Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:114660127-114663694[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0023 0.069 14.1 0.9 1 23 269 292 269 292 0.98

2 17 0.028 0.86 10.7 2.5 1 23 299 321 299 321 0.97

3 17 1.6 50 5.1 0.8 1 23 327 350 327 350 0.81

4 17 0.011 0.34 12.0 0.5 1 23 362 385 362 385 0.96

5 17 0.0023 0.07 14.1 5.0 1 23 448 471 448 471 0.95

6 17 0.03 0.93 10.6 0.6 2 23 478 500 477 500 0.96

7 17 0.016 0.49 11.5 2.4 1 23 513 536 513 536 0.96

8 17 0.042 1.3 10.1 1.7 1 23 555 578 555 578 0.90

9 17 0.0016 0.05 14.6 5.2 1 23 585 607 585 607 0.98

10 17 0.024 0.73 10.9 1.4 1 23 613 638 613 638 0.91

11 17 1.2e-05 0.00036 21.3 1.4 2 23 698 719 697 719 0.97

12 17 0.0014 0.043 14.8 1.7 1 23 725 748 725 748 0.95

13 17 0.0058 0.18 12.9 1.5 1 23 760 783 760 783 0.96

14 17 0.14 4.4 8.5 1.4 1 23 811 834 811 834 0.95

15 17 0.0041 0.12 13.3 3.1 1 23 841 863 841 863 0.99

16 17 0.00051 0.016 16.2 1.4 1 23 869 892 869 892 0.98

17 17 0.022 0.67 11.0 0.7 1 23 906 929 906 929 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0023	0.069	14.1	0.9	1	23	269	292	269	292	0.98
2	17	0.028	0.86	10.7	2.5	1	23	299	321	299	321	0.97
3	17	1.6	50	5.1	0.8	1	23	327	350	327	350	0.81
4	17	0.011	0.34	12.0	0.5	1	23	362	385	362	385	0.96
5	17	0.0023	0.07	14.1	5.0	1	23	448	471	448	471	0.95
6	17	0.03	0.93	10.6	0.6	2	23	478	500	477	500	0.96
7	17	0.016	0.49	11.5	2.4	1	23	513	536	513	536	0.96
8	17	0.042	1.3	10.1	1.7	1	23	555	578	555	578	0.90
9	17	0.0016	0.05	14.6	5.2	1	23	585	607	585	607	0.98
10	17	0.024	0.73	10.9	1.4	1	23	613	638	613	638	0.91
11	17	1.2e-05	0.00036	21.3	1.4	2	23	698	719	697	719	0.97
12	17	0.0014	0.043	14.8	1.7	1	23	725	748	725	748	0.95
13	17	0.0058	0.18	12.9	1.5	1	23	760	783	760	783	0.96
14	17	0.14	4.4	8.5	1.4	1	23	811	834	811	834	0.95
15	17	0.0041	0.12	13.3	3.1	1	23	841	863	841	863	0.99
16	17	0.00051	0.016	16.2	1.4	1	23	869	892	869	892	0.98
17	17	0.022	0.67	11.0	0.7	1	23	906	929	906	929	0.92

