Cpip018398.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NW:101889-104440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 43 5.4 0.7 2 23 152 174 151 174 0.93 2 13 0.028 0.86 10.7 3.6 1 21 187 207 187 208 0.96 3 13 0.05 1.5 9.9 2.9 1 23 226 249 226 249 0.94 4 13 4.9 1.5e+02 3.7 2.9 1 20 261 280 261 282 0.90 5 13 0.066 2 9.5 2.0 2 23 299 321 298 321 0.94 6 13 0.035 1.1 10.4 0.6 1 20 335 354 335 356 0.95 7 13 6.9e-05 0.0021 18.9 1.3 1 23 363 386 363 386 0.97 8 13 7.5e-06 0.00023 21.9 2.5 1 23 397 419 397 419 0.97 9 13 2.8e-05 0.00087 20.1 1.1 1 23 425 447 425 447 0.98 10 13 1.1e-05 0.00035 21.4 1.0 1 23 458 480 458 480 0.98 11 13 0.00081 0.025 15.5 4.4 1 23 486 508 486 508 0.98 12 13 0.014 0.43 11.6 0.4 1 23 514 536 514 536 0.98 13 13 9.4e-05 0.0029 18.5 3.3 2 23 542 563 542 563 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGCCGGAAGCTCTGGATATGGCCAGGGCGGCGAGCTTGTGTCGGGTTTGTCTAAAGGACGCCGGGGAGGACATGGTTCCCGTGAGTTACGAAGTGGACGGGATTTCGATCGTGGAGTTGATTGGTGCGTGCAGCGGTGTTGAGATTACGGAAGACGATGAGGACGCCTCACTTCCCACGAACTGTTGCGAACGCTGTGTGGAGGCCTTGTACGTTGCCCACAGCATAGCGGAGCAGTGTCGGGAATCGGACAGGAAGTTGCGTTCGTTGCTAGATTCAGCCAAAGATCGTAGGGCGGAAGAGGAGTCCGAGGACCTTTCTGATTGTAGCCAAGACGAATCGGAAGAATCTGAACATGATTCGGGTGAGGAAAATGCGCAAGATGTAGAACTTGAAGAAAATCTGCGAGGACAAGAGGGACCGGGTAATTTAGAGGAACCGAATACCACGTGTTGCGCCtgtcggaccgattttgaaagtGAAGAAGCTTTGAGCGACCACATAAAGCAAGTGCACGAGCCTGAACGTACAAACGACGCGAGTAAAAAGCCGTTTCAGTGCGATACGTGCTTCCGGAGGTACTTTAAGAAAACCTCTCTGAATCGGCACAAACGTTTGGGCAGTGTGGGAACGGCAATACGAGTGGTGAAGCAGGAGGAACCTGTGGATCATCGATGTTGTGGGTGTAGGAAGGATTTTGGCACCGAGGAAGAACTGCGTCAGCATTCGCTATCTGTTCATGGACCCAGCAGGACTAACGACGAAACAAGACCGTTTGAATGCGAACTCTGTTTCAAGCGGTACTCGTGTAAGAACTCGTTGGGGAGGCATTTTAAGGCAAGGTTACTCGAAAGCGTGCCACGAACGGTGCGGAAACTTGGTGCGAATCAATGTTGCGGATGTAGGGTCAAATTTGCGAATAAGGAACAACTTGTGCAACATTCGAAGCAGGTTCACGAACCAGATCGGAGTGATATCCTAGGGGAGCTGAAGCCTTTCGAGTGTGAGATTTGTTTTAGCAGATATTCGACTAGAGAGGCTTTCAAGCGTCATAAATCCGGATTTCGGGCGGAACAACTGTACCGCTGTGAACAGTGTGATAAATCATTCGTGAAACGAGTAATGTTACGGATTCATGAACAAAAGTTTCATGACGGTGTCCAAAACGAGGTCATCGGAGCATACCAATGCACTAGATGTGGCAAAACGTTCATGCATCCTAGTTCTTTAACCAATCACGAAAAGTGGCACAATCAGAGTCGAGATTTCGAATGTTCGATATGTCAGAAGATGTTCCTTAGCAAGGGAAATTTGCAAACGCACATGAAACTGCACTCGGAACCGGCGCACCAGCGGAAAGCTCAGTACGAATGTCCCATTTGCCGATGCAGCTTCAAAACCCCGAATTATCTACAGATCCACGCGCGAGTTCATACCGGTGAAAAGCCACACCGTTGCACGTATTGCTCGAAGCAGTTTGCTCACATGCCCGGTTTGAAGCGCCATCTGTTGACGCATACAGACGAGAAACAATTCTCCTGCCGGTACTGTGCACGAGAGTTCTCGGCGCGTCCAAACTTACTAATCCACGAGAAAAGCCACGGAACGGAGCGCGAAAAGTGTGACATTTGCGGGAAGGAATTTGTCCACGTGCGGTACTTGCGCAAGCACCGGAAGCGGcactttaaacattaa
- Protein Sequence
- MDLPEALDMARAASLCRVCLKDAGEDMVPVSYEVDGISIVELIGACSGVEITEDDEDASLPTNCCERCVEALYVAHSIAEQCRESDRKLRSLLDSAKDRRAEEESEDLSDCSQDESEESEHDSGEENAQDVELEENLRGQEGPGNLEEPNTTCCACRTDFESEEALSDHIKQVHEPERTNDASKKPFQCDTCFRRYFKKTSLNRHKRLGSVGTAIRVVKQEEPVDHRCCGCRKDFGTEEELRQHSLSVHGPSRTNDETRPFECELCFKRYSCKNSLGRHFKARLLESVPRTVRKLGANQCCGCRVKFANKEQLVQHSKQVHEPDRSDILGELKPFECEICFSRYSTREAFKRHKSGFRAEQLYRCEQCDKSFVKRVMLRIHEQKFHDGVQNEVIGAYQCTRCGKTFMHPSSLTNHEKWHNQSRDFECSICQKMFLSKGNLQTHMKLHSEPAHQRKAQYECPICRCSFKTPNYLQIHARVHTGEKPHRCTYCSKQFAHMPGLKRHLLTHTDEKQFSCRYCAREFSARPNLLIHEKSHGTEREKCDICGKEFVHVRYLRKHRKRHFKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -