Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:150419577-150428899[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.12 3.7 8.7 0.7 1 23 208 231 208 231 0.95

2 11 0.7 21 6.3 0.2 1 23 237 260 237 260 0.91

3 11 0.0006 0.018 16.0 3.5 1 23 282 304 282 304 0.98

4 11 2.5e-05 0.00075 20.3 2.1 1 23 311 333 311 333 0.99

5 11 1.7 51 5.1 0.3 2 23 349 371 348 371 0.95

6 11 0.0012 0.037 15.0 0.2 1 23 395 417 395 417 0.98

7 11 0.089 2.7 9.1 0.2 1 23 482 505 482 505 0.94

8 11 0.00064 0.02 15.9 3.4 2 23 582 604 582 604 0.97

9 11 0.0044 0.13 13.2 3.1 1 23 610 632 610 632 0.97

10 11 0.15 4.5 8.4 1.5 1 23 647 669 647 669 0.98

11 11 0.23 6.9 7.8 0.1 1 23 693 716 693 716 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.12	3.7	8.7	0.7	1	23	208	231	208	231	0.95
2	11	0.7	21	6.3	0.2	1	23	237	260	237	260	0.91
3	11	0.0006	0.018	16.0	3.5	1	23	282	304	282	304	0.98
4	11	2.5e-05	0.00075	20.3	2.1	1	23	311	333	311	333	0.99
5	11	1.7	51	5.1	0.3	2	23	349	371	348	371	0.95
6	11	0.0012	0.037	15.0	0.2	1	23	395	417	395	417	0.98
7	11	0.089	2.7	9.1	0.2	1	23	482	505	482	505	0.94
8	11	0.00064	0.02	15.9	3.4	2	23	582	604	582	604	0.97
9	11	0.0044	0.13	13.2	3.1	1	23	610	632	610	632	0.97
10	11	0.15	4.5	8.4	1.5	1	23	647	669	647	669	0.98
11	11	0.23	6.9	7.8	0.1	1	23	693	716	693	716	0.91

Sequence Information

Coding Sequence: ATGGAGACCCGCTCAGCGAACGCAGGTTCCTCCGTGGTCGCCGCCACGGGACCAAACATTTGCCGAATCTGCCTAACCAACGGCGGAACCGGAAGACAAGGGCAAGTACACGGTCTGGAATCGATCTTCAGCACCGTGGTGGACTACGAGTGCAAAAGTTTGTACGGGATCCTGCTGGAGGTTTGCGCCCCACTCGGTACCCGGGAGATGCTCAACGGGATGCCGGAACGGATCTGCCGGGGTTGCAAGTGGCGCCTGCTGACGGCTTACGAGCTGTACGAGACCTGCCTGCGGAGTGACGAAAAGATGCGCGAGGTTAGCGCACGCGAGATCCAGCTCAAGCAGGCCATGCAAGTGGAGAAAAAGGAAGAACAGCAGGTCGTCATCAAGCAGGAACTGCCCGACGGGGACGAGCAGCCAAGTTTCCAGCACACAGAAACCGACACAACCATGGAGGACTACAGCGACGCGTCCGCTCTGCTGCTCGAGAGTCAGTTCTACCCGGATGCGGAAAGTTCGCTGGTCGCTCCTTCGCCGAACCTTCTGGAAGAAATGGCCCCGGCCGTGGACCTCGAGGAAACGTTTTTCGCCGAACATTACCAACCCGGCGAGAACGGGAACCACAAGTGTGGCATTTGCGAGGCGGAATTCCAGTACAAGAGTGCCGCCCGGACGCACATTCTCCAGAAGCACGACCCGTCGAAACCGTTCAAGTGCGACGTGTGTTTCATCTCGCTGACGACGGAACTGCGTCTGATTCGCCACAAGGCCCTGGGGCACGGCGTCGGAGTGATCAAATGTGACCAGAGTGCGGAGGACAAGGACGAGTCGGGCGCCACAGTCTACACGTGCAAGATCTGCTCGAAAACGTTCACCTCGATGGTCCGCTTCAAGCGCCACAAGAACGTCCACGTCGCGTACAACAGGCCGTTCAAGTGCGACGTCTGTCTGTACCGGTTCTCAACCCGATCACAGCTCCAACAACACGCCAAAACGCACCAGGAAAAGCCCGAAGGCACCGACCAACCCGACCAGGACCAGTGGCCGTGCGAGTTCTGCGAGGAAAAGCTGCCCAACAAACGTGCCCAGACGATGCACGTTCGGCGGTTCCACCCGGAGCAAACCCTCGCCGTTGAATCTCCCGCCGGAACCGCCACTTCCACCGGCAGCGACAAAAACGAGTACAAATGCATCATCTGCTCGGAGGCGTTCGCCCGCGAAAGTGTCCTCAACACGCACATGAAGATGCACGAGCTGATCGCGCTCGAAAAGGAAAAGGAACAACGGCAGCAACAGCTGGAAGCGATGCTCGCCAAGCgggaacagcagcagcagcagaattcCGCGTTGGACTCGAGTACGACCGCGGTCGGCGCCATCAGCTTCAACGAAAGTCTGACGACGATGGCCGGTGGGAAGAAACGTAGCGACGCCGAtatgctgtttgtgtgcatcgTCTGCGAGCAGGAGTTTGAGGAGCGGGATATGCTGCTGAAGCACCAGAAAAGGCTGCACAAGGAGCTGGAGCTGAACATTGTGTCGAGCGGGGCCGCGCAGGAACAGCAGGATGGAGCGGCGGAGGAAGCCCCGGTAGACGACTTGGAAGACAGCGCACGTACCAAAGATCCGGACCAAAACACGGACGAGTCGATGGTGGTCGATCTGGACCCGATCGAGTTCCTTGCGACGGAAAACGGTCAAACGAAGCCGCGTGGCGGCGGTGGCGGTCCTCCGTCCCTGCCCAAATGTGAACTCTGCGGCAAAACCTTCATGTACAACTGCCTCCTGCAAACCCACATCAAAAAGAGTCACAGCGAATCGAAGCCGTTCGAGTGCAAAACGTGCCACATGCGCTTCGGCTACCGAGGCACCCTCCAGAAGCACGAACTCTCCCACTCGGCGCAAAACGTCCGCGCCGGCGGTCACGGTTCCATCATGTACAAGTGCAAACTCTGCGGGGCCAAGTTCCTCGAGCAGAAACTGCTAACCTTCCACCTGAGGACCCACCGCAGCGCACCTCCCACTCCAACCCAAAAAGCGGACCCGGAACCACCCATCACCAAAAAGGTGGAAATCTTCGCGTGCGGCTTTTGTCCGCAAATCTTCAACGCCAAGGACGAGTTCGATCGGCACCTGGTCAATGTCCACCGACAGACGCCGGCGCCACCCCCGTTGAAACCGGCTCCCGGAATCAACCGGAACTCGCCAACGCCCGCGGCAGCGCGCAGGACTGCCGAACGGCGGACGCCCATGAACGAGAAAGAAACGTTTTTCGACAGTTTGTCGATCGTCAAGCTGGAACATCCGTTGGGAACGGTTAAGCTAGATTAG
Protein Sequence: METRSANAGSSVVAATGPNICRICLTNGGTGRQGQVHGLESIFSTVVDYECKSLYGILLEVCAPLGTREMLNGMPERICRGCKWRLLTAYELYETCLRSDEKMREVSAREIQLKQAMQVEKKEEQQVVIKQELPDGDEQPSFQHTETDTTMEDYSDASALLLESQFYPDAESSLVAPSPNLLEEMAPAVDLEETFFAEHYQPGENGNHKCGICEAEFQYKSAARTHILQKHDPSKPFKCDVCFISLTTELRLIRHKALGHGVGVIKCDQSAEDKDESGATVYTCKICSKTFTSMVRFKRHKNVHVAYNRPFKCDVCLYRFSTRSQLQQHAKTHQEKPEGTDQPDQDQWPCEFCEEKLPNKRAQTMHVRRFHPEQTLAVESPAGTATSTGSDKNEYKCIICSEAFARESVLNTHMKMHELIALEKEKEQRQQQLEAMLAKREQQQQQNSALDSSTTAVGAISFNESLTTMAGGKKRSDADMLFVCIVCEQEFEERDMLLKHQKRLHKELELNIVSSGAAQEQQDGAAEEAPVDDLEDSARTKDPDQNTDESMVVDLDPIEFLATENGQTKPRGGGGGPPSLPKCELCGKTFMYNCLLQTHIKKSHSESKPFECKTCHMRFGYRGTLQKHELSHSAQNVRAGGHGSIMYKCKLCGAKFLEQKLLTFHLRTHRSAPPTPTQKADPEPPITKKVEIFACGFCPQIFNAKDEFDRHLVNVHRQTPAPPPLKPAPGINRNSPTPAAARRTAERRTPMNEKETFFDSLSIVKLEHPLGTVKLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00402132;
90% Identity: iTF_00402132;
80% Identity: -