Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:20678151-20680814[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0081 0.25 12.4 0.2 2 23 356 378 355 378 0.95

2 11 0.54 16 6.7 2.6 1 23 415 438 415 438 0.96

3 11 4.5e-05 0.0014 19.5 1.1 3 23 454 475 453 475 0.97

4 11 0.00055 0.017 16.1 1.2 1 23 481 503 481 503 0.98

5 11 0.14 4.2 8.5 12.6 1 23 511 533 511 534 0.96

6 11 0.025 0.78 10.8 0.7 1 23 541 564 541 564 0.94

7 11 0.058 1.8 9.7 4.8 1 23 603 626 603 626 0.97

8 11 0.0064 0.2 12.7 1.1 1 23 629 652 629 652 0.93

9 11 0.0022 0.068 14.2 2.5 2 23 668 690 667 690 0.94

10 11 0.0039 0.12 13.4 1.0 1 21 696 716 696 719 0.95

11 11 0.073 2.2 9.4 2.1 1 21 725 745 725 746 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0081	0.25	12.4	0.2	2	23	356	378	355	378	0.95
2	11	0.54	16	6.7	2.6	1	23	415	438	415	438	0.96
3	11	4.5e-05	0.0014	19.5	1.1	3	23	454	475	453	475	0.97
4	11	0.00055	0.017	16.1	1.2	1	23	481	503	481	503	0.98
5	11	0.14	4.2	8.5	12.6	1	23	511	533	511	534	0.96
6	11	0.025	0.78	10.8	0.7	1	23	541	564	541	564	0.94
7	11	0.058	1.8	9.7	4.8	1	23	603	626	603	626	0.97
8	11	0.0064	0.2	12.7	1.1	1	23	629	652	629	652	0.93
9	11	0.0022	0.068	14.2	2.5	2	23	668	690	667	690	0.94
10	11	0.0039	0.12	13.4	1.0	1	21	696	716	696	719	0.95
11	11	0.073	2.2	9.4	2.1	1	21	725	745	725	746	0.92

Sequence Information

Coding Sequence: ATGCCCTGCTGCGTTCCCCGGTGTGTTCCGGAGGCGACCGGTGCCGTCCGCCAGCTGGTTCGCTTTCCGAAGGACTATCGCCTGCGAAGACGGTGGAAGGAGGTGATTAAGCAGGCCACCGGCATCGAACTGGTCGAATCGGCCTGTTTCGAGCCGGGCGACGACGATCCGGCTCCGCTCGAGCTTTGCATTGGCCACATGGCCCGGCCGGAGGCCACCGAGCAGTACCAGGAACCGGCCCGCTTTGTGGACAGctCCGGCGCGCCCCTCACGCTGCTCGGCTGCCGGCTCTGTTTGCGGTTCGTTCCGGCGCACGAAACGCTCGCCACGGACGGGGCCCAGGTCGGTGGCCTCAGCCTGGTGACGTCCGTCCAGCGGCTGTTCGGCATCCGCATCCGGCCGGACGACTTTCAGCGCGCCATGTGCCTCGGCTGTCTGGCCAAGCTGGAGCTGGTGCAGACGGTGCGCAACCAGTACCGGGTCAACGAGTTTGTGTACGAGACGGTGCGGAAGGCGAGCCGGATCCGGCTGGAGGTGGTCGCCGAGGGTGAGTTGCGGGACGGGGAGAAGGGACGGAAGCGGAGCGGACCGGATGGTGGAAGGGGGAAGTTggcgaaaaagaaaaaagttgaGGAAGGGTTGGAGATTGTGGCGAAAGAGGTAGACGTTGGAGCGATGGGAGATGAGTTTGGGGAGGGGTTACTCGAGGAGTTGGGGACGCACGTTGGGCCGATGGCATCGGTGGGAAAGCGCAAGAAGGGAGGAACGAAGGGGAAGACGTTGAAGAAGACGTCAGTTGTGGAAGAGGTGGTTCCGGTTGCTGCAGCAAAGATTCCGAAGGAAGGTGAAGACGGGTTCAAGTCCGATTTGTTTGAAGAGTTGGAGATGGTCGATAATCTTGAAGAATCTTCATTGGGGGATGATCATAATGATGAAGTCGAAGTTGAACCGGTTCCCGTagcagagaaggaaaaaaagccGAAGAAGGATGGATCTGCGAGGAAGAAAACTTCCGAAGAAACTAAGCCGAAGGATAAGGTGAAACTGACGCTGGTACTTTCGACGACCTGCTTCATTTGTAACGGTACATTTGCGAGCAGAGGTGAGTTGGAAATGCACCTGAGCATGCAACACATATCCGAGGATGGTTACACTTGCGCCGAGTGTGACGACGGGGAAAGATTCGTGATGGTTCAAACGTACAACCTGCATCTGAGTCATCACGATCATTCGATTCGCCGATTCAAGTGTAGCTTTTGCACGATGGCTTTCAGCGTGCGAAACAGTCGGCGATTGCACGAAAACAAGAAGCATGGTCAAAGCCACAAAATACGTGAAAGGTATATCTCCGAGTCAGCGTGCGACATCTGTGGCAAGACTTTCGCTCACCAGGGCAACGTATTGCGTCACAAGAAGAAGGAACACGAGCAGTTTAAAGGTCACAAATGCAAAATTTGCGAAAGAGAGCTGACCACGCGAGTAAGTTTGCTGCAGCACATGTTGATCCACAGCGACAAGCGCCAGTGCCCCTACACCTGTTGCCACTGCGAAAAACGGTTCCGGTACATCTCCCAGCTCCACAAGCACAAACTCAAAcatcaccaagccgtgatgaaCGATTATCTGTGCTTTGTATGCCAGTCACGTTTCACCAGCATGGAAGACTACGAGAGTCACATGCGAGAGCTGCACGTTCACCACGACTCCTACGAGTATTCGTGTCGTCTCTGTCCGGAAATTCCGCAAACCGACCAGGAGCTCGAAACCCACATCACCACAGCCCACGCCAGCGCAAAGTACCCCTACTTCAAGTGCAGCTCGTGTCCGAGCAAATTCCACACCAAAAACCAGCTCTTCCAGCACCGCAAGATTGACCACGGCCGGTTCGTGTGTGACCGCTGCGGCAGCTGCTACTCGAGCAAGATGGGCCTGCAGCAGCACATTGACGGCAAACATCTGGGCAAACAGTGGCCGCGCTCGAAGGTCGCCCTAACCCCGTGCAAGTGTCAGGAGTGCGGGCTGGTTTGCTCGAACGTTGCGAACATGAGGCGGCACCAGAAGGCCGTCCATCAGGGCGAGAAGCCGTACGAGTGCGCCTCGTGCGGGGTTAGGTTTGCGACGAAGTCGTCTATGCAGAACCACGTGCGGTGCGTCCACACCGGGGAGGCGCCGTTTGCGTGCAAACACTGTGGTGAGCGCTTCAAGGAGACGTCGATCTTCTCGAGGCACCAGAAGAAGTGCGGTTTGGAAGGGCAGAAGAGTGGCGATGGCGAGTGA
Protein Sequence: MPCCVPRCVPEATGAVRQLVRFPKDYRLRRRWKEVIKQATGIELVESACFEPGDDDPAPLELCIGHMARPEATEQYQEPARFVDSSGAPLTLLGCRLCLRFVPAHETLATDGAQVGGLSLVTSVQRLFGIRIRPDDFQRAMCLGCLAKLELVQTVRNQYRVNEFVYETVRKASRIRLEVVAEGELRDGEKGRKRSGPDGGRGKLAKKKKVEEGLEIVAKEVDVGAMGDEFGEGLLEELGTHVGPMASVGKRKKGGTKGKTLKKTSVVEEVVPVAAAKIPKEGEDGFKSDLFEELEMVDNLEESSLGDDHNDEVEVEPVPVAEKEKKPKKDGSARKKTSEETKPKDKVKLTLVLSTTCFICNGTFASRGELEMHLSMQHISEDGYTCAECDDGERFVMVQTYNLHLSHHDHSIRRFKCSFCTMAFSVRNSRRLHENKKHGQSHKIRERYISESACDICGKTFAHQGNVLRHKKKEHEQFKGHKCKICERELTTRVSLLQHMLIHSDKRQCPYTCCHCEKRFRYISQLHKHKLKHHQAVMNDYLCFVCQSRFTSMEDYESHMRELHVHHDSYEYSCRLCPEIPQTDQELETHITTAHASAKYPYFKCSSCPSKFHTKNQLFQHRKIDHGRFVCDRCGSCYSSKMGLQQHIDGKHLGKQWPRSKVALTPCKCQECGLVCSNVANMRRHQKAVHQGEKPYECASCGVRFATKSSMQNHVRCVHTGEAPFACKHCGERFKETSIFSRHQKKCGLEGQKSGDGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00402174;
90% Identity: iTF_00402174;
80% Identity: -