTTGGGGGATCGGCAAAACCGGATCCGGATGGATGAACTCGATTGCATTTTTTGAGTACATCTCGAAAATTTTTTACCCGTGGCTTCTACAGCAGCAAGTAAAGTTCCCGGTGATTCTCACGCATGTGATGCAACCTCTTGACGTCGCATTTTTTGCACCCATGAAGGCTCAGTGGGAGTTTGAGCTGAAAGAATGGCTGCTGCAGAAGAAGTGCAAAAGTCTTCTTCGAACAGATTTGGCTCCTCTCCTCGAGAAGACGTTGAACGCCATGGGCCACAAAGAGGAATCTTTGGTGCACGGTTTCCGGAAGTGTGCACTTGTGCCGTTTGATGTAGACGCGTTCGATTTTTCCCAGCTCACGGATCCGGCTGATGCCCCACCGAACTTGACGGATATGAATAGATCTAAGACTGAAATCGTTGAAATCCATCCGAACTCCGCAGACCTCTCCGGTTGCCAACAGTTGAAGGAGTCAGAACTTCTGCAAACCTTAAACAAAAGATTATCGCCAACTCAGTTCGAGCTCTTTGTTCAGCATCGGAACAAATTGTCATGGTGTGGACCCGTAGAAGATTCTGGGTTGTTCTATTTCTGGAGAAATCTCATGGATGAGATTGAAGGGCCACCAGATTATTTGATGCTGGACTCTCCGTTCAACGAGGTCATGATTGATGACGCAATTTACACTGAAGAGCTTTCAAACGAACTTAAAGAagATAAAACCTCAGCTGCCTGTGGTGACGCTTTCGACGCAGATGAAGATTCCGGATTTGAATCATCGATGCAAATTGCATTCCCTCCCCAAGATGGCGCTGCTGGAGATGTGGATTGCCCGGATGAGAATTTCGAGGAGCTCGACGGCCAGAATCGATCACAAacagATGTTAAACCGGCCCAATCTCAGCAGCCCAAATCTAAGAAAAGAACCTACCCGTCAGTTGCCACAAGCGACGAGTGGTTCAGAATTTATCAGGAAGAGGAAGCGGAAAATCTCGCTGTGGAAGAGGCAAAGAAACTGCGTATCCAGCAACGAGCTACGAATAAAATGCAAAAGGAAAAGGAGAAGCAGCAAAGAGCAGACGAAAGACTCAAGAAGAAACTCGACAAAGAAAAGTGCAAGAAGCGCTAA
- Protein Sequence
- MEKNTKKYSEQDLSCAVAEVKEGKSTLRAAAKAHGIPKSTLEDRIKERWSTMPEGSRGAPTALSAEDEAFIVSWILQMAAAGFPVNERSLIVRVAEFAKNLGKETAFQDGIPSRGWMARFLQRHPQLSRRTASIMSKKRVITEEDVRGWFAEVGGDLMSNEEYREALKDPSRVSNMDESPFCPVAKKQKVIAKKGTKHVPCTTPNNSRESYTVLMAGCADGKVAPPLIVFPYKERMPTEVTRSVPRGWGIGKTGSGWMNSIAFFEYISKIFYPWLLQQQVKFPVILTHVMQPLDVAFFAPMKAQWEFELKEWLLQKKCKSLLRTDLAPLLEKTLNAMGHKEESLVHGFRKCALVPFDVDAFDFSQLTDPADAPPNLTDMNRSKTEIVEIHPNSADLSGCQQLKESELLQTLNKRLSPTQFELFVQHRNKLSWCGPVEDSGLFYFWRNLMDEIEGPPDYLMLDSPFNEVMIDDAIYTEELSNELKEDKTSAACGDAFDADEDSGFESSMQIAFPPQDGAAGDVDCPDENFEELDGQNRSQTDVKPAQSQQPKSKKRTYPSVATSDEWFRIYQEEEAENLAVEEAKKLRIQQRATNKMQKEKEKQQRADERLKKKLDKEKCKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -