Cpip005603.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:21351937-21365405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1e-05 0.00031 21.6 0.8 2 23 268 289 267 289 0.98 2 14 9.3e-05 0.0029 18.5 0.5 1 23 297 319 297 319 0.97 3 14 0.00018 0.0056 17.6 2.7 1 23 329 351 329 351 0.99 4 14 0.48 15 6.8 1.0 1 10 390 399 390 400 0.93 5 14 1.5 46 5.3 0.9 1 23 440 462 440 462 0.80 6 14 0.026 0.79 10.8 1.1 1 23 479 501 479 501 0.98 7 14 5.8e-05 0.0018 19.1 2.2 1 23 509 531 509 531 0.98 8 14 0.0031 0.095 13.7 2.0 1 23 558 580 558 580 0.98 9 14 0.0096 0.29 12.2 5.7 1 23 588 611 588 611 0.97 10 14 7.8 2.4e+02 3.0 0.0 9 23 638 652 636 652 0.93 11 14 3.1e-05 0.00096 20.0 3.7 1 23 748 771 748 771 0.97 12 14 0.00052 0.016 16.1 0.8 1 21 818 838 818 839 0.93 13 14 0.00025 0.0077 17.1 0.6 1 23 857 879 857 879 0.99 14 14 0.0018 0.055 14.5 0.1 1 23 887 910 887 910 0.96
Sequence Information
- Coding Sequence
- ATGATGCATGTTGCACATTGTAGCAGAGAACCAGCCCGTCCGAATTCCCTCGATGACTTTTGCCGGGTCTGTCTGCTGCGGAAGCCTTCGCTGCGCCCGCTGACGGGCCAGTCGTCCGGCGTCATGATTCCGGAGATGCTGTACAAGCTCACCGGCACGATGCTGAACGTGCAGGACCAGTTGCCGGCGGTCATCTGCGAGCGCTGTCTCGTGAAGCTGGACCTGGCGTACAGCGTAACGGAGGAGTTCCGCCGGCAGGAGGAGCAGCTGCGTCAGTTTTTGTGGAAGGGAGGCTCGTTGGTGGGGCAACTGGTGGAGTACGGGTCGGGGGTGGAATTGCGACCGAAGCCGCACTCGGAAGAGGTCATTAGGAGGTTGGTGGAAGAGAGTAGAACTGTGGAAGAGCCGAAGCCTACCATCAAGCGAGAACCGCTGGATGTGGTCGACGACTTTGTCGAGCACCGCTCGGAGGAAGATTCGAATCTCAACGAGGGAATGGCCGTGAAGGAGGAATTACCCGATAAGGAAGCTGATGGGGCCACTTCTTTCGAGGTGAAAATTCATTCCTCGCCGATGGAGTCCGAACAGGACGATGGCGACAAGGATTCAGATTATCGTCTGGGTGGAACTGAAACCCGGGGAGATGGATTTATTCAATCGCCGATGGAGTCCGGCGCGGACGATGATGACTTTGAAGAGGAAGATGACGAACGGGACGTTGATTTTCAACCCAATCGCTCGACAGTTTCTGTTACAAGTGTAGAAGATGAGATATCCGAGATTCTCGCAGATGATGCGACGAAGTGTCCGGATTGCAGTAAAGAGTTCCCCACTCCGTTATCGTTACGACGACACTACAGAAGGCACATTGTCAGGAAGAAGGGAATGTTTCGGTGCGAGAATTGTAATAAGaattttgccTCGAAAGCCGATCTCAGACTACATGAAGTGACTCACATTAACAAGGCTAAAAAGAGCTCGCTTTATGAGTGCAAATATTGTTGGAAGATCTTTACACGTAAATATCGCTTGGGTTTGCATCAGAAACGTCACGAGCAGGAGAACGATGTGGCAATCAAACCGAAGCTGGTCGAAGAGCTTCAAGCAACTCCACAGGAAACCGAAAGTGAACCATCTGCTTCTGGCAGCagttcaaagcaaaaaatctACGAATGCAAGCATTGTCAAAAGGTTTTCGCCTGGCAATGTCGCCACAAACAGCATGAAGAGCAGTGCGAAAAGCAGAGACCATCTGAAACCCAACAACAGGAAGCTCCAACAACCGACCCAGCCTCCACCATCGCTCATCCGCCCTACTTCGAGTGCGCCCTCTGCCCGAAGATCTTCCTCTCGGGAGCTCGCTTCCGGCACCACCTAAAATTGCACGAAAAGAAGCAAGCCGACGAGGCGGCAAACCCCACCCCGGCAGCCCGCTTCCCGTGCCCCAAGTGCAAATGCTCGTACGAGGAAGAGTGGAAGCTCGAACTGCACCTGCAAAGGCACGCCACCGTCGAAAGTGGCAAGTACCGGTGCAAAACGTGCGACCACGCGTTCGCCACCCCGATGGACCTGCGAAGGCACGAAAAGAAGCACGCCTCCCGGCCGGAGTGGCGAACCCCGCCGGAGGAAATCCCCGCCCCGCTGATGATCGTCAAAAACGAGCGCAAGTTCTTCAAGTGTCGCAAGTGCGTCAAGATATTCGTCAACAAGTCCACCTACTTCTCGCACGCGCAGATCCACGTGGCGATCAAAACGGGCGCGTTCAAGTGTCCGCACTGTCCGAAGCGGTACGGCCAGCGGTGCCGGCTGCGAATGCACCTGCGGGAAAAGCACGACGTGTACTTGCCGAAACAGGAggagggggaggaggaggaggaggaagaaggGGAGCCCTCCGCAGAGCGGGAGGCGATGTTTTCGACGGAGGAGAGTTATGAAGTGCATTTGCGGGAGCATCGGAGCGAAGGTGGGGCGGAGGGGGTATCCGGAGGGGAGCTGAAGCAAGAGTCACCTACCAGCGCATCTGATCAACACTCAATCGCCATCGAAGAAGTGAAGGTTCCTTCCATCAAGCAAGAGCCAACAATCGATGATGACAGCAGCCAAACGCAAGACAGCTTTACGCGGGTAAAGACCGAGTCCCCGATGGTCGTGCTACCAATACAAAATGTTGAAGTGGTTCAACAACCTACTCCCGGCAGTAGCGCTTTTGGCAACGAGACTTTCGACGAGTCTAAAGAGTTCAAGTGTGAACTGTGCGGAAAGTGTTACTCCCAGCGAGGCGTCCTCAACCGGCACATCCGACACGTGCACAAGCTGGACGGGTCGACCGCCGTCGGTGCCGAAGGTCCTCCGGCCGATACGCGCGAGTGTGACGAGTGCAAGAAGTACATCAAACGGAAGCTCTTTAGCGAACATCGCAAACACCACGAGAACGTGCGGCTGAGGAAGTTCGTGTGTCCCTTGTGCGATAAAGCGTTTCGTACAAACCATCACCAGAAGGAGCACGTGGCAACGCGAGCCTGTGAGAAAACGTCCGAGGTGGCGAAGTATGGCGCCGATGCCAAGTACAAGTGCGTCGAGTGTGGCAAAGCGTACAACAACAGCCAGAGCATTGATTCGCATATGAAGCGGCACAAGGTGCTGCGGGAGGAGCGATACAAGTGCGGTATTTGTCAAAAGGTATTTGGAGCGAAACGGGAACTAGAAGTTCACAATATGAGAGTGCACGAGACTGTCCTTTGA
- Protein Sequence
- MMHVAHCSREPARPNSLDDFCRVCLLRKPSLRPLTGQSSGVMIPEMLYKLTGTMLNVQDQLPAVICERCLVKLDLAYSVTEEFRRQEEQLRQFLWKGGSLVGQLVEYGSGVELRPKPHSEEVIRRLVEESRTVEEPKPTIKREPLDVVDDFVEHRSEEDSNLNEGMAVKEELPDKEADGATSFEVKIHSSPMESEQDDGDKDSDYRLGGTETRGDGFIQSPMESGADDDDFEEEDDERDVDFQPNRSTVSVTSVEDEISEILADDATKCPDCSKEFPTPLSLRRHYRRHIVRKKGMFRCENCNKNFASKADLRLHEVTHINKAKKSSLYECKYCWKIFTRKYRLGLHQKRHEQENDVAIKPKLVEELQATPQETESEPSASGSSSKQKIYECKHCQKVFAWQCRHKQHEEQCEKQRPSETQQQEAPTTDPASTIAHPPYFECALCPKIFLSGARFRHHLKLHEKKQADEAANPTPAARFPCPKCKCSYEEEWKLELHLQRHATVESGKYRCKTCDHAFATPMDLRRHEKKHASRPEWRTPPEEIPAPLMIVKNERKFFKCRKCVKIFVNKSTYFSHAQIHVAIKTGAFKCPHCPKRYGQRCRLRMHLREKHDVYLPKQEEGEEEEEEEGEPSAEREAMFSTEESYEVHLREHRSEGGAEGVSGGELKQESPTSASDQHSIAIEEVKVPSIKQEPTIDDDSSQTQDSFTRVKTESPMVVLPIQNVEVVQQPTPGSSAFGNETFDESKEFKCELCGKCYSQRGVLNRHIRHVHKLDGSTAVGAEGPPADTRECDECKKYIKRKLFSEHRKHHENVRLRKFVCPLCDKAFRTNHHQKEHVATRACEKTSEVAKYGADAKYKCVECGKAYNNSQSIDSHMKRHKVLREERYKCGICQKVFGAKRELEVHNMRVHETVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -