Cpip001175.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:34646462-34648612[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.03 0.93 10.6 1.1 1 23 234 257 234 257 0.91 2 11 0.26 7.8 7.7 0.2 2 21 272 291 271 292 0.93 3 11 1 32 5.8 4.2 1 23 297 320 297 320 0.95 4 11 0.27 8.2 7.6 0.9 3 20 333 350 332 354 0.88 5 11 0.62 19 6.5 0.2 1 21 367 387 367 388 0.92 6 11 0.00035 0.011 16.7 0.9 1 23 398 420 398 420 0.96 7 11 3.2e-06 0.0001 23.1 2.1 1 23 426 448 426 448 0.98 8 11 8e-05 0.0024 18.7 0.7 1 23 455 477 455 477 0.94 9 11 0.0033 0.1 13.6 0.6 2 23 484 505 483 505 0.97 10 11 0.014 0.43 11.7 2.9 1 23 511 534 511 534 0.95 11 11 0.059 1.8 9.7 1.4 1 23 540 563 540 563 0.95
Sequence Information
- Coding Sequence
- ATGACATCGCGAACCCGGAAACTGGCCCGCCTAGCCGCTGGCCACCAGCGGCCTACCGAAAGTCCCTCCTCGCTGATGTGTCGCGTGTGTGCGCGAAGCAAACCGGAAGCGCAGCTAATGGGACTTTTTGACGAGTTCGTACAGGGCGAAAGCTTGGCCTTCGTACTGTCCCAGGTCGGTGCCGTGGAGATTTACGAGCAAGACCAGATTCCGAACCTGTGCTGCCATCGATGCCACCGGGAGGTGGAATCAGCGTACAGGTTGCGGCTGCTGTGTCAGGACTCGGACCGGAAGTTGAGGGAGCTGTTTGCCGAGCGTGAGGATAAAGTTGAGATTAAGGTGGAAGCGGAGGAGTGTGCGGTGCAGGTTTCGGTTGACCCAATGGGCGTTGAGTACATCACGTGCAAGGCGGACGTTTTCGCGGTTGAGGGAGCGGAGGTGGACGATTCTGGTGAGAAGGCTTTATTGGATCCAGTGCAAACTAAAGTTGAGATTGAAGATGCTTCGGGTGCAAAGGAAGATGAGCCGTCTTCTTCTGAAGAAGGTTCGGACTCGGACCACAATGACGACGATCGCAACGACCTGGACGAAGAGGATGAAGATTCGGAACCACCGAGGAGAAAGAAAAAGACTGCGATCGTTAAGAAGCCAACGAAGACGGAATTCCCAGACGTATTTGAAGAAATCCCAGCCGTTTCGTTCATATGCTGCGGCTGCCGGAATCGTTTCCCAACACAGGAAGATCTGCAAACGCACAGTCAGGCGGTTCACGCGGTCAACAAGCTACCGGCTTCGAAGCTGAAGGGTCGCAAACAGTGTGAAATCTGTTACAAAAATCTACGCGATTCATACGCGTACGAACTGCACAAGCAAATCGGGAAGGTCAACTATCGCTGCAAAACTTGCGGAGACGTTTTCCCCAGTCGGAAGCGCGTCTGCACTCACCACGAGCGCATTCACGGACCACATCCGGTGGTAACGGGCTCGGTGCGGATTTGTTGCGGATGTGCCCAAAAGTTCGACACGCTGGAAGACCTGAAGAAACATTCCGACGAGGCGCATCTCCCGAAGAAGCTGCCACCGGACGAGAAGCGACCTTTCGTTTGTGAGATTTGCTACCACAACTTCCCGACCGAGCTGCGACTGTACGCCCACCAGATCCGGCTCATCAAGGGAAGAAACGAGAAGAAGCATCAGTGCGTACACTGCGGGAAGACCTTCATCAGTGCGGGAGTCCTGCGTGATCACGAAATCTCCCACACCGGCGAAAAGGTTTTCCAGTGTACGGACTGTCCCAAAACGTACACCAACAAGGACGCCTACCGGAAGCACATCTATCGCCACGCGCAACCGCGAGATCGCTACCGCTGCGAGGTCTGCGATCGAACGTTCAAAACGAAGCAAAGTCTGTACGAGCACGGGTTGGCCCACACCGGCGAACGGCCGCTCAAGTGTCCCTACTGTCCGGCCCGGTTCGCTCGCGAAGCCTGCCGGATAAGCCACGTGCGGACGCACACCGGCAAGAAGGACTTTCCCTGTCCGCAGTGTGATAAGCGGTTCCCGTGCAGCTCGGACCGTAACCGGCATCTCAACTATTTCCACAACAAGGAGCGCCCGTTTCCGTGCTTCTTCTGTCCGAACCGGTACCCGCGGAAGGACTACCGCAAGAAGCACATGGAGAATGTGCACGCGGCGGAACTGGCCGCCAATCCGGTGCCGGCGATCGAGCTATCCGGAGGGAATCGCTGGCCGAGCACGGCTCCGGTTGCCGTGCCAGCGGTACCGGCGGTAGAGCCAAGTACTGAAGAGAAATAA
- Protein Sequence
- MTSRTRKLARLAAGHQRPTESPSSLMCRVCARSKPEAQLMGLFDEFVQGESLAFVLSQVGAVEIYEQDQIPNLCCHRCHREVESAYRLRLLCQDSDRKLRELFAEREDKVEIKVEAEECAVQVSVDPMGVEYITCKADVFAVEGAEVDDSGEKALLDPVQTKVEIEDASGAKEDEPSSSEEGSDSDHNDDDRNDLDEEDEDSEPPRRKKKTAIVKKPTKTEFPDVFEEIPAVSFICCGCRNRFPTQEDLQTHSQAVHAVNKLPASKLKGRKQCEICYKNLRDSYAYELHKQIGKVNYRCKTCGDVFPSRKRVCTHHERIHGPHPVVTGSVRICCGCAQKFDTLEDLKKHSDEAHLPKKLPPDEKRPFVCEICYHNFPTELRLYAHQIRLIKGRNEKKHQCVHCGKTFISAGVLRDHEISHTGEKVFQCTDCPKTYTNKDAYRKHIYRHAQPRDRYRCEVCDRTFKTKQSLYEHGLAHTGERPLKCPYCPARFAREACRISHVRTHTGKKDFPCPQCDKRFPCSSDRNRHLNYFHNKERPFPCFFCPNRYPRKDYRKKHMENVHAAELAANPVPAIELSGGNRWPSTAPVAVPAVPAVEPSTEEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402152;
- 90% Identity
- iTF_00402152;
- 80% Identity
- -