Cpip009201.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:137708502-137710900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.4e-05 0.0029 18.5 2.1 2 23 205 227 204 227 0.96 2 12 7.1 2.2e+02 3.1 0.4 6 20 239 253 237 255 0.91 3 12 0.012 0.37 11.8 0.9 2 23 265 287 265 287 0.96 4 12 0.024 0.72 10.9 0.1 2 21 292 311 291 312 0.94 5 12 0.0081 0.25 12.4 0.7 1 23 359 381 359 381 0.94 6 12 4.5e-05 0.0014 19.5 0.5 1 23 386 408 386 408 0.96 7 12 3.9e-05 0.0012 19.7 0.1 2 23 413 434 412 434 0.97 8 12 0.0028 0.085 13.9 0.2 1 23 440 462 440 462 0.97 9 12 0.0021 0.063 14.3 4.4 1 23 468 491 468 491 0.93 10 12 9.3e-05 0.0029 18.5 1.9 1 23 497 519 497 519 0.98 11 12 0.0061 0.19 12.8 0.2 1 23 525 548 525 548 0.95 12 12 0.00093 0.028 15.4 0.3 1 23 554 576 554 576 0.96
Sequence Information
- Coding Sequence
- ATGCAGTTCGACCAAACTGGAGACACCGCTAAACTATGCCGAGTCTGTATGACGGCCAAGGAGGGTCATCGTACCGACCTCTACGTTACCACGTCGTTAGTATCCGGTCAGCCCAGCCTGTACGGAATGCTTAAAGCCGTCTGCGCCCCGGTGTTTGAGAAAACCGAAGCAGACCACCGTCCCGGAATGCCAACGAAGGTTTGCTCGATATGTCGGAATGCTATCCTAGCGGCCTTCAAGCTGCATCAAACGTGCATCGAAACCGATCGCCGGTTGGGGGAGTTGCTGGCGGTCAAGAGGGAACTTCAAGATCTGGAACATAACGATGGAACTGGAGATCCGTTGGGGTCCAACAGCAAGGAAATGCTGCGAGTTGGAATGTTGAACACGAGCGATGAAGTGGGTTGTGTTAAGACGGACGGAGAAACGCGACTTCTTAAGGAGGAGCAACCAAAAGAGGAGGAGGTAGATTCACTTCCGGAAGCTGAACATGTGGGTACGATAAAAGTTGAAGAGCTGAACTTGATGGAGGAAAATGACAATGACAACGATAATGCCTCTGATTGTGATGAGAACGAAGAACCTCTCGTTGAAGAAGATTCGAGCAAAACGACCTGTAAGATTTGCTCGAAATCTTTTAATAAAACTGCCATGCTGAGAAAGCACATGAGCATAAAGCAcaagaaaacaatcaaaaaatccGTGAAATGTTcctgtggaagaatttttaaaagcgAAAAAAGATTTAATGAACACACCGCTTCCGGTACGTGCTCTGGAGAGATTGGTAGGAAGTgtaaattatgtaataaaatcttcaaatcggTTGACGTCATGGTTAGACATCGCAACTCGGTGCATTCAGAGCCCGTTGTATGTTCCGAGTGTGGTAAAACGATGGCGAACTTCAACAGCCTGCGGATGCACTTGCGGGTCGGATACTGTTCCAAGCAGAAAGATCAGCCCCCGACGGAAGCTATGCTTGCTGCCAGGACTTGCAAGGTTTGTGGTGAATTGCAGAAAACTCGTTTCGCAGTAAGTGGCCACATGAAGGTTGCGCATCCGGACCGTATGTTTCGTTGCGACATTTGCGGTAAGGAGTTTCAACTTCAAAGATATCTGGATCTGCACAAAGTATCGCATGGTCCTAAAACGTACCTTTGCCCAACTTGCAACGAAACCTTGCCCACAAAAGAAGCTCTCAAGAAGCATCGACGAACCCACAAAGCCCCCATCACGTGTAACGTTTGTGGAAAAGTTGTTGCAACCAATTATTCACTGTCCGTTCACATGGAGCGGCACGTAGGTCTCAAACCGTTCGCTTGTGACAATTGTCCGATGCGATTTTTCACGAAAGCGGAGATTAGAGGTCACATGCTAACGCACACCAAGAAGCAGGACCACGTGTGTGACCTCTGTGGATCCCGATTCACGACCAATCATTCACTGAAGAAGCATGTTATACATGTCCACGAAGGTCAGCGTCCCTTTCCGTGCTCGCTGTGCAGTTTAAAGTTTGCCCACGCAAACCAACTGCAGCGCCACATGTACACGCACACTGGGGAAAAACCCCACAAGTGTGAACTTTGCCCGCAGGCGTACGCCCAGACCAACGATCTGGTCAAGCACGTGGCCCGCGCCCACGGCGATGGCAATCCGTACCTTTGCGACCTGTGCGACGAGGGGTTCCGGCTGCTGACGGATCTGCGTCAGCACTACCGGGTGCACGTGCAATCGACGGAGGGCGGAGCCGACCAGATGGAGGAAGTGCGCTTCACCAGTGTAGCGATACTGAAGAGGGCGTTCGCTAAAGCTAAACAACGGCTAGGAATCGATAGCGGGCTGAATTGA
- Protein Sequence
- MQFDQTGDTAKLCRVCMTAKEGHRTDLYVTTSLVSGQPSLYGMLKAVCAPVFEKTEADHRPGMPTKVCSICRNAILAAFKLHQTCIETDRRLGELLAVKRELQDLEHNDGTGDPLGSNSKEMLRVGMLNTSDEVGCVKTDGETRLLKEEQPKEEEVDSLPEAEHVGTIKVEELNLMEENDNDNDNASDCDENEEPLVEEDSSKTTCKICSKSFNKTAMLRKHMSIKHKKTIKKSVKCSCGRIFKSEKRFNEHTASGTCSGEIGRKCKLCNKIFKSVDVMVRHRNSVHSEPVVCSECGKTMANFNSLRMHLRVGYCSKQKDQPPTEAMLAARTCKVCGELQKTRFAVSGHMKVAHPDRMFRCDICGKEFQLQRYLDLHKVSHGPKTYLCPTCNETLPTKEALKKHRRTHKAPITCNVCGKVVATNYSLSVHMERHVGLKPFACDNCPMRFFTKAEIRGHMLTHTKKQDHVCDLCGSRFTTNHSLKKHVIHVHEGQRPFPCSLCSLKFAHANQLQRHMYTHTGEKPHKCELCPQAYAQTNDLVKHVARAHGDGNPYLCDLCDEGFRLLTDLRQHYRVHVQSTEGGADQMEEVRFTSVAILKRAFAKAKQRLGIDSGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -