Cpip001872.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:57428116-57430704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 8.8 7.5 1.1 6 23 258 275 258 275 0.98 2 12 0.0029 0.09 13.8 2.3 3 23 288 309 287 309 0.95 3 12 1.6e-05 0.00048 20.9 0.3 1 23 317 339 317 339 0.98 4 12 0.0017 0.051 14.6 2.8 1 23 347 369 347 370 0.94 5 12 2.8 85 4.4 0.3 2 23 414 436 413 436 0.93 6 12 0.00016 0.0049 17.8 2.6 1 20 469 488 469 488 0.96 7 12 0.00037 0.011 16.6 0.1 1 23 500 522 500 522 0.98 8 12 0.018 0.55 11.3 0.4 1 23 530 553 530 553 0.96 9 12 0.00033 0.01 16.8 0.2 2 23 560 581 559 581 0.97 10 12 0.48 15 6.8 1.9 2 23 621 643 621 643 0.95 11 12 0.0023 0.071 14.1 1.6 1 23 649 671 649 671 0.95 12 12 0.00027 0.0083 17.0 3.1 1 23 677 700 677 700 0.98
Sequence Information
- Coding Sequence
- ATGTCCACGTCGGAGGCGCTGAAGGGCTGCCTGACGTGCTTCCGCCAGACGGATAACTTTCTCCGGATCgccgaaaacgacgacgacgcgggCGACGAAAATGTCGAGGCGGTGTTCGAAACGCACTTTTGGTTTACCAAAGATGAGTACCAAGATCGGATTGTTTGCACGAGCTGCTGGGAAAAGATTGACgattttcacaagttttactGCGAGGTGAAGAAGGTGCACTATCCGAGGATTAAGAAGGAGCTGGAAGGGGTTCCCGTGAAGGAGGGTGGTGACGAAAAGGGGGAGGATGAGGGTGGCAGCGATGGGGAAAAGGTGCCGTACGATGAGAGTTTCCTGTCCACCGAGGTGTCGTTCAAAGAGGAACCGTCTGCGGCGACGGAGGAGAAAGCGGATCCGGATTTCTGGACACTGGACGCGCTGCCACCAATGGACGGAGTTTTGTCCAATAACGACGACGAAAGCGATGACAACAAGGATGAAGCCAAGAACAGTGACAGCGATTCGGAGAGTAGTTCCGGAAGCGATTATAAGATAAAACGTACCAGTTCGGACACTACCGACAGCGAGGAGGAAATTCCGTTGGCGAAGCGAATTACGAAGAAACGGAAGCGAAGAAGGAGGAAGTACGCTCGGGATGATCTGGATTACACTTGCTGTGTTTGTGCGGACGCAGGAGAGGAGATCGAACCGTTCGCGACTTGGTACAAGATGAACTTGCATTTCAAGCAAAATCACGGCCTTACCGGATTCATGTTTTGCTGCAATCGACGGTTCTGCACGAAACCGTTGTACGTGAAGCATCTGGAAAGTCACGACGTTTCGACAACGGTCAGAACCGATCAGAAGCACTGTCTGGAGTGCAAGTGCTCGTTCAAGGACGAAAGTGGCCTAGCTAGGCACATGGTCATGGTTCACACGCCGGAGGAGCTGAAACAGTTCAAGTGTGACCGCTGCTCGAAGGCGTTCGCCGATCAGGATCTGCTCAACAGTCACATCAACTGGCACGACGAGGTGGAAAAGAGAAATCATCATTGCGCAATTTGCAACCGCTACTTTACAGGTGCTGGCAACCTGCAAACCCACATTATGGCGCATCATTCCACGGCGGCAGAGGCCGCTGCCCAGGCCGAGCCCAAACCGGTTgagaaaaagtttgaaaaacgaAAACGGGGCACGCCCGACGATGTCGCCAAGCAAGACGATCTTATCAAACAATTTGTCCAACTAAACTGTTCCAGATGTGACTTTGTgggtgaaaattttaaagatcttCAATTGCACGCAAAAAATCTCCACCAACTGCCCACCTACTCGGTAGTTTGCTGCGAGCGACGCTTCAGCAAGCGGTTCCGCCTGTACGAGCACTGCCTCAAGCACCTCAATCCGAACCACTTCCGGTGTGAACTGTGCGATAAAACCTTCACGGACAGTCACGGGTTGCAGCATCATCGCTGGTTCATTCACACGCCCGTTTCGGAGCGACCCTTCAAGTGTGACGTGTGCGGGGACGCCTTCGTCAAGGAATATCTCCTAAAAGCCCACATGGATCGCCATCTGGACAAGGAACGCAAGACGCACACGTGCGAAATCTGTAGTGTTTCGTACACGGCGTTGCCACAGTTGAAAATACACCAACAGAACGTCCACGGCGCCGTCAGCGACTGGGTTTGCGATGTTTGCGCCAAAGGATTTGCCCACCGGGCACTGCTCGAACGGCATCGCCTAACCCACACCGAGGAAGGCCTCGCCAGCCTGAAGCAGCAGTgcgaaaaatgtcaaaaatggatgCCCAACCGAACGTCCTACCTGCGCCATCGGCGACTCTGCGGCAACAACACCGGACCGGCCAAGTGCGACCAGTGTGAGCACGTTTCCGTCAATCCGCACGCCCTGTCGGTGCACAAGAAGCTGAACCACTCGGATCGGCCGAAATATACGTGCCGCTATTGCGGCAAGGAGTTTAAAAAGCAGCTCAGACTGAAGGAACACGAAGCGAACCACGCCGGAATCGTGCTGTACAAGTGTCCGTACTGCCCACGCGAGTGCAACTCCAGCTCGAATATGTACACCCACAAGAAGACGGCCCACCCGGAAAAGTGGGCAGAGGCGGTGGCGGCGCGATTTGCGAAGTAA
- Protein Sequence
- MSTSEALKGCLTCFRQTDNFLRIAENDDDAGDENVEAVFETHFWFTKDEYQDRIVCTSCWEKIDDFHKFYCEVKKVHYPRIKKELEGVPVKEGGDEKGEDEGGSDGEKVPYDESFLSTEVSFKEEPSAATEEKADPDFWTLDALPPMDGVLSNNDDESDDNKDEAKNSDSDSESSSGSDYKIKRTSSDTTDSEEEIPLAKRITKKRKRRRRKYARDDLDYTCCVCADAGEEIEPFATWYKMNLHFKQNHGLTGFMFCCNRRFCTKPLYVKHLESHDVSTTVRTDQKHCLECKCSFKDESGLARHMVMVHTPEELKQFKCDRCSKAFADQDLLNSHINWHDEVEKRNHHCAICNRYFTGAGNLQTHIMAHHSTAAEAAAQAEPKPVEKKFEKRKRGTPDDVAKQDDLIKQFVQLNCSRCDFVGENFKDLQLHAKNLHQLPTYSVVCCERRFSKRFRLYEHCLKHLNPNHFRCELCDKTFTDSHGLQHHRWFIHTPVSERPFKCDVCGDAFVKEYLLKAHMDRHLDKERKTHTCEICSVSYTALPQLKIHQQNVHGAVSDWVCDVCAKGFAHRALLERHRLTHTEEGLASLKQQCEKCQKWMPNRTSYLRHRRLCGNNTGPAKCDQCEHVSVNPHALSVHKKLNHSDRPKYTCRYCGKEFKKQLRLKEHEANHAGIVLYKCPYCPRECNSSSNMYTHKKTAHPEKWAEAVAARFAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00402077;
- 90% Identity
- iTF_00402077;
- 80% Identity
- -