Cpip001176.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:34648947-34651068[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00078 0.024 15.6 0.9 1 23 231 254 231 254 0.91 2 11 3.1 95 4.3 0.3 2 21 269 288 268 289 0.92 3 11 0.023 0.7 11.0 4.3 1 23 294 317 294 317 0.97 4 11 0.002 0.062 14.3 0.3 3 23 330 351 329 351 0.94 5 11 0.18 5.4 8.2 0.5 1 21 364 384 364 385 0.93 6 11 0.00026 0.0079 17.1 1.2 1 23 394 416 394 416 0.96 7 11 0.00012 0.0035 18.2 2.9 1 23 422 444 422 444 0.95 8 11 8.3e-07 2.6e-05 24.9 3.3 1 23 451 473 451 473 0.99 9 11 0.0045 0.14 13.2 1.1 3 23 481 501 479 501 0.98 10 11 0.25 7.6 7.7 3.2 1 23 507 530 507 530 0.91 11 11 0.031 0.95 10.6 1.1 1 23 536 559 536 559 0.96
Sequence Information
- Coding Sequence
- ATGTCGACAACGCGGCGATCCGGCCGCGGTCGTAAACGGGAACCACCCGAACCGACCGTACCGTGCCGGGTTTGTATGGTTGGCAAACCGCAAGATCAGCTGGTACAGCTCTTTGACCGCAAAGTGCAGGACGGCGAAACGCTAGCGCACGTCCTGTCCCTGGTTGGCGCTGTAGCGGAACCACAGGAAGCAGACAAGATCTCGAAGCTGTGCTGCCGGCGGTGCGTTCGCGAGCTGGAGACAGCGTACCAGCTGCGAGCGCTTTGCCAGGAGTCGGACCGGAAGCTACGCGAGCTGTACGCTGGTGAAGACGAGCTTGTGATCAAGGTGGAACTCGACGGTGAAGCGGTGTATCCGGTCGATGTGGCCTGTAAAACCGAGGTGTTTACTCTGGATGGTCCAGCTCATGTGGAGAATTCCGAATTGGATCTGGCATATCCAGAAATTGAACTAACAGTAGAGGAACCTTCTCAACCCAACATTGCTCCGACACCTGAGACGAAAGCACCTGACTCGGAGACCGACAATGGCAACCTCGACGACGATAGTGATTCTGACTACCAGGAAGAAGTTCCAAATGCTCCACTGGACGAGAAGGAAGACTCGAGCGACACTAAGGACAGTGTTTCATCAGCCAAAAAGGCAAAACCAGAATTCCCCGACGTGTTTGACGAGGTGCCGGCCATCTCGTTCATCTGCTGTGGGTGCAGAAAGCGGTTCCCGACGCAAGAGGAACTTCAAGCACACAGTCAAGCAGAACACGCCTCGAACCAACTGTCCGCGAGCAAGCTGAAAAGCCGGAAGCAATGCGAAATTTGCTACAAGATAATGCGTGACTTGCACGCCTTCGAGCTGCACAGACAAATCGGGAAGCTCAACTACCGGTGCAAAACGTGCGGAGAAGTGTTCATCAGTCGGACACGGGTCTGCACGCATTCGCGGAAGTTCCACGGACCAAACCCAGTGGTATCCGGATCGATTCAAGCCTGCTGTGGCTGCGGACAAAGCTTCGACAGTCCAGAAACCCTGATGAACCACTCGGCAACGGTTCATCAGCCCAGCAAACCCAATCCGGACGAGAAACGGCCGTTTGTGTGTGAGATTTGCTTCCACAACTTCCCGACAAAGCTACGATTGTACGCCCACCAGATTCGCTTTCTCAAGGGCAAATCCAAAGCCCACCAATGCGTTCACTGTGGCAAAACGTTCGCCAGTCCTGGAGTTCTGCGAGATCACGAAACGTCCCACACCGGCCTCAAGATGTTCCAATGCACGGAATGTCCCCGCACGTACACCAACAAAGACGCCTTCCGGAAGCACAAATACCAACACCTACAACCGGAAGATCGATACAAGTGCAGCATTTGCAACAAGTGCTTCAAACGGAAACCCACTCTCAACGAGCACATGCTCGTCCACAGCGGAGAACGTCCCTTCGGCTGCCCGTACTGTCCGGCCAAGTTTGCCCGGCGGGGTTGCCGCTTGAGCCACATCCGTACGCACACCGGCAAGAAAGACTTCCCCTGTCCCCAGTGTGATAAACGATTCCCGTGTACGACGGACCGCAATCGACATCTGAACTACTTTCACAACAAGGCGCGGCCTTTCCCGTGCTTCTTCTGTCCGAACCGGTACCCGAGGAAGGACTACCGGCGCAAGCACATGGAGAGTGCGCACGCGGCGGAGATGCTCGCAAATCCGGTGCCGGCGATCGAGCTGTCCGGTGGGAATCGGTGGACGAATGAGGCCGCGGCGGAGCGTGGGTGA
- Protein Sequence
- MSTTRRSGRGRKREPPEPTVPCRVCMVGKPQDQLVQLFDRKVQDGETLAHVLSLVGAVAEPQEADKISKLCCRRCVRELETAYQLRALCQESDRKLRELYAGEDELVIKVELDGEAVYPVDVACKTEVFTLDGPAHVENSELDLAYPEIELTVEEPSQPNIAPTPETKAPDSETDNGNLDDDSDSDYQEEVPNAPLDEKEDSSDTKDSVSSAKKAKPEFPDVFDEVPAISFICCGCRKRFPTQEELQAHSQAEHASNQLSASKLKSRKQCEICYKIMRDLHAFELHRQIGKLNYRCKTCGEVFISRTRVCTHSRKFHGPNPVVSGSIQACCGCGQSFDSPETLMNHSATVHQPSKPNPDEKRPFVCEICFHNFPTKLRLYAHQIRFLKGKSKAHQCVHCGKTFASPGVLRDHETSHTGLKMFQCTECPRTYTNKDAFRKHKYQHLQPEDRYKCSICNKCFKRKPTLNEHMLVHSGERPFGCPYCPAKFARRGCRLSHIRTHTGKKDFPCPQCDKRFPCTTDRNRHLNYFHNKARPFPCFFCPNRYPRKDYRRKHMESAHAAEMLANPVPAIELSGGNRWTNEAAAERG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -