Cpip004849.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:138327597-138330152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5e-06 4.5e-05 24.2 1.5 3 23 143 163 141 163 0.97 2 13 0.00034 0.01 16.7 0.3 2 23 176 197 175 197 0.94 3 13 8.3e-05 0.0025 18.7 2.9 1 23 223 245 223 245 0.94 4 13 2.4 75 4.6 0.2 1 23 259 281 259 281 0.96 5 13 1.2 37 5.6 0.9 1 23 287 311 287 311 0.79 6 13 1.3e-05 0.00039 21.2 0.4 1 23 376 398 376 398 0.98 7 13 0.0006 0.018 16.0 1.9 1 23 408 430 408 430 0.97 8 13 0.00018 0.0055 17.6 1.4 1 23 436 458 436 458 0.99 9 13 0.5 15 6.7 0.1 5 21 467 483 465 484 0.92 10 13 0.044 1.3 10.1 0.4 2 23 495 518 494 518 0.89 11 13 0.00076 0.023 15.6 0.2 2 23 554 575 553 575 0.93 12 13 6.9e-05 0.0021 18.9 2.1 1 23 582 604 582 604 0.97 13 13 0.12 3.7 8.7 3.7 1 23 615 637 615 637 0.96
Sequence Information
- Coding Sequence
- ATGATGTGTCGGCAAATTCTTCCGGACGTGACGGACGGTGGTATCGAACAGATTTACATTGTCAAAACGGAACCCGGCCTAGAAGATGATGGTGGGCTCGCTAACATGGTCCCGGAAATGGTTGACGAAATCAAAACGGAACCGAAGTTCGAGAATGATGAGGAAGAATATACAAACCCAGAGGATGAACAACCAAATGAGGAGGTTGGATTTGAAACGGTTGATGTGATTGTAAAAGAGGAACCAAAAGTGGGTTCCGATTGCGATTCGAAGTTGAAGTCTGAGACATCCGCAAAGGATCGATCTGATAGCAAAAAGGAAAAGACTAAACCCAAAACTGGGAAACAGGAAtcgaaaaaagagaaaaagctaAGTAGTTCCACTAAGGAGAAGGTTGATAATGCTCAAGTTAATGAGAATCTTGATTGCTCAGTATGTGGCAAAAAAACTAACAATAAGTACAATCTGCAAAAACACATGCAAACACACGACACGCAGAGAATGGCAGAAAAAGAAAAGGAACTAACTTGTCAAATTTGTGGCAAGGtctctttttctaaaaaaaatctaaaaatacatctTGCAGGGCATGAGAGAAAGGCACAAAAACTAGAACAactagaaaaaaagaaaaaatcgaaattggaGAAGGAGAAGCTTAAACGGTTCGTTTGTCACTATTGTCCCAGCAAGTTTACCACTAACTATAACCTTCAGCGCCACGAGGATCTTCACGACATTCCGCTAGACCAACAGATCCACAAGAGAAAAGAGTtcttttgttatgtttgtgatCAGGATTTGGGGTCGAAAGAAGGCATTCAGGAACATTTGTACACCCACGCTGACCAGCTGCCGTTTACGTGCGAGGAGTGCGATAAACCAATATCTATCAAATCGGTGCGTGATTTAAATCAGCACTTGGAAATGCACAAAGACACTACGAACGGAAGTGTTAAGTGTGCCTGGTGTCCGCTGCGTTTCCATTCActtaaaaactgcaaatttcacgaaaaaacgcACGTCAACGAAGGAAGCAGTGCTTTGGAGGCGCTCGAACGCAGAGCAAGCATTTTGAGCAAGAAAAAGAACGTTAAAGTCATCGTCGTTGAAGGTGCTTTGCGCTATGCATGCGATCTGTGTGATAAATCGTACACGTTGCTTGATTCGTTACGAGATCACATGAAGACGCACACTGATTGTGGTAAACCGAAAAAACTGCACGTTTGCACGATCTGTAACAAGTTGTTTACATCTGCCGATGGGCTTCATTCACACAGACTGGTTCATTCAGATTTATTGCCATATAAATGTGAATACTGCGATAGAGGCTTTAAAGAGACCGTTCGTTTAATTTCACATCGTCGCACTCACACGGGAGAGAGACCGTTCGTTTGTGGTTGTGGTCGAGCATTCGCGAAAAAATATACAATGATGTCTCACAAAAAGATATGTTTATCGCCGGAACTGCTGACAAGTTGCTCCTGTCGAATTTGTGGAGATAAATCCTTTCCAAGCTATGCGGATTTAATAAAACACGTAACTGGGGTACACACAGAGCCCATTCCGAGAACGAAATGTCAGTTTTGTCCCGCGTTAAGCCAAAATGCGCTTCTTCTGGTACGTCACGAGCATCGTCATCAGATGCCGAACGTGATTAAATGTGATCAGTGTAAtcgcattttcaaaaacaaagcaCTGTTGGAAGAGCATGAAGTTATACACATCAACACGCCACAATCATTTATTTGTGATATTTGCGGAATGACTTTCAGTCGACTCAAACGTCTAAAGAAGCACAAGAAAAACCACACAACAGTACGACGAAAACCTGCCAAGCTGCATTGTTGTGAGCTGTGCCCAAAAAAATTCGCATGGTTGGGGAACTTTCGCAGTCACCAAAAGTTGCACTACAACTCGAAAAGTAGACATTTTATCCCGTCACTGGTAGAGGGACCAGCACCAGAACCGGTCGTGGATGAAAATGAGGATATTGATTTTggtatgttagtaaaaacaGAAATGAAGTTAATATAA
- Protein Sequence
- MMCRQILPDVTDGGIEQIYIVKTEPGLEDDGGLANMVPEMVDEIKTEPKFENDEEEYTNPEDEQPNEEVGFETVDVIVKEEPKVGSDCDSKLKSETSAKDRSDSKKEKTKPKTGKQESKKEKKLSSSTKEKVDNAQVNENLDCSVCGKKTNNKYNLQKHMQTHDTQRMAEKEKELTCQICGKVSFSKKNLKIHLAGHERKAQKLEQLEKKKKSKLEKEKLKRFVCHYCPSKFTTNYNLQRHEDLHDIPLDQQIHKRKEFFCYVCDQDLGSKEGIQEHLYTHADQLPFTCEECDKPISIKSVRDLNQHLEMHKDTTNGSVKCAWCPLRFHSLKNCKFHEKTHVNEGSSALEALERRASILSKKKNVKVIVVEGALRYACDLCDKSYTLLDSLRDHMKTHTDCGKPKKLHVCTICNKLFTSADGLHSHRLVHSDLLPYKCEYCDRGFKETVRLISHRRTHTGERPFVCGCGRAFAKKYTMMSHKKICLSPELLTSCSCRICGDKSFPSYADLIKHVTGVHTEPIPRTKCQFCPALSQNALLLVRHEHRHQMPNVIKCDQCNRIFKNKALLEEHEVIHINTPQSFICDICGMTFSRLKRLKKHKKNHTTVRRKPAKLHCCELCPKKFAWLGNFRSHQKLHYNSKSRHFIPSLVEGPAPEPVVDENEDIDFGMLVKTEMKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400888;
- 90% Identity
- -
- 80% Identity
- -