Basic Information

Insect: Culex pipiens
Gene Symbol: -
Assembly: GCA_016801865.2
Location: NC:51644361-51659587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.056 1.7 9.8 0.0 3 23 196 217 194 217 0.92

2 17 0.00016 0.0048 17.8 0.3 1 23 222 244 222 244 0.96

3 17 0.00058 0.018 16.0 0.6 1 23 250 273 250 273 0.92

4 17 0.00048 0.015 16.3 2.0 1 23 279 301 279 301 0.98

5 17 0.00013 0.004 18.0 0.5 1 23 307 329 307 329 0.98

6 17 1.6 50 5.1 1.7 2 23 348 369 347 369 0.92

7 17 0.0001 0.0031 18.4 4.7 1 23 375 397 375 397 0.99

8 17 4.2e-05 0.0013 19.6 4.0 1 23 403 426 403 426 0.96

9 17 0.0012 0.037 15.0 1.2 1 23 432 454 432 454 0.99

10 17 0.011 0.35 11.9 0.1 2 23 745 767 744 767 0.96

11 17 0.00044 0.013 16.4 2.0 1 23 772 794 772 794 0.98

12 17 0.001 0.032 15.2 0.1 1 23 800 823 800 823 0.94

13 17 0.00021 0.0063 17.4 0.3 1 23 829 851 829 851 0.96

14 17 2e-05 0.00062 20.6 0.6 1 23 857 879 857 879 0.98

15 17 0.11 3.3 8.8 2.6 2 23 898 919 897 919 0.96

16 17 0.00017 0.0052 17.7 3.3 1 23 925 947 925 947 0.99

17 17 1e-05 0.00031 21.5 5.5 1 23 953 976 953 976 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.056	1.7	9.8	0.0	3	23	196	217	194	217	0.92
2	17	0.00016	0.0048	17.8	0.3	1	23	222	244	222	244	0.96
3	17	0.00058	0.018	16.0	0.6	1	23	250	273	250	273	0.92
4	17	0.00048	0.015	16.3	2.0	1	23	279	301	279	301	0.98
5	17	0.00013	0.004	18.0	0.5	1	23	307	329	307	329	0.98
6	17	1.6	50	5.1	1.7	2	23	348	369	347	369	0.92
7	17	0.0001	0.0031	18.4	4.7	1	23	375	397	375	397	0.99
8	17	4.2e-05	0.0013	19.6	4.0	1	23	403	426	403	426	0.96
9	17	0.0012	0.037	15.0	1.2	1	23	432	454	432	454	0.99
10	17	0.011	0.35	11.9	0.1	2	23	745	767	744	767	0.96
11	17	0.00044	0.013	16.4	2.0	1	23	772	794	772	794	0.98
12	17	0.001	0.032	15.2	0.1	1	23	800	823	800	823	0.94
13	17	0.00021	0.0063	17.4	0.3	1	23	829	851	829	851	0.96
14	17	2e-05	0.00062	20.6	0.6	1	23	857	879	857	879	0.98
15	17	0.11	3.3	8.8	2.6	2	23	898	919	897	919	0.96
16	17	0.00017	0.0052	17.7	3.3	1	23	925	947	925	947	0.99
17	17	1e-05	0.00031	21.5	5.5	1	23	953	976	953	976	0.96

Sequence Information

Coding Sequence: ATGGATTTCTACGCCACCATTTGTCGGCTGTGTGAGGCGTCGGACAAGCTGTGCGAAAAGTGGTTGGACCCGTTTGCCGCCGGGAACGAGAGCTTGCTGGGGAAGATCCGAACCTGCACAAGTGTGGAGCTCTCCCGCTCGGACGCGCTTCCGAAGCGCATCTGCGTACGGTGCCAGAAATCGTTGGACCAGGCGCACAACTTCCGCCTCCAGTGCTCCATCAGCGATGCCAAGCTGCGCCACGAGATACAGTTTCTGGAACAGAACCACTGGAATCCCCAGCTAACGATTCCCCCGTTCATCCCCCAGGATGTCAAAGTGGAAGAGCCGCGTGAACTCGCGCGGCCAGAATCACCCTCGCTAACGGTGCCAATGTTCATCAAGTCGGAACAACCCGAGCTGGAGGACGAGCAGGAGTTTGTACCGTCCAAGGTCGAGCTAGAGTGGCATTCGGAGGAGGAGGAAATTCTGGACGACGGTGACGGGAGCTTTTCCGAAAAATCTGACTCGGCGGAGGACACGGAAAACGACTCGGAGGATGAAAAAGATCAGTCTCGAAAGAGCACCAAACCCCGCTCGACGATCTGCGAAACTTGCGGCGAACAGTTCGAGCGACCTGCGCTAATGTACGCCCACGTGAATGCTGTCCACGGCAAGAAGCGTTTCGCGTGCGAGCTCTGTCCAAAGACGTTTGCGCGCAAGTCTCGCCTCACGGATCACGCGATGCAGCACGCCGGCCTGCgccagttcgagtgcggccaaTGTGACAAAAAATACACCACCCAGCAGGGCCTGAAAACGCACACTGAAGACGTCCACTCGGACAACCTGCCGTACGTGTGTGACAAGTGCGGCCGGGGCTTTTCCAAGGAGGGACGTCTTCGGCACCACTACAGCATGCACATCGAGTCGAGGAACTTTGTGTGTGGCGTTTGTGCGAAGGGATTCAAGACGCAGGCGCACCTGAATCTGCACGCGAACACGCATCTCCCGCAGGACGAGAAGAAGAAGCGGAAGCGACGGAACCGTCAGCGGACGTGCATCTGTCCGTTCTGTGGGAAGGTTTCGAACTCGGCGGGCACGCACGATATGCACGTGAGAACGCACACGGGTGAACAACGCTACGAGTGTCACATCTGCGGAAAACGGTTCACCTCGTCCGGCTCGCACAAAAAGCACCTCCGCGTCCACTCGGGTGAGAAACCGTTCGTTTGCGAGTATTGCCAGAAGCCGTTCCGCCAGAAGCACCACATGACGACGCACATCCGCGGCGTCCACACCAACGAAAAGCCCTACCAGTGTCGGTTCTGCTCGCGGGGTTTCGCCACCCGGGGCAACATGCAGCTGCACGAGCGAAGTCACGGCGGTGGACCGGAAGCACCCACCATGAAGCAGGAACTGGTCGCCGGCTCGATGGAGGTAAGTATGACCGGGAGCAACAGTCCGCAGGCGTCTCCGCTGGTCACGGAAGCGCCGTCGCCGATGATGAATCCGGGCGTGATGGTGATGCATCAGCAGCCACCGCCGGACATGTACTTTCACAGTCAAACACCTGTTCTCTCTCAAATGGAATTCTACGCCACGATCTGCCGGCTGTGCGAGGCCACGGACAAGTTGGACGGCAAGTGGGCCAACCTGTTTGCGGCCGAGCACGAACCGCTGCTGAAACGAATCCGGTCGCTGACCACTATCGAGCTTCACTGGAATGACCAGCTTCCAAAGCGAATCTGTGGCCAGTGTCAAACCAGCCTGGAGCAGGCCTACAACTTCAAGCTGCAGTGcgaaatcacgaacaaaaagcTGCGCCATGAGATCGAGTTTCTGGAGAAGAACGACTGGAACACGAAGCTGCCGATTCCGCCAATCGATTTGGGTGGGCTGGACGTCAAGCCGGAAACCTCACCGGCCAAGAGGGAAATCATCGCGGAACCACTCAGTATCAAGTCGGAACTGAGCGAcgatgagcagcagcagcagcagcagcaaatcgATGACCAGGAAGACGCCAGTTACTGCATGTCCAAGATTGAGACCATGTTCGCTTCGGACGACGATGCTGATGACCGTGATGGTTCCGATGGGAGTCGCTCCTTGTCGGAAAGCTCGACCGAatcttcctcctcctccgaagatgacgacgatgacgattcgGAAGACTCCGAACCCAAGCACAAACGGAAACGCGGTCGCCCAAGATTGTCCAACAAGTCCTCGGGAAAGCCGCGCTCAAGCGTGTGTGACACGTGCGGCCAGCAGTTCGCGAAGCCCAAGCTGATGTACGCCCACGTGCGGTCTGCCCACGGAGACCGTCGGTTCAAGTGTCGCTTTTGTCCGAAAACGTTCGTCCGGAACGCCCGCCTTAAGGAACACGAACGTCAGCACACCGGTGAGCGGGACTTCCAGTGTGAGCAGTGCGAACGCAAATACCCGACGGCACGCGGCCTCAAGGTTCACATGGAGGACATTCACAGCGAGAATCTCCCGTACGTTTGTGATAAGTGCGGCAAGGGCTTCGCCAAAGAGGGCAAACTTCGCCAGCATTACAGCGCCCATCTGGACATCCGGAAGTACGTGTGCTCGGTGTGTTCGAAAGGGTTCAAAACGAGGACGAATCTGAACCTGCACGTGCAGATTCATCTGCCGCCGGATCAACGGAAAATGCGGAAACGGGAAAACCAGCACAAGGTGTGCATCTGTCCGTTCTGTGGGAAGGTGTCGACCTCGCTTGGCACGCACAACATGCACATCCGGACGCATACGGGCGAACAACGCTACGAGTGCCAGATCTGCCAGAAGCGGTTCACCTCGTCCGGCTCGCACCAGAAGCACATGCGCGTCCACTCGGGCGAGAAACCCTTTGTTTGCGAATTTTGCCAGAAATCCTTCCGCCAGAAGCACCATCTCACCACGCACATGCGAGGCGTCCACAAGAATGAAAACCCGGAGGCGTTCGTCCGGCCGGGCATTTGTGGCCGGCCGCGTGGTGTGGCGGCTAAAACGCCCGGAACGACGGCGGTTCCGGCGGTCACACCGGAAGTGGTTCCACAGCCATTGGGAGCGGTAGAAGAGGGTAAGTATTCGGGGGCTGGAGGAAGCGGAGAGGGGGGTGTGGTGCTGAACCCGGGGGTGGTCCAACCGGAAATGTACTTTCACAGCCAGACGCCGTAG
Protein Sequence: MDFYATICRLCEASDKLCEKWLDPFAAGNESLLGKIRTCTSVELSRSDALPKRICVRCQKSLDQAHNFRLQCSISDAKLRHEIQFLEQNHWNPQLTIPPFIPQDVKVEEPRELARPESPSLTVPMFIKSEQPELEDEQEFVPSKVELEWHSEEEEILDDGDGSFSEKSDSAEDTENDSEDEKDQSRKSTKPRSTICETCGEQFERPALMYAHVNAVHGKKRFACELCPKTFARKSRLTDHAMQHAGLRQFECGQCDKKYTTQQGLKTHTEDVHSDNLPYVCDKCGRGFSKEGRLRHHYSMHIESRNFVCGVCAKGFKTQAHLNLHANTHLPQDEKKKRKRRNRQRTCICPFCGKVSNSAGTHDMHVRTHTGEQRYECHICGKRFTSSGSHKKHLRVHSGEKPFVCEYCQKPFRQKHHMTTHIRGVHTNEKPYQCRFCSRGFATRGNMQLHERSHGGGPEAPTMKQELVAGSMEVSMTGSNSPQASPLVTEAPSPMMNPGVMVMHQQPPPDMYFHSQTPVLSQMEFYATICRLCEATDKLDGKWANLFAAEHEPLLKRIRSLTTIELHWNDQLPKRICGQCQTSLEQAYNFKLQCEITNKKLRHEIEFLEKNDWNTKLPIPPIDLGGLDVKPETSPAKREIIAEPLSIKSELSDDEQQQQQQQIDDQEDASYCMSKIETMFASDDDADDRDGSDGSRSLSESSTESSSSSEDDDDDDSEDSEPKHKRKRGRPRLSNKSSGKPRSSVCDTCGQQFAKPKLMYAHVRSAHGDRRFKCRFCPKTFVRNARLKEHERQHTGERDFQCEQCERKYPTARGLKVHMEDIHSENLPYVCDKCGKGFAKEGKLRQHYSAHLDIRKYVCSVCSKGFKTRTNLNLHVQIHLPPDQRKMRKRENQHKVCICPFCGKVSTSLGTHNMHIRTHTGEQRYECQICQKRFTSSGSHQKHMRVHSGEKPFVCEFCQKSFRQKHHLTTHMRGVHKNENPEAFVRPGICGRPRGVAAKTPGTTAVPAVTPEVVPQPLGAVEEGKYSGAGGSGEGGVVLNPGVVQPEMYFHSQTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -