Cpip009677.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:150086657-150121745[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.035 1.1 10.4 0.4 2 23 155 176 154 176 0.95 2 19 0.00082 0.025 15.5 0.8 1 23 182 204 182 204 0.95 3 19 3.8e-06 0.00012 22.9 0.3 1 23 209 231 209 231 0.98 4 19 2.2e-05 0.00069 20.4 2.3 1 23 237 259 237 259 0.99 5 19 0.00011 0.0033 18.3 1.2 1 23 265 287 265 287 0.98 6 19 2.6e-05 0.0008 20.2 1.1 1 23 293 315 293 315 0.97 7 19 0.075 2.3 9.4 3.8 3 23 323 344 321 344 0.93 8 19 4.1e-05 0.0013 19.6 1.1 3 23 352 372 351 372 0.98 9 19 0.2 6 8.0 0.7 1 23 627 650 627 650 0.95 10 19 1.1 35 5.6 0.2 1 23 656 679 656 679 0.91 11 19 0.00098 0.03 15.3 3.5 1 23 701 723 701 723 0.98 12 19 4e-05 0.0012 19.6 2.1 1 23 730 752 730 752 0.99 13 19 5.3 1.6e+02 3.5 0.2 2 23 768 790 767 790 0.95 14 19 0.002 0.06 14.3 0.2 1 23 814 836 814 836 0.98 15 19 0.15 4.5 8.4 0.2 1 23 904 927 904 927 0.94 16 19 0.0011 0.032 15.2 3.4 2 23 1004 1026 1004 1026 0.97 17 19 0.0072 0.22 12.6 3.1 1 23 1032 1054 1032 1054 0.97 18 19 0.24 7.4 7.8 1.5 1 23 1069 1091 1069 1091 0.98 19 19 0.37 11 7.2 0.1 1 23 1115 1138 1115 1138 0.91
Sequence Information
- Coding Sequence
- ATGAGTTCCGCACCGTTTTGTCGAACTTGCTTGTCCCGAACCAGTTCCAAATATCGCTCCCTTTTCAAGGAATCCTTCATATGTAGtgaaaaacgaaattttgcCAATTTGCTAACCGAGTTTATTCCATCGCTTGAGATCCGAAAAGAGGACAGTTTACCACAAATGATTTGCGGAAAATGTGCGTTGGATTTGAAACACTGTTTCCGCTTCCGAAGGAAATGTTTGCAGGCGGATTCTGTGTTGAGATCTTCACAGGAAACGAATTTTGTTGGTGGAAATACAATAGCAAATCTAGAGGAGGAAGTAGGCTCTGGTAGCGAATCTGAACTCAGTGAAATTGCATCGCCGAAGGAAGTTGAACCTTCTAGTAAGAATACTGACGAGAATATTGAAAGTATAACGGAGGCTATTCCAGAATGTCCGGACAAGGAGATTCTACCTAACAAACCCAAATCCCTCGAATGTCCCTTCTGCCAAAAAGTGCTTAGTTCCGTCAAATCCTATCGAACCCACCAGGCGTTGCACTCCGACGTGGCCAACTTCCTGTGCAATCGCTGTGGCGAACGGTTCAAGACGAAAATGGCCTACACGGGACACATGGCCACGCACAATCCTAACAAGTTCAGGTGCGAAATTTGCGAAAAATCCTACCGGCAAGCAGCGTCCCTGCGAAGTCACATGCTAATTCACTCCGAGGAACGTCCGTTCAAGTGTTCGGTCTGCAATCACGCAACGACTCAGAAAAGTAGCCTGGCGAGACACATGCTGACCCATTCCGAGCAGAAATCCTACGTTTGCGATCTGTGTGGAGAGCACTTCCGGTTCAAGGGGAATTTGGCCGTCCACAAACAACGTCACACCAAGCAGAAAGATTTCCACTGCCAAAAGTGCCCGAAAAGTTTCGTCACGAAGGACGAACTGGCGAACCACGCCATAACCCACACCGAGGAGCGACCGTTCGGCTGTGATTTGTGCAGCAAGAGTTTCAACCGGAAGAGTGCGCTGCAGTTTCACCGGAAGCACACGCACTCGGTTCAGCCAAAGAATGCGTGCCACGTTTGTGGGCGGGGCTTTGTGCAGAAAATTACGCTCCAGAATCATCTGAAGACGCACATTTTGACTGATTACGCCGCCGCTGCGAGTCgtgtttttttcgcaaaaacaaaaaaaaacttggcttctcgttttaaagttcagaaaaaattgttttgttcttcaCAAGTGACAAAAGCTCAGCATCATCGTCCTGTCCCAATGGAGACCCGCTCAGCGAACGCAGGTTTCTCCGTGGTCGCCGCCACGGGCCCAAACATTTGCCGGATCTGCCTAACCAACGGCGGAACCGGAAAACAAGGGCAAGTGCAAGGTCTGGAATCGATCTTCAGCACCGTGGTGGACTACGAGTGCAAAAGTTTGTACGGGATCCTGCTGGAGGTTTGCGCTCCACTCGGCACCCGGGAGATGCTCAACGGGATGCCGGAACGGATCTGCCGGGGTTGCAAGTGGCGCCTGCTGACCGCGTACGAGCTGTACGAGACCTGCCTGCGGAGTGACGAAAAGATGCGCGAGGTTAGCGCACGCGAGATCCAGCTCAAGCAGGCCATGCAAGTGGAGAAAAAGGAAGAACAGCAGGTCGTCATCAAGCAGGAACTGCCCGACGGGGACGAGCAGCCAAGTTTCCAGCACACAGAAAACGACACAACCATGGAAGACTACAGCGACGCGTCCGCTCTGTTGCTCGAGAGTCAGTTCTACCCGGATGCGGAAAGTTCGCTGGTCGCCCCTTCGCCGAACCTGCTGGAAGAAATGGCCCCGGCCGTGGACCTCCAGGAAACGTTTTTCGAAGAACATTACCAACCCGGCGAGAACGGGAACCACAAGTGTGGCATTTGCGAGGCAGAATTCCAGTACAAGAGTGCCGCCCGGACGCACATTCTCCAGAAGCACGACCCGTCGAAACCGTTCAAGTGCGACGTGTGTTTCATCTCGCTGACGACGGAACTGCGCCTGATTCGGCACAAGGCCTTGGGACACGGCGTCGGAGTGATCAAATGTGACCAGAGTGCGGAGGACAAGGACGAGTCCGGCGCCACGATCTACACGTGCAAGATCTGCTCGAAAACCTTCACTTCGATGGTTCGCTTCAAGCGCCACAAGAACGTCCACGTCGCGTACAACAGGCCGTTCAAGTGCGACGTCTGTCTGTACCGGTTCTCAACCCGATCGCAGCTTCAACAACACGCGAAAACGCACCAGGAAAAGCCCGAAGGCACCGACCAACCCGATCAGGACCAGTGGCCGTGCGAGTTCTGCGAGGAAAAGCTACCAAACAAACGTGCCCAGACGATGCACGCCCGGCGATTCCACCCGGAGCAAAGTCTCGCAGTAGAATCTCCCGCCGGAACTGCCACTTCCACCGGCAGTGACAAGAACGAGTACAAATGCATCATCTGCTCGGAGGCGTTCGCCCGCGAAAGTGTCCTCAACACGCACATGAAGATGCACGAGCTGATCGCACTGGAGAAGGAAAAGGAACAACGGCAGCAACAGCTGGAAGCGATGCTCAACAAGCGGgaacagcagcaacagcagcagcagcagaattcCGCGTTGGATTCGAGTACGACCGCGGTCGGTGCCATCAGCTTCAACGAAAGTCTGACGACGATGGGCAGTGGGAAGAAACGTAGCGACGCCGATATGCTTTTTGTGTGCATCGTCTGCGAGCAGGAGTTTGAGGAGCGGGATATGCTGTTGAAGCACCAGAAAAGGCTGCACAAGGAGCTGGAGCTGAACATTGTGTCGAGTGGGGCCGCGCAGGAACAGCAGGATGGGGCGGCGGAGGAAGCCCCGGTAGATGACTTGGAAGACAGCGCACGTACCAAAGATCCGGAACAAACCCAGGACGAGTCGATGGTGGTCGATCTGGACCCGATCGAGTTCCTTGCGACGGAAAACGGTAAAACGAAGCCGCGTGGCGGCAGCGGTGGTCCTCCATCCCTGCCCAAATGTGAACTCTGCGGGAAAACCTTCATGTACAACTGCCTCCTGCAAACCCACATCAAAAAGAGTCACAGCGAATCAAAGCCGTTCGAGTGCAAAACGTGCCACATGCGTTTCGGCTACCGAGGCACCCTCCAGAAGCACGAACTCTCCCACTCGGCGCAGAACGTCCGCGCCGGTGGCCACGGTTCCATCATGTACAAGTGCAAACTGTGCGGGGCCAAGTTCCTCGAGCAGAAGCTGCTAACCTTCCACCTGAGGACCCACCGCAGCGCACCTCCCACTCCAACCCAAAAAGCGGAACCGGAACCACCCACCACCAAAAAGGTGGAAATCTTCGCGTGCGGCTTTTGTCCGCAAATCTTCAACGCCAAGGACGAGTTCGATCGGCACCTGGTCAATGTCCACCGACAGACGCCGGCGCCACCGCCATTGAAACCGGCTCCCGGAATCAACCGGAACTCGCCAACGCCCGCGGCGGCGCGCAAGACTGCCGAACGGCGGACGCCCATGAACGAGAAAGAAACGTTTTTCGACAGCTTGTCGATCGTCAAACTGGAACATCCGTTGGGAACGGTTAAGTTAGATTAG
- Protein Sequence
- MSSAPFCRTCLSRTSSKYRSLFKESFICSEKRNFANLLTEFIPSLEIRKEDSLPQMICGKCALDLKHCFRFRRKCLQADSVLRSSQETNFVGGNTIANLEEEVGSGSESELSEIASPKEVEPSSKNTDENIESITEAIPECPDKEILPNKPKSLECPFCQKVLSSVKSYRTHQALHSDVANFLCNRCGERFKTKMAYTGHMATHNPNKFRCEICEKSYRQAASLRSHMLIHSEERPFKCSVCNHATTQKSSLARHMLTHSEQKSYVCDLCGEHFRFKGNLAVHKQRHTKQKDFHCQKCPKSFVTKDELANHAITHTEERPFGCDLCSKSFNRKSALQFHRKHTHSVQPKNACHVCGRGFVQKITLQNHLKTHILTDYAAAASRVFFAKTKKNLASRFKVQKKLFCSSQVTKAQHHRPVPMETRSANAGFSVVAATGPNICRICLTNGGTGKQGQVQGLESIFSTVVDYECKSLYGILLEVCAPLGTREMLNGMPERICRGCKWRLLTAYELYETCLRSDEKMREVSAREIQLKQAMQVEKKEEQQVVIKQELPDGDEQPSFQHTENDTTMEDYSDASALLLESQFYPDAESSLVAPSPNLLEEMAPAVDLQETFFEEHYQPGENGNHKCGICEAEFQYKSAARTHILQKHDPSKPFKCDVCFISLTTELRLIRHKALGHGVGVIKCDQSAEDKDESGATIYTCKICSKTFTSMVRFKRHKNVHVAYNRPFKCDVCLYRFSTRSQLQQHAKTHQEKPEGTDQPDQDQWPCEFCEEKLPNKRAQTMHARRFHPEQSLAVESPAGTATSTGSDKNEYKCIICSEAFARESVLNTHMKMHELIALEKEKEQRQQQLEAMLNKREQQQQQQQQNSALDSSTTAVGAISFNESLTTMGSGKKRSDADMLFVCIVCEQEFEERDMLLKHQKRLHKELELNIVSSGAAQEQQDGAAEEAPVDDLEDSARTKDPEQTQDESMVVDLDPIEFLATENGKTKPRGGSGGPPSLPKCELCGKTFMYNCLLQTHIKKSHSESKPFECKTCHMRFGYRGTLQKHELSHSAQNVRAGGHGSIMYKCKLCGAKFLEQKLLTFHLRTHRSAPPTPTQKAEPEPPTTKKVEIFACGFCPQIFNAKDEFDRHLVNVHRQTPAPPPLKPAPGINRNSPTPAAARKTAERRTPMNEKETFFDSLSIVKLEHPLGTVKLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -