Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:137721954-137725193[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.0062 17.4 1.1 3 23 213 234 212 234 0.94

2 10 0.0028 0.087 13.8 1.3 1 23 237 260 237 260 0.96

3 10 0.0013 0.039 14.9 0.3 3 21 266 284 265 285 0.95

4 10 9.8e-05 0.003 18.4 0.4 2 23 294 315 293 315 0.98

5 10 0.069 2.1 9.5 1.9 1 23 319 341 319 341 0.98

6 10 0.00014 0.0042 18.0 2.4 1 23 347 369 347 369 0.97

7 10 5.1e-05 0.0016 19.3 0.6 2 23 376 398 375 398 0.96

8 10 0.0053 0.16 13.0 4.2 1 23 404 426 404 426 0.97

9 10 0.0034 0.1 13.6 0.1 1 23 432 455 432 455 0.96

10 10 0.00013 0.0039 18.1 0.6 1 23 461 483 461 483 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.0062	17.4	1.1	3	23	213	234	212	234	0.94
2	10	0.0028	0.087	13.8	1.3	1	23	237	260	237	260	0.96
3	10	0.0013	0.039	14.9	0.3	3	21	266	284	265	285	0.95
4	10	9.8e-05	0.003	18.4	0.4	2	23	294	315	293	315	0.98
5	10	0.069	2.1	9.5	1.9	1	23	319	341	319	341	0.98
6	10	0.00014	0.0042	18.0	2.4	1	23	347	369	347	369	0.97
7	10	5.1e-05	0.0016	19.3	0.6	2	23	376	398	375	398	0.96
8	10	0.0053	0.16	13.0	4.2	1	23	404	426	404	426	0.97
9	10	0.0034	0.1	13.6	0.1	1	23	432	455	432	455	0.96
10	10	0.00013	0.0039	18.1	0.6	1	23	461	483	461	483	0.99

Sequence Information

Coding Sequence: ATGCCGCTCGATCTGATCGCGGACACCACCACGCTATGCCGGGTGTGCATGACGGCCAAGGAGGGTCATCGCACCGATCTGTACGATGCCGCTTCGTTCGTGTCCGGCCAGCCCAGCCTGCACGGGATGCTGAGAGCCGTTTGCGCACCGGTATTCGACAAATCCAACGACGCAGCAGACCGTCCACCCGGAATGCCCACCAAggtttgcgccatctgtcggaacgCCACCATTGCGGCCTTTAAACTGCACCAGATGTGCATCGATACCGAGCGGCGGTTGGGGCAGTTGCTGGCGCTTAAGCGGGAACTTCGGGAAGGGTTGGAGGGCGATGAGATTGGTGGAGAGTGTGGCGATCCGTTGAAGAGTAATGCTGAGGGGGCTTTGGAACCAACAGTGCAGACACAGTCTTCAATGCCTGAAGAGAAACATGATGAAGAAAAGGAACCTGAGGAGTCCGAGCAAATTCCCGAGAATATCGAAGCTTCTCTGCCATATGGTGAACACGAGGGTTCGATTAAAGTTGAAGAATTAGACTTGGTTGATACCAGCGATAACGAAGAACATGCCGAACATGCTTCTGATTCGGCCGAAAATCAGGAACCTACCAGCGTAGACTATACAATCAAGAGAAATTGTAAAATATGCTCGGAAACGTTCTACAAACCTTCCTTGCTGAGAAATCACATGACGCAAACGCATCAGCTGTACATGTGCGAAATATGCCACGAAACGTTTGGATCTCTTTCCTGGTTCGTTCAACACAAGTCCATGAAGCATAGAAAGCGACCTGCTTGTTCAAATTGTGGTGAGAAATTCGTTACTAAACTTGATTTGAAGAACCACCAACAACAAGGATCATGCTCGGGAAAGATTAATCAATGCTCAATATGCAAGGAAGTATTTCCCACAAGAGCTCTTCTGTATAAACATAGGATAACCCACAGGACCACTTACAAATGCAATATTTGTGACGTAATGTCGATCTCGAAATCAACGCACGATCTTCACATGAGGAGACACTTGGGCGATAAACAGTTCGCTTGCAACCACTGTCCAATGCGTTTTCACACAAGAGTAGAGCTGGCAAAACACATACTAACGCACACCAAGACCAAGAACACAGTTTGTGAAATTTGCGGCTCTCGATTCACAAGAAAAGAATCTTTAAAGATGCACGTAAAACGTGTACATGAAGGATATCGTCCCCACGAGTGCTCGCTGTGTGGACTAAAATTTTCCCTAATATGTCTCCTCAAGCGCCACATGTACACCCACACCGGGGAAAAACCATTCAAGTGCCAGCTGTGTCCGCAAGCGTACGCCCAAACCAACGATCTAGTCAAGCACGTGGCCCGCGGACATGGCCTCGACAAGCCTTACCAGTGCGATCGGTGCGATGAGGGGTTCCGGTTGCTGACGGATCTGCGCCAGCACTACCGGGTGCACGTGCAATCGACGGAAGGTGGCGCCGAACAAATGGACGAGGTGCGCTTCACCAGTGTGGCAATTTTGCAGAGGGCATTCGCCAAAGATAAGCAGCCGAAGGGAGAAGAAGCTTTTAATTAG
Protein Sequence: MPLDLIADTTTLCRVCMTAKEGHRTDLYDAASFVSGQPSLHGMLRAVCAPVFDKSNDAADRPPGMPTKVCAICRNATIAAFKLHQMCIDTERRLGQLLALKRELREGLEGDEIGGECGDPLKSNAEGALEPTVQTQSSMPEEKHDEEKEPEESEQIPENIEASLPYGEHEGSIKVEELDLVDTSDNEEHAEHASDSAENQEPTSVDYTIKRNCKICSETFYKPSLLRNHMTQTHQLYMCEICHETFGSLSWFVQHKSMKHRKRPACSNCGEKFVTKLDLKNHQQQGSCSGKINQCSICKEVFPTRALLYKHRITHRTTYKCNICDVMSISKSTHDLHMRRHLGDKQFACNHCPMRFHTRVELAKHILTHTKTKNTVCEICGSRFTRKESLKMHVKRVHEGYRPHECSLCGLKFSLICLLKRHMYTHTGEKPFKCQLCPQAYAQTNDLVKHVARGHGLDKPYQCDRCDEGFRLLTDLRQHYRVHVQSTEGGAEQMDEVRFTSVAILQRAFAKDKQPKGEEAFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -