Cpip007856.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:93254361-93304852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0045 0.14 13.2 2.5 1 23 59 81 59 81 0.98 2 13 0.046 1.4 10.0 3.5 1 23 86 109 86 109 0.95 3 13 0.07 2.2 9.4 0.3 1 23 291 313 291 313 0.98 4 13 9.8e-06 0.0003 21.6 1.5 1 23 776 798 776 798 0.98 5 13 0.00014 0.0044 17.9 0.1 2 23 805 826 804 826 0.97 6 13 0.00014 0.0042 18.0 3.8 1 23 832 855 832 855 0.97 7 13 0.029 0.89 10.7 0.1 2 23 910 931 909 931 0.96 8 13 0.013 0.39 11.8 0.5 1 23 937 959 937 959 0.98 9 13 0.0039 0.12 13.4 2.3 1 23 1021 1042 1021 1042 0.99 10 13 0.00017 0.0053 17.7 0.6 2 23 1055 1077 1054 1077 0.96 11 13 0.0025 0.075 14.0 3.3 1 23 1250 1273 1250 1273 0.98 12 13 5.8e-05 0.0018 19.1 0.6 1 23 1279 1301 1279 1301 0.98 13 13 0.0053 0.16 13.0 0.7 1 23 1307 1329 1307 1329 0.95
Sequence Information
- Coding Sequence
- atgcAATCGCATTACACCCTCGCCGAAGAGGAAGATCCGGACGTGCTGGCCGAGGACAACACGCGGCCCTCGCTGCCGGAGGATTTTCCCAACTTCCGGGACTTCCAGATCGAAAAGATGGTCCTGCACTTTCGCGTCGTGACGGACGGTTCCGAGCAGCGGCTCCGGCTGGGCTTCAAGTGCAAGCTGTGCCACGAAGTTTTTAACAAGACGATGCAGCTGCTGGGCCACATCCGGAATCACTTTGAGGACCACCACAGCTGCCGGGACTGCGGCAAGTACTTCTTCGACACGAACAAGCTAAACATTCACAAGAGGGCCAAACACACCCAGGCGCTTCGCTGCCAGCTGGGCTGCCCGAGCTACACGACGTCCAACATCAAGTGTCTGCAGACGCACTACCTGCGGTATCACTGCGTGAAGGTGCGCCCGCGGGAGATGAAAAAGATGGACGCTCTGGGGTCGCTGTTCCGCGTCAGCGAGGATCCCGAGTCGAAGATACGAATACGGCGCGGCCAGCTGGCCGATCAGCAGCGGGACTTTTCCGAAGTTGCCGGGTTGCTGTCGGTGCAACAGCAACAActtcagcaacagcagcagcatcagcagcagttGGGACAGATTCATCTGCAGCAGGTTGTTACGGTGGCGGAAGGTGCTGGTGGTGAGGGGGATGAAGAGGAAGACGGGGAGAATGAGGAAGAAGTGGAAACGTCGGAGGAGCAAGGCGATGCCGAGCCGGAGCCGGAGGAGGACGAGTTTGACGAGCTGGACGATTACGAGCAGCCGGTTGAGTGTTGCGTTTGCGACGTCTACATTCCGAACGAGGAAATCCTGCGGGAACACGAGGAAGTCAGTCACGCTAGTCCCTACAGTTGTAAGATTTGTTCGAGTGCGTTCGAACAGCTGGAAGATGCCCGCACTCACTACGAAACGCACGAGAAGGTCCCGGTTCTGCAGAGTGCGCCGCAGATCCAAACCATAACGTTGACCCCGGGACAGCACCTGCAGCAAACCGCCATCCCAATACAACACCAACAGCAAACAAACCCAACCCCGACCATGACCACCATGATCATCATGCACAACGGCACGCCCGTCCTGGTCCCCGTACAAACCTTCGACAGCAGCCAACTGGTCCCGGCGGCGTTCCCCACCCACCAAACTCCCCAAGCCCAACATGCAGCAGCCCCGCCAGGCACGGCCACCCTAACCCCGATAACCACGGCCTGGCCAATCGGCCAGTCGTTCCTACCCGTTCAAAATCAAATCGAAATCATTCCAATCCACCAAGCGGCGGCCGCGACCGCCGGAACCGCCCCCATCCAGAACATCATTAACGTGAGGCACCACGACCCGGGGTCGACGACGCCGCAAGGAATTGTCATCACACCCATCGATCAAAACTACCTGAGGCATCAGCAGGCACTGCAAGCGCAGCTCCACCTGCAGCAACAGATTCAACAAGCGCAACAGCAGCACCAACAACAGTATCAACAACACGAATCCCCCGAGACCTTGTCCCGGATCACTTCGCAGCCCACGATCTTCCCGAACCGACTGAAAATAATCTGCAGATCGTCGTCCGTCGTGACCGGGTTCAGCTTGCACACAAACAGCACGTTCTCCGGCGGTGCCATCTCCGCGTCCGGAATGTCCCCGACAATCTCCAGAATCGTGGCCCGCGCCTTGGCCTCCTTCTCCGCCATCATCTCGGCAATCTCCTCCGCACTCTTCCCCTCCGTATCGTCAATCTCCTCGTCCGCCGCGATCCTTCCCCCGGCCAGCCGCTCCGCCGACGGCGACGGTGACCGACTCGGCACCCGGAAACCCCGCGGGTCCTCGAACGGATCCTCCAGCACCACCGTGTGCTGTCCGCCCCCGTCCAGCGACAGCAGCTCCGGACCCAGCGTAAAGAAAAACTGCGACCCCAGCAAACCCTCCCCGGCGCAAACCATCGACAGCAGGCCCGGCTCGGTGTGCTTAATCTTCGGCACCGTTTCCCCCTCAAAgAAGTGTGCCACACCAGGAAACTGCTGGAGGTCCCCCAAAATGGAGTCCGAGCAGATCAAGGTGGAGCCCGATTTCTACTTTCCAGTCGGTGAAACGTATGCCGCAGAGGAGGACAACGCGGCAGAGGACGGTCTCGACGAAGAGGAGCTGCTCGAGATGCACCAGATCGACCTGGATGACAGCCCGGTGAAGCCAAAGTTAGTTGcgaatgacgacgacgacggaagtGGCCGTGAAGTCGATAGTGATAGTGGtgaaggtggtggtggtggcatcGTTAGTAATAAGGAAGCTCTAGAAGCGAACAGACAGTACAAGTGTGATGAGTGTGGGAAGGTGTTGGACACGGCGTATCATCTGCAACGGCACAAGAAGATTCACACTGGGGAGCGTCCCAGTGTCTGCCGGCTGTGCGATAAGGCGTTCATTGAGCCATCCGCGCTGAAGGTTCACCTGAGAATCCACACCGGCGAGAAGCCGTTCCGCTGCAAGATCTGCCCGCTTCGTTTCACACAATCTTGCAACCTGCAGTCCCACTACCGACAAGTGCACGGTGTCGACCCAAGGGGTGATCCCCAATATTTCCGCAAAATGTGCCAGCTtctgcaacaacaacagcagcaacaacaacaacaagccaaGCCCTCAGCATCGACAACCTCACGCTCCAGGTCGCTGCCCAAGTTGACTCCCAAACCGAGCGAAGGACTTTGGGAGTGCTGCGTGTGTGACGAACCATTCCAAGACCGCGATCTGCTGCTGATCCACGAGGAGACGCACGTTCCGGAAGCGCCCTTCGAGTGTCGTTACTGCACCACGGTCTACTCCGGGTTGGTCAACTTCCGATCGCACGTCAACATCCACCGAGTCAGCTTGCGCCAGGGAGGCTTTTCGGCTGCCGCGGCTCGCAGTCACTTCCAATCGGGAGTTCGGGCGAATGCCAGCGCGATCGTTGCCGGTCGTAAACCCGTGGAGAACAGTGGCGAGAGTGACGTGGCGCTGAACACGAACCAGCCGTTCGTGCCGAGCAACGACAAGACGGCACCGTACAAGTGCGTCGAGTGCAAGCGCAACTTCCAGAAGCAAGATCTGTACTCCCACATGAAGGTACATCTCAAGCAGAAGAACATTTTCTCCAAGAAGAGTCTCAAGTGTGAAAAGTGCGGCCGCGTGTTTGAGAAGGAGTTGACGCTGAAGAAGCACATGGACACCGTCCATCCGACCAGCGCCAACGCCTTGCTACGGGAGGCACTCCGCGAGCAGATAACCAAACGCACGCAGTCCCCTGCGACGGGGACGACAACCCTCAAGATCTCCTCCGAAGTTGACCTGGTGCCGATCGAGCCGCGTGTCAAACAGGAAGCGGCGGAAAGTGCCCTCGGCGATGACGAGGTCAACTCGACGGTGTCGGACAATCCCATCCTGACGCAGCTGCTCAACAGCAACTCCAGCCCGCAGCTATCCGTGGTGCCTGGTGGGAGCTCGCGTAGTCCAGTTGCTGGAGAACGTGGCGACGAGGGAGGATTCGTGATCAGTGCGGTGGCAACCGTGGATCATAGCTTTCTCGAGCAGTTGGACGCGATGGAGCGGGgtacgcagcagcagcaggagcagCCGATGCCAGCGCTTCGCCGGATGCCCGTGCTGGAGGAGAGCTTACGTCGCCCTCCTGTAGGCTCCTCCCAGCCCGACCAGCAGCCCCCCACCGGGCCCGCTCCGCTCAGCTCGGGCACCTACAGCTGCGTGTACTGCCCGCGGACCTTCAACGAGCACTTTGGCTTCCGGCAGCACATGCGCTCCATGCACTACGACGAGAAGCGCCACAAATGCCCGGAGTGCGGCAAAAAGTTCTCCCTCGGAATTACGCTGGCCACGCACATGCGAATCCACACGGCCGTCCACCCGTTCACCTGTATCGTCTGCTTCAAGACGTTCAGCCGGTCGGCGTCTCTCAATGGACACCTGTCGATGCATTCATACGGCGAGGTCAAGTGCGCCGACTGTGGCGAAACCATGCTCAACGTGTTCAACTACATGAAGCACATCGAGAAGTTCCACCCGGACTTCCTACGTAACATTGCCGCCTACCGGAAGAAGGCCGAAGCGATGCTGCAGCGACGCCGCGAGCTGATTGTCGAAATCACCCGTGGCCTCGCCCAGCACCAGTCGGAAATTCCGAACGTCCTGGCGCGACTCCGTGGCGAAGTCAACGCCGCGCCCCCACCGTCCGAGTCGTTCAAAATTCGACTCGGCAAGCCGTACGCCCAAGAGCAGGACGAAGTGAGCTCCAGCGAGGGCGTCCTCGTCAAGCTTGAACAGCCCGACTCCGTCAGTGGTGGCGGCGGCAGTGACGAAGTGGTCGTCAGTTCGGCCTCGGACCACGAAACGCTGCCGGCACTGCGAGCCGAACTGCGGAAACGTCCCAGGAGTGGCCAGGAGGCGGAACCGGCGCGGAAATCTGCCCGCACTGCCGGGTCGTCGTCGCCGAATTTGAAGCGTCTGCTCGAGGCGGCCTCCCCGCTGGCCACGGTCAAGTGCGAACCCTCGTCGGAGTAA
- Protein Sequence
- MQSHYTLAEEEDPDVLAEDNTRPSLPEDFPNFRDFQIEKMVLHFRVVTDGSEQRLRLGFKCKLCHEVFNKTMQLLGHIRNHFEDHHSCRDCGKYFFDTNKLNIHKRAKHTQALRCQLGCPSYTTSNIKCLQTHYLRYHCVKVRPREMKKMDALGSLFRVSEDPESKIRIRRGQLADQQRDFSEVAGLLSVQQQQLQQQQQHQQQLGQIHLQQVVTVAEGAGGEGDEEEDGENEEEVETSEEQGDAEPEPEEDEFDELDDYEQPVECCVCDVYIPNEEILREHEEVSHASPYSCKICSSAFEQLEDARTHYETHEKVPVLQSAPQIQTITLTPGQHLQQTAIPIQHQQQTNPTPTMTTMIIMHNGTPVLVPVQTFDSSQLVPAAFPTHQTPQAQHAAAPPGTATLTPITTAWPIGQSFLPVQNQIEIIPIHQAAAATAGTAPIQNIINVRHHDPGSTTPQGIVITPIDQNYLRHQQALQAQLHLQQQIQQAQQQHQQQYQQHESPETLSRITSQPTIFPNRLKIICRSSSVVTGFSLHTNSTFSGGAISASGMSPTISRIVARALASFSAIISAISSALFPSVSSISSSAAILPPASRSADGDGDRLGTRKPRGSSNGSSSTTVCCPPPSSDSSSGPSVKKNCDPSKPSPAQTIDSRPGSVCLIFGTVSPSKKCATPGNCWRSPKMESEQIKVEPDFYFPVGETYAAEEDNAAEDGLDEEELLEMHQIDLDDSPVKPKLVANDDDDGSGREVDSDSGEGGGGGIVSNKEALEANRQYKCDECGKVLDTAYHLQRHKKIHTGERPSVCRLCDKAFIEPSALKVHLRIHTGEKPFRCKICPLRFTQSCNLQSHYRQVHGVDPRGDPQYFRKMCQLLQQQQQQQQQQAKPSASTTSRSRSLPKLTPKPSEGLWECCVCDEPFQDRDLLLIHEETHVPEAPFECRYCTTVYSGLVNFRSHVNIHRVSLRQGGFSAAAARSHFQSGVRANASAIVAGRKPVENSGESDVALNTNQPFVPSNDKTAPYKCVECKRNFQKQDLYSHMKVHLKQKNIFSKKSLKCEKCGRVFEKELTLKKHMDTVHPTSANALLREALREQITKRTQSPATGTTTLKISSEVDLVPIEPRVKQEAAESALGDDEVNSTVSDNPILTQLLNSNSSPQLSVVPGGSSRSPVAGERGDEGGFVISAVATVDHSFLEQLDAMERGTQQQQEQPMPALRRMPVLEESLRRPPVGSSQPDQQPPTGPAPLSSGTYSCVYCPRTFNEHFGFRQHMRSMHYDEKRHKCPECGKKFSLGITLATHMRIHTAVHPFTCIVCFKTFSRSASLNGHLSMHSYGEVKCADCGETMLNVFNYMKHIEKFHPDFLRNIAAYRKKAEAMLQRRRELIVEITRGLAQHQSEIPNVLARLRGEVNAAPPPSESFKIRLGKPYAQEQDEVSSSEGVLVKLEQPDSVSGGGGSDEVVVSSASDHETLPALRAELRKRPRSGQEAEPARKSARTAGSSSPNLKRLLEAASPLATVKCEPSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -