Cpip005370.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:14648516-14650703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 5.9 8.1 0.2 1 20 189 208 189 210 0.94 2 13 7 2.1e+02 3.2 0.7 1 20 217 236 217 238 0.92 3 13 0.089 2.7 9.1 0.2 2 23 265 287 264 287 0.91 4 13 0.002 0.06 14.3 0.2 1 20 297 316 297 318 0.95 5 13 5.6 1.7e+02 3.5 0.3 1 23 325 350 325 350 0.94 6 13 0.019 0.57 11.3 0.3 2 21 404 423 403 424 0.94 7 13 0.045 1.4 10.0 0.1 1 21 429 449 429 450 0.93 8 13 1.7e-06 5.2e-05 24.0 1.1 1 23 458 480 458 480 0.99 9 13 0.0043 0.13 13.3 0.1 1 23 486 509 486 509 0.98 10 13 0.00081 0.025 15.5 2.0 1 23 515 537 515 537 0.98 11 13 1.2 36 5.6 3.5 1 23 543 566 543 566 0.89 12 13 0.0068 0.21 12.6 1.1 1 23 572 594 572 594 0.98 13 13 0.0014 0.042 14.8 0.7 1 23 600 623 600 623 0.98
Sequence Information
- Coding Sequence
- ATGTCCACCCGTAGCGAGGAGGACGGTACCCATTCCGATCGGCCCGTAAAGTGCGACAAGGACGCCATTTGCCGAGTCTGCATGACCGAAGACCCCCAATCCGAGTTGATTTCGTTGTTCCAGATCAACGGAACAGGGGACGAGGTAATCGCCAACATGATTATCGACTGCTGCGAAGTTATGGTTTCGGACGACGATAACATGCCGCAGAACATCTGTGCCGACTGTTTGGACCGGTTGAATCAGGCCTACGAACTGCGGAAGCAGTGCAAGCGGTCGGACCAGGTTTTACGAGGTTTGGCTGTCGATGAAACTGTTGAAGACGTTCCAGACGATGCGTCTGTAATGGAGCTGGAGGTTGAATATCTAGACGAAGAAGATGAATCTGAAGAGACGAGTCCAAATCTCAAATTCGTGGAGTCTGTTGAGGACTTCCCTTCGCACAGGGTCTACCGCCTGCTGGGAGAACAGTGCTGCAACTGTTTCGAGCTATTCCAGGACGTCGATGCGTTGATGGCCCATTGCGATCAGGAGCACGGCCGGGGCACCCCCGGCAAGAGTCACTTCCAGTGTGACGTTTGTCGCGATCCGTTTGATAGTCACGCCGCGTTGACCAAGCACAAGGAGGTCGCCGCGGAAATGGTCCTGTACCACTGCAAACGCTGCCAGGTTGATCTTCGGAGTGAGCGTGAATTTCTGAAGCACGTCGTAACTTCGGAGCGGGACCACGAGGACGCCGTTGAGACGCTCGACGTCGCGGGCAAGTTTGAACAGGTCTTGATAGTGGGGATGCGCTGCTGCGGTTGCGATGAAATCTACGACGGTCAGGTTGAGTTGGAGAGACATCGCGAGGACGCGCACCGATCGAGTCGGGTTGAGGGAAGTGGGTTCGAGTGCGATGGATGCTACCGGAGATTCAAGATATCGTCCCAACTGGCAAAGCATAGAGCGGAGGCTAAGTCCAAGCAATGGTTTGTTTGCAGCGCTGAAAGCTGCCAGTTCAAAACGGTCTCCCGAAAGAGCATGATCGGTCACATGTTAAGGGATCATGAATCTAGTTCGAAAAAGCCGGACAGCGGCTATGCGTGCTGCGTTCTTCGTTGCTTCGAGACCTTCCAGACGTACGAAGATCTGGAATTTCACGCCGACGAGGCTCACGCTCTGGTACGGCTCCAGCACGAGCAGGATCGCAATGCAGAACACAACGTAACGTGCGACATCTGCCACCGAGGCTTCCCGGACGAGCGAACCTACTCGCGCCATCGGAACGACAAAACCCGTAAGCACATTTGTAAGACCTGCGGCGTTCAGTACGCGTTCCGAGCGAACCTGATTGAGCACGAACGCAGCAATTGTGGTCAAGTGGCCCGGTACAAGTGTAGCCAGTGTGACAAAGCGTACAAGACACCGGGTGGCCTCAAAAACCACCGAAAAACCCACAAAGACCAACGATCGTTCGTTTGTGAACTCTGCGGTCGTGCCTTCCTCCGCAAGGGCATCCTTAAAGACCACATGAACACGGTGCACTCGACCGTCCGCGCGTTCCAGTGTTCCCTCTGCCCAAAGTCCTTCACCAGTCGGAACATTTACCGTTCGCATCAGCTGACCCACACCAAGGAAAAGCCCTTCCAGTGCCGGCACTGCGACAAGCGGTATCTCAAGAGCAGCGATCGGAAGATGCACGAGAACCAGGTCCACCTGGGGAATCGACCCTTCCGCTGCCAATACTGTCCGGCCACGTTTACCCGGGATCGCGAGCGACGACTGCACGAACGCGTTCACACCAAGGCCAAGCTGTACACGTGCGATGAGTGTGGCGAGGGTTACAATAAGTTTGCGGCATTCAAGGACCATCGGCGGAAGCAACACGGCCTGGACACGATGCGGGATCTCGGGCCGGCGGCGATGGCAGCCGTGCAGGGACTGGATGATGAAGAGCAGTTTGAGTTCTTGAGTGTTGACCCTGAGGAGGAAGTGGATTGTGACGATGagtga
- Protein Sequence
- MSTRSEEDGTHSDRPVKCDKDAICRVCMTEDPQSELISLFQINGTGDEVIANMIIDCCEVMVSDDDNMPQNICADCLDRLNQAYELRKQCKRSDQVLRGLAVDETVEDVPDDASVMELEVEYLDEEDESEETSPNLKFVESVEDFPSHRVYRLLGEQCCNCFELFQDVDALMAHCDQEHGRGTPGKSHFQCDVCRDPFDSHAALTKHKEVAAEMVLYHCKRCQVDLRSEREFLKHVVTSERDHEDAVETLDVAGKFEQVLIVGMRCCGCDEIYDGQVELERHREDAHRSSRVEGSGFECDGCYRRFKISSQLAKHRAEAKSKQWFVCSAESCQFKTVSRKSMIGHMLRDHESSSKKPDSGYACCVLRCFETFQTYEDLEFHADEAHALVRLQHEQDRNAEHNVTCDICHRGFPDERTYSRHRNDKTRKHICKTCGVQYAFRANLIEHERSNCGQVARYKCSQCDKAYKTPGGLKNHRKTHKDQRSFVCELCGRAFLRKGILKDHMNTVHSTVRAFQCSLCPKSFTSRNIYRSHQLTHTKEKPFQCRHCDKRYLKSSDRKMHENQVHLGNRPFRCQYCPATFTRDRERRLHERVHTKAKLYTCDECGEGYNKFAAFKDHRRKQHGLDTMRDLGPAAMAAVQGLDDEEQFEFLSVDPEEEVDCDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00401042;
- 90% Identity
- iTF_00401042;
- 80% Identity
- -