Cpip009196.10
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:137478860-137537118[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.073 14.1 4.0 1 23 258 280 258 280 0.97 2 11 0.026 0.81 10.8 9.0 1 23 287 309 287 309 0.96 3 11 0.00043 0.013 16.4 6.5 1 23 315 337 315 337 0.98 4 11 0.0013 0.04 14.9 2.3 1 23 343 365 343 365 0.95 5 11 2e-05 0.00061 20.6 0.7 1 23 371 393 371 393 0.97 6 11 3.7e-05 0.0011 19.8 0.1 1 23 399 421 399 421 0.96 7 11 0.00022 0.0067 17.3 1.3 1 23 426 448 426 448 0.97 8 11 0.0058 0.18 12.8 0.1 6 23 459 477 454 477 0.89 9 11 0.0013 0.038 14.9 0.1 1 23 594 616 594 616 0.97 10 11 0.018 0.56 11.3 4.0 1 23 741 763 741 763 0.97 11 11 0.019 0.58 11.2 4.9 5 23 776 794 768 794 0.92
Sequence Information
- Coding Sequence
- ATGTGTGCGGCACAGACGAATCCGCCGTCCAGCTTTAACTACACGTGGGGCTTCGCGGACAATTCCCGCACCGAGTCGGTCGTCGAGATCAGCCCCAACATCAACTACACCGTGACGGATGCGTCGATGCCATACTTGCAGCTGCCGGACGGTGCCAGTATTATCGTGCAGAAGGATGCCAAGGGGACGATCACGCACGCCAACAAGGGCGTCCGGCGGATGATCGTCGTGAACGATCCGTCCGCGCTCCAGCAGGGCGGCGCGCAGCGCATCATCACCACCAGTGGCACAACCGTTGCACAGCATCCCGCAGCTAAGAAACATGAAGTTATAAATCAATCTAATTCCGCCCTAGCGAACGGAATCATCGACTCGAAGGCGAAAATCCTGACCACGACGtcgggcggcggcggcggctcgTCCGCGGCGACCGCCTTCATGTCCCCGCTCGGGCCGATCCAGCTGACGGCCGAGGAATGCAACGACATCCTGATGAAACGGGCGGCGGCGGCCGTTGCGGCCAACAATCAGCACGCCATCACCACCAACACCGAGGGGCACCATGCTGCCATCGCCGTCCAGGTCCAGAAGGTGATCCAGGGCCTCGAGGAGGGCGAAGACTCGCAGGCCACCACCTCGACACACCAGCTCAAGATCGAACCCACGCTGAGCATCTCGCCCAAGCTCGAGGCGGTCGAAATTGACTACAATGAGTACGTCCAGCAGGAGTCGGACACGCCCACGCCGAACGTGGTCCCGAAGGAGCGGCCGTACTCGTGCGACCAGTGTGGCAAATCGTTCCTGCTGAAGCACCACCTGACGACCCACGCCCGGGTTCACACCGTAGGTGAACGACCGCACGTGTGCGTCCACTGTGGCAAAGATTTTGCCCACAAGCACTGCTTGAACACCCATCTGCTGTTGCACTCGACGGATCGTCCGTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACGCTGAAGCATCACCTGTTGACGCACTCGCGCGTCCACAGCCGGGAGCGGCCCTTTGTCTGTCAGGAGTGTGGCCGTTCGTTCCCGTTGAAGCGTCACCTGGTCACGCACAGCAAGTTCCACGCCGGAGAGCGTCCGTACGTGTGCGAGGACTGCGGCGAGAGTTTTGCCCAGAAGGAGCACCTGGTGATGCACTCGCGGTTCCACGGGTCGGTCAATCCGTTCGTGTGTCCCGATTGTGGGGCTACGTTCCCGCGCAAGTTCCAGCTGGTGAACCACGGCAAGCTGCACGGGCGCATTCCGCACTCGTGTACGCTGTGCGGTAAGGAGTTCCTGCAGAAGAGGACGCTGGCGGCGCACATGAGAATCCACACCGGCGACCAGCCGTTCCCGTGCATCGCGTGCGGCGAAGGCTTCCGCACCAAGTCCGAGCTGAACGCGCACAACCGGTTAACGCACGGCGGCGTCAACCCGAACTCGTCCAACACGACCATCATCACCACCAACACCGTGGTCACGAcaaacgcccagcagcagcagcagcaggcccaACAACAGGCCGCCGCCCAGCAGGCAGCTCAGCAGCAAGCCGCCGCCCAGCAGGCCGCCCAACAGCAGGCTCAACAGCAAGCCCAACAGCAGGCCCAACAACAAGCGCAACAGCAGGCCCAGCAGCAGCACATCGAGGTGCAGCAGATTCAGCAGCAccaccagcagcaacagcaggtgCAGGACGTCAACACCGGCAACATCATCACGACCATCTCGACCGGCCAGAGCTCGCCGGAGACGTCGCCGCGGCCACAGTACGCGTGCCGCGAGTGTGGCAGTGCCTTCAACAGCCGGGAAGCGTTGGCGCTTCACCTGCGGCTGCACACCGGCGACAAGAGCCTGATGACGGACCTGTGCGCGCTGACCGCGGCCATCCCCGGCCATCTGTTCCCGGCCGTCAACCAAGAATATTCATTAATAGGAGGTGGCACGACGGTGGTCACAACCAACCCTGTAATGCAATCGTCTCCCGTTCCAGTACAAATAATCACCTCCTCCGGCCAGGTGGTTCAGCAAACCATCCAGCCGCAGAGCCCACCCCAACAGCAGGTTCAGCACCACCAAcaggtgcagcagcagcagcaaacccACCAAGTTCAGGtggttcagcagcagcagcaacaaaccCAACAGGTCCAGCAACAGGTTCAGCAGCACCAGCAAACCGTAGTGGTGGCGCAGGCCAAGCCCAAGTCCCACTACTGTGGCCACTGCGGCAAGGGCTTCGCCGCCAAGCACGGGCTGCTGCTGCACAACCGACGCCACCCGAACGGAGGCTGCACCGTGCGGACGCACGTGTGCGAGTGCGGTAAGGCGTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGTCAACATCTGGAGCAGAACCAACGCGGGGGTGGTGGCGGCGCAGCCgcccagcaacagcagcagggaCAGCAGCTTGTTGTGATCCAACAAACCAACCAGGAAGCGCtggtccagcagcagcagcaacagcaagccCAGCAGCAAGCGCAGCAGCAGGCCCAACAGCAGGCACAGCAGCAAGCcgcccagcagcagcaccaactGCAGCAGCAACAGGCGCAACAGCAagcccaacagcagcagcagcagcagcagaaccagAACAACCAGCATGCGATGCGCAACCTGGTGATCGCCAACCAGCCCGTGCAGGTACAATATGTGCAGGTCCTCGAGAGCAACACCGCCCAGGTCATCAAGTACGAGATCATCCACGACTCGTCCCGGCAGTCGAACGTCGAGTGA
- Protein Sequence
- MCAAQTNPPSSFNYTWGFADNSRTESVVEISPNINYTVTDASMPYLQLPDGASIIVQKDAKGTITHANKGVRRMIVVNDPSALQQGGAQRIITTSGTTVAQHPAAKKHEVINQSNSALANGIIDSKAKILTTTSGGGGGSSAATAFMSPLGPIQLTAEECNDILMKRAAAAVAANNQHAITTNTEGHHAAIAVQVQKVIQGLEEGEDSQATTSTHQLKIEPTLSISPKLEAVEIDYNEYVQQESDTPTPNVVPKERPYSCDQCGKSFLLKHHLTTHARVHTVGERPHVCVHCGKDFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEDCGESFAQKEHLVMHSRFHGSVNPFVCPDCGATFPRKFQLVNHGKLHGRIPHSCTLCGKEFLQKRTLAAHMRIHTGDQPFPCIACGEGFRTKSELNAHNRLTHGGVNPNSSNTTIITTNTVVTTNAQQQQQQAQQQAAAQQAAQQQAAAQQAAQQQAQQQAQQQAQQQAQQQAQQQHIEVQQIQQHHQQQQQVQDVNTGNIITTISTGQSSPETSPRPQYACRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAAIPGHLFPAVNQEYSLIGGGTTVVTTNPVMQSSPVPVQIITSSGQVVQQTIQPQSPPQQQVQHHQQVQQQQQTHQVQVVQQQQQQTQQVQQQVQQHQQTVVVAQAKPKSHYCGHCGKGFAAKHGLLLHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLEQNQRGGGGGAAAQQQQQGQQLVVIQQTNQEALVQQQQQQQAQQQAQQQAQQQAQQQAAQQQHQLQQQQAQQQAQQQQQQQQNQNNQHAMRNLVIANQPVQVQYVQVLESNTAQVIKYEIIHDSSRQSNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471758;
- 90% Identity
- iTF_01471758;
- 80% Identity
- -