Cpip010649.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:180990866-180993475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00079 0.024 15.6 1.0 1 21 45 65 45 66 0.96 2 16 0.015 0.47 11.5 2.5 2 23 80 101 79 101 0.97 3 16 0.0015 0.045 14.7 0.0 2 23 143 164 142 164 0.96 4 16 0.00027 0.0084 17.0 4.0 1 23 169 192 169 192 0.97 5 16 0.00025 0.0077 17.2 0.1 2 21 213 232 212 233 0.94 6 16 0.00078 0.024 15.6 0.5 2 23 242 263 241 263 0.96 7 16 0.027 0.83 10.7 1.0 1 21 269 291 269 292 0.94 8 16 4.8e-05 0.0015 19.4 0.3 2 23 301 322 300 322 0.97 9 16 2.5e-05 0.00077 20.3 1.8 2 23 329 350 329 350 0.98 10 16 4.6e-05 0.0014 19.5 3.9 1 23 452 474 452 474 0.98 11 16 0.0046 0.14 13.2 0.2 1 23 479 501 479 501 0.98 12 16 0.088 2.7 9.1 0.7 1 20 516 535 516 536 0.95 13 16 0.015 0.47 11.5 0.2 2 23 551 572 550 572 0.93 14 16 0.35 11 7.3 0.3 2 20 582 602 581 604 0.89 15 16 0.039 1.2 10.3 1.4 3 23 640 660 639 660 0.97 16 16 4.2 1.3e+02 3.9 0.2 3 20 688 705 686 707 0.89
Sequence Information
- Coding Sequence
- ATGGAAGATTCACTAAACACTACCTCGAATTCTGTGATGAGCAGCCACGAGGATGAGTTCCAAGAGCAAAGCGCCTCGGACAGTCCAGAAGACGACGAGTCTCCCACCGAAGACAACAACTCGTCCAAGATCTACAGCTGCGACCGGTGCCCCAAGCGATACGTTCAGCTGGCCCATCTGCAATCGCACCAAAAGTACTGCAAAACGCCGCTCGAAAAGGTCGAGAGCAAAACACAGATGTGCCATCTGTGTCCGGCCAAGTTCAAGAAAACCGCCGAGTTCCGGTACCACATGCTCAAACACAACGGCGAAACTCCGTACGGATGCCGGTCCGAAGGTTGCACTAAGGGATTCCACTCGCCGAAGGCACGCTTGGCGCACGAGAAGAAATGCGGGAGGGAGCAGCAAAGTGGACCTGGGGAGGTGGTGTGCGATGTTTGCGGAGCGTTCTTTAAGTCCGCTAATGCTCTTACGCAGCACGCGCTCAGCCATCGAGAACCGAGCCACGAGTGTCACATCTGCGGGGAGAAGTTTGTGAGGAAGGGTAAGCTTGGTTCCCATTACCGGAAAAAGCATAAGGTTGAACCTCCGTGGAAGAAGGAAGCTGGGGATGGCGAGAGTTCTGAGGCCGAGGACGAGTGTGGCGATTGTGGAAGGGTCTTTGACAGCGCTACCAACTTGAGAATGCACAGGAAGTTCTGCAAAGCTACGGCTGGGGTGCTGACCTGCGAGCAGTGCGGAAGGGTTTTCACGGATAAGGCCAGGTTCGGTTACCACATGAATCAGCACAACGACGTTCGGCCTTTCGAGTGTCAGATCGAAGGCTGCACGAAGTCGTTCTTCAGCCCGGATACGAGGAAGAAGCACCATCGGGTGTGCGGCAAGTCGGACAAGCCGATCGAATGTACCGTGTGTGGGGCGAAGTTGAAGACCTCGGATTCGCTGAGGACGCACATGCAAACGCACAGCACGGGGCCGCGGCCCACGTGCCACATCTGTGGGCAGGAGTTCACCATGAAGGGGAACCTGCGCGAACACCTGAACCGGCACGCGAATGGTACCTTAAAGGGAACTCGGGTGAAGGCGACGCTGAAGTGTAAGAGCAGATATCAGAAGCGCGAAGAATCTTCAGACGAAGATATGCCCAAGAAACGGAAAAGTAAACGGAAGGCGACTGCTGAATCGTCACCGGAACAACCCAATTCGTTGTTCGAGGTGGACGAAATCAAGCAGGAGATCGTTGAAGAGGAGATCATCGTAACGGAACATCAAGTTCCACCTCCGGAATCCGATCTTCCGCTGAATCAGGGCACCAAACGCCCCAAGCGAGCCTGTGCAGTTCCAGCCAGCGCCCACAAATGTACCGACTGTGAAGCCACCTTCACCAAGGCTCACTCGCTGAAGAACCACATGCAGGTGCACTCGAAGCGACGCTACGAGTGTACGATCTGCGGCAAGAAACTTCTAAAGCAAGCAAGTCTGGACGTTCACATGCAGAGCCACGAGCGCAAGAACGCCGACAAGTCGTCGGACTCGCTGGAGATTCACTCGTGCGACGATTGCTGCAAGAGCTTCGTCGATTTGAGGGCTCTTGAGGCGCATCGCGTTGACTGCGAGAAGATCGGCGCGCCTCTCGCTACCTCCGGCAGCTATTGTCACCTGTGTCCAGCGGCGTTTCAGGACGCGGACCAGCTGAGGCTTCACCTCGGCGAGCACGACGATGAGCTGGAGGACAGCACGCTCAAGTGTCGTCGCGAGGGTTGCGAGGAACGCTTCAGCAACTGCGGAGACTTGTGGGAACACGAAGCGCGCTGCGAAGAGGTTGGCCACTTTGTTTGTGACATCTGCGCGGGAGCGGTTGAGGAGTTTGACGAGCTGCGTAGGCATGAAGCAGCTCATTTGGAACAGGCGGCAAATTGTCGAATTTGCGGGGAGACGTTCTACTCGGAaACCGACTCGGAGCACCACTGGCGAACGCACTTTGGAGAGGCGCTTCCGGATGAGGAACTGCCGAAAGATGCCAACTGGCGGCTGATGGAATCGATGCCGGAGAGCACGTTTTGTGGGTTGTGCAGTAAGGGGTTTGTGACCGAGTTGGTGCTGCGACTGCATCGGCAGTTTTGCGAGCAGAGGTTCTAG
- Protein Sequence
- MEDSLNTTSNSVMSSHEDEFQEQSASDSPEDDESPTEDNNSSKIYSCDRCPKRYVQLAHLQSHQKYCKTPLEKVESKTQMCHLCPAKFKKTAEFRYHMLKHNGETPYGCRSEGCTKGFHSPKARLAHEKKCGREQQSGPGEVVCDVCGAFFKSANALTQHALSHREPSHECHICGEKFVRKGKLGSHYRKKHKVEPPWKKEAGDGESSEAEDECGDCGRVFDSATNLRMHRKFCKATAGVLTCEQCGRVFTDKARFGYHMNQHNDVRPFECQIEGCTKSFFSPDTRKKHHRVCGKSDKPIECTVCGAKLKTSDSLRTHMQTHSTGPRPTCHICGQEFTMKGNLREHLNRHANGTLKGTRVKATLKCKSRYQKREESSDEDMPKKRKSKRKATAESSPEQPNSLFEVDEIKQEIVEEEIIVTEHQVPPPESDLPLNQGTKRPKRACAVPASAHKCTDCEATFTKAHSLKNHMQVHSKRRYECTICGKKLLKQASLDVHMQSHERKNADKSSDSLEIHSCDDCCKSFVDLRALEAHRVDCEKIGAPLATSGSYCHLCPAAFQDADQLRLHLGEHDDELEDSTLKCRREGCEERFSNCGDLWEHEARCEEVGHFVCDICAGAVEEFDELRRHEAAHLEQAANCRICGETFYSETDSEHHWRTHFGEALPDEELPKDANWRLMESMPESTFCGLCSKGFVTELVLRLHRQFCEQRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400846;
- 90% Identity
- iTF_00400846;
- 80% Identity
- -