Sequence Information

Coding Sequence: ATGGACACCGACACCATTCCGGATGTTCCCAATGATAATCCGGAGACGTACTGTCGGCTCTGTTTTTCGGGTTTCTACGTGGAACCGGTGTACCCCCGGGATGGGCCACCGCGTGACGCGTTGTTGGACCTAATCTCGCAGCACGTGGACATTCACCTGTCGCCGGATGCGGACCACTCGTGTATGGTGTGCCGGATGTGTCAGATGACGCTGGAGAGCTTTCACAAGTACCGGACGCGCTGCCGAGCGCTGGACGAAGTGCTGCAGCGAAGGCGTCTCGAGTTGGCCGAGTTCCGCGTGAAGGAGGAACCCGCGGAGCAGCCTGCGCCGGTTCGGGGCTTCGAGAGGGACACGATTTATTGTCTGAGTGACAGCGATGACGACGAGTGTGGTGGCGGCGGAGATCAAGCAGGGGAAGAACTGGAACCGGAGGACGTGTATGAAGAAGTGGACGAAGACGAGGAAGCCGACGAAGAGGATTTGATCCGGGGCGATATGCTCGTCAAGCCGGAACCTTACGGAGTGGACGGACGAGCGGCAGATTATGAAGAAGGTGGTGGAGTCGGGCAAGAAGAGTACCGGGAGCCACCAATGCTTATCCGGAAGAGGGAACGCGTTGATACGAATGAGGTGGTCCTGTTGGACTCGGATGAAgaagatggtggtggtggtggtggtggtgacggCGATGATGGAGAAAGATCGATGGCTGCATCTACGAGAGCAAGCAGTGAAGCACCAGGGCAGGCGGATGATCCTGAACCGGACAGGGCTTTGCCGTATGAAGTCACTGAAGATGGCGCGTACCGGTGTACCATCTGTAAGGAGTCGTTCCGTTTGATGAAGGAGATCAAGTTGCACATCCGCAAGGCCCATCCGAAGGATTCGCTGATTTACTCGTGCAAGCATTGTCCCAAAAAGTTCTGGGACCTTAGTGTTTTGCGCGTTCACAACCGCTATCACACCATGGATTTCCCGTTCACCTGTGATGAGTGCGGGGCCAAGTTTCATTTGAAGGAACGGATGGACATTCACGTGGCCAAGTACCACGACAAAAACTCGCCCCAATATTCGGAAAAGCGGTTCAACTGTCCGCTATGTCCGCGCATTTTCATGCAGGAGCAAGGCCGCCAGAGACACATTCGCAACTTCCACGAAGTACGGCCGGACACATTGGAGATGGAGAACAGCCCGCTGCCCAACAGCTTCGTCTATTACTGTGAGCCATGCGAGGTGTCGTTCGAAACGCTGGAAGAATCGCAGGCGCACATTGCCGAGAAGCATCCGCGCGAGGAAGGGGAAGAAGCGGACGCCAATCCAGCAACGGTGGTGACCAAACGTTGCAAGTGTCCAGACTGTGGCAAGCTGTTCCGCAGCAGAACCGCTTTCAGGTCGCACCATTTGTCGAACCATGTCAGCAACATGCCGGTGGTTTGTGATGTATGTGGAAgtggatttttaagaaaatcacaGCTAATTCACCACAAAAACCGCTGGCACGGCGAGAATGCCAGGAACAAGGGTGCATTGGAACGCTACAAGTGTGATCACTGCGAGCGCTTTTTCATGCGGAACCAGGATCGAATCAGGCACGAACAGATCATTCACCAAATTGAAACTCCGGAGAAACTGCCCGCCGTCTGGGAGGGTCGCAAGAGTAACTTCCCCTGTTCCAAGTGTGACCGGAAGTTCCCCACGATGAAGACCATGCGAATTCACTTTTCGCTCAAACATCCGGATGTTGCTGTTCGATTCAAGTGCACTGTGTGCTCTAAACTGTTCAAACACAAGCAAACTTTACGAGACCACATGACCAACCATACCGGAGAACAGCCTTTCTTCTGTTCCGATGAGCAGTGTAACGAGCGGTTCATTCGCAAGAAGGATTACGATCGCCACATGCTCGACTTCCACGGACCGGATGATTCTGGCGATGAGGAGAAAAAGAAACGGTTCCCATGTCCGCACTGTCCGCGGAAGCTGCTATCTCGCGTGGCGCGGCTTATGCACATCCGGCACCATCACAAGGACGTATCAGAGTCGGCTTCAGCAGCCAAGCAATTCCTTGACGATCTTCCCAAAGATTCGAATCAATGCACATACTGTCCGAAGGTCTTCAACAACCGTAACACTCTGAAGCTGCATATGATGAACCACATGGGCAAACTGCCACATCCGTGTGATCAATGCGACGCCAGCTTTTACAAACCAACCGACCTGCAAAAACACAAACTTCGTTACCACCCCGGAGGTTCTGCGTTAAGTCTCGCCAACCGTTTCAAGTGCGCCTACTGTCCGCGTGTCTTTGTCCGGAAAACTGGCCGACGCTATCACCAAACCGTTTTCCACGGCGTAAAGGCTCCTACTCGAAAGGGCGCTGGCGCTCCTTCTCGCGGCAAGGCCCGAATTAAACCCGATCCGGATATGGTTTATCCGTGCGCACTTTGCTCACTCACCTTCAAGTCCAGCACGATGATCCAAGAacaccaccaacaacaacacccGGACCAGGAATTGTTCTACAAGTGTCCCCATTGTCCACATCGCACCGTCAATCGTCAAGCGTTCCTTTCCCACATTCGACTACATTCCGGTGGACCTCGTTACCAGTGCAACGAATGCACGGCAACGTTTGATCGCAAAATCTCGCTGGTCACGCACACGAAACGCTACCACGGCACGGAATCCAAGAACGGAAGCCCAGCGGTGGCCATGTTTAAGTGCTCCGTGTGCCCGCGCGAATTTATGCGCAACCAGGATCGCGTTCGGCACCAGGTGCAGATGCACAACTACCGCTCCAAGGCAACCGCCGACAACGACGAAAATCCGGGACCTTCCAAACCGGCCGGTCGGATCAAAATCAAGCAGGAACGCATCGATCCGAAGCCAGCGGCGGCATCGAGGGACGGTTTCAGCGTGTCCAGTGACGTCGAGGAGGAAGCGGAACTCATTACGGCGGATAATGATCACGTCAGAGGTGAAGCAGAAGAGGAAGTGCCATCGGTGCCGACCATCTCGTGCGTCGTGTCGATCAAGGAGGAAGCGATGGCCGCGAGACGTGACGCGGAATTTTAA
Protein Sequence: MDTDTIPDVPNDNPETYCRLCFSGFYVEPVYPRDGPPRDALLDLISQHVDIHLSPDADHSCMVCRMCQMTLESFHKYRTRCRALDEVLQRRRLELAEFRVKEEPAEQPAPVRGFERDTIYCLSDSDDDECGGGGDQAGEELEPEDVYEEVDEDEEADEEDLIRGDMLVKPEPYGVDGRAADYEEGGGVGQEEYREPPMLIRKRERVDTNEVVLLDSDEEDGGGGGGGDGDDGERSMAASTRASSEAPGQADDPEPDRALPYEVTEDGAYRCTICKESFRLMKEIKLHIRKAHPKDSLIYSCKHCPKKFWDLSVLRVHNRYHTMDFPFTCDECGAKFHLKERMDIHVAKYHDKNSPQYSEKRFNCPLCPRIFMQEQGRQRHIRNFHEVRPDTLEMENSPLPNSFVYYCEPCEVSFETLEESQAHIAEKHPREEGEEADANPATVVTKRCKCPDCGKLFRSRTAFRSHHLSNHVSNMPVVCDVCGSGFLRKSQLIHHKNRWHGENARNKGALERYKCDHCERFFMRNQDRIRHEQIIHQIETPEKLPAVWEGRKSNFPCSKCDRKFPTMKTMRIHFSLKHPDVAVRFKCTVCSKLFKHKQTLRDHMTNHTGEQPFFCSDEQCNERFIRKKDYDRHMLDFHGPDDSGDEEKKKRFPCPHCPRKLLSRVARLMHIRHHHKDVSESASAAKQFLDDLPKDSNQCTYCPKVFNNRNTLKLHMMNHMGKLPHPCDQCDASFYKPTDLQKHKLRYHPGGSALSLANRFKCAYCPRVFVRKTGRRYHQTVFHGVKAPTRKGAGAPSRGKARIKPDPDMVYPCALCSLTFKSSTMIQEHHQQQHPDQELFYKCPHCPHRTVNRQAFLSHIRLHSGGPRYQCNECTATFDRKISLVTHTKRYHGTESKNGSPAVAMFKCSVCPREFMRNQDRVRHQVQMHNYRSKATADNDENPGPSKPAGRIKIKQERIDPKPAAASRDGFSVSSDVEEEAELITADNDHVRGEAEEEVPSVPTISCVVSIKEEAMAARRDAEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00402013;
90% Identity: iTF_00402013;
80% Identity: -