Cqui000640.1
Basic Information
- Insect
- Culex quinquefasciatus
- Gene Symbol
- -
- Assembly
- GCA_015732765.1
- Location
- NC:17484472-17486669[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.9e-12 5.5e-09 35.3 0.1 2 39 256 294 255 298 0.90 2 4 7.6e-13 4.7e-10 38.7 0.1 2 39 310 347 309 350 0.94 3 4 8.5e-19 5.3e-16 57.8 0.0 3 45 366 409 364 409 0.97 4 4 7.8e-17 4.8e-14 51.5 0.0 1 43 416 459 416 460 0.97
Sequence Information
- Coding Sequence
- atgacGACTCGTGGAGTGGAAATGAACGGATCCGTGATGGGAGTTGCGATGGGCTACCTGGATTTTGCCCCGGAACCGCCGGCACCAACTGCTGTACCGGTGACGGAACATGGCGACATGAACGGTGCCGCAGGCCACGAAACTCGTGAGATAGCATCAACAAATGCCGCCACAGTCGCCATTCCGTCGAACGGTGGAGGTGACGTGCGGATTAAATTCGAAACTCTCCAGCCGCACGAAACTCAGGAAGCGATTACGCTGTACAATCCGGTTGGCCACCAGATGCATCTGCCGGGTCATCACCAGATCCAGCATCAGCAGATTATCTATCTGCCTCCGCCCCAGCATCAACAACATGTCGTCTTAATCGATCAACACTCGCAGCAGCACCTGCACAGCCCGGTGTCGTACGCGTCCGGCCTAACCGGTCACCTTAATCCGGATGGGCTAGTGACGATTGCTCCGTCAAACGGAAACGGTGCCCCGCTCGAAATGGGTACGCAAATCATTGTCAAGCAGGAAGTGATTTCCGAAGAGGATCATCATCAAcaacatcaaattcaagtggAGCAAGATCAATCATCGATGCAGAGCATGGCCGAACCTTCGGAAGGATCCGGAGCGATGAGCCAGAGCTACCAATCGGACGCCAGCGAGGAAATCAAGAATGGAACAATGGACGAATCCTCCGGACAGTACAGCAATCTGGAAAGCCCCACCAACTCGAACGATCCCAAAACCCCAAATGCTCCGAAAACTTGGACCGCAGAGGACATGGAATCGGCCCTGGAAGCCCTGCGCTCCCAAAACATGAGTCTGACCAAGGCATCGGCCACTTACGGGATTCCGTCGACGACTTTGTGGCAGCGAGCGCACCGCCTCGGCATTGACACTCCCAAAAAGGAAGGTCCGTCCAAGACCTGGAACGAGGAAGCACTCAATAACGCTCTGGACGCGCTACGATCCGGAACCATCTCCGCTAACAAAGCTTCCAAGGCGTACGGAATCCCATCTTCCACGCTGTACAAGATCGCTCGCCGTGAAGGTATTCGGCTGGCCGCCCCGTTCAACGCTGCTCCCACCAGCTGGTCCGCCGAAGATCTGGACCGTGCCCTCGAAGCGATCCGCAGTGGACAAACTTCGGTCCAAAAAGCCAGCACCGAGTTCGGAATTCCAACCGGAACCCTCTATGGACGCTGCAAACGCGAGGGAATCGAGCTGTCTCGGACGAACCCAACTCCGTGGTCCGAGGACGCCATGATGGAAGCGCTGGACTCGGTCAAGCAGGGACACATGTCGATCAACCAGGCCGCGATCCATTATAATCTGCCGTACAGTTCGCTGTACGGGCGGTTCAAGCGTGGCAAGTACGAGACACCAACCAACGGAGCCCAGAACCAGAACAACGTGGTGAACCACGGAGGCGGTGGTGGCAACGGTGGCGGCGGACAGGTCAACTACTTAACCACGCAGGTCGCGCCGATGCAGGGTATCGCGAGCAGTCCCCAGATGGAGTTCAGAATTGAACCGCCGCCGCAGCATTACGAGCACAACCCGGCCAACATGCAGCACTACAATCCACTGCCAACGATGCAGCAGAATTACTTGAACTTTTCACAGCATTAA
- Protein Sequence
- MTTRGVEMNGSVMGVAMGYLDFAPEPPAPTAVPVTEHGDMNGAAGHETREIASTNAATVAIPSNGGGDVRIKFETLQPHETQEAITLYNPVGHQMHLPGHHQIQHQQIIYLPPPQHQQHVVLIDQHSQQHLHSPVSYASGLTGHLNPDGLVTIAPSNGNGAPLEMGTQIIVKQEVISEEDHHQQHQIQVEQDQSSMQSMAEPSEGSGAMSQSYQSDASEEIKNGTMDESSGQYSNLESPTNSNDPKTPNAPKTWTAEDMESALEALRSQNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEEALNNALDALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWSAEDLDRALEAIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRTNPTPWSEDAMMEALDSVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYETPTNGAQNQNNVVNHGGGGGNGGGGQVNYLTTQVAPMQGIASSPQMEFRIEPPPQHYEHNPANMQHYNPLPTMQQNYLNFSQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400480;
- 90% Identity
- iTF_00400480;
- 80% Identity
- -