Cpip007020.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:63993471-64008074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 5.7 1.7e+02 3.4 3.0 2 23 209 231 208 231 0.93 2 31 0.12 3.8 8.7 0.3 2 22 247 267 247 267 0.95 3 31 0.00087 0.027 15.4 1.0 1 23 274 297 274 297 0.96 4 31 1.2 38 5.5 3.9 1 23 314 337 314 337 0.89 5 31 0.011 0.34 12.0 1.3 2 22 350 370 349 370 0.95 6 31 0.042 1.3 10.1 1.9 1 23 377 399 377 399 0.94 7 31 0.00017 0.0054 17.6 3.9 1 23 405 427 405 427 0.98 8 31 0.00048 0.015 16.3 2.4 1 23 434 456 434 456 0.97 9 31 0.3 9.1 7.5 2.6 1 23 464 486 464 486 0.88 10 31 0.0076 0.23 12.5 3.5 1 23 492 515 492 515 0.97 11 31 0.0011 0.035 15.1 4.5 1 23 521 543 521 543 0.98 12 31 0.0023 0.072 14.1 1.5 1 22 1259 1280 1259 1280 0.96 13 31 0.0038 0.12 13.4 0.6 1 23 1287 1310 1287 1310 0.96 14 31 0.095 2.9 9.0 2.2 3 23 1329 1350 1328 1350 0.95 15 31 0.034 1.1 10.4 2.9 1 21 1363 1383 1363 1384 0.95 16 31 0.004 0.12 13.4 0.2 1 23 1391 1413 1391 1413 0.97 17 31 0.042 1.3 10.2 0.4 1 23 1419 1441 1419 1441 0.95 18 31 5.9e-06 0.00018 22.3 1.5 1 23 1447 1469 1447 1469 0.98 19 31 0.046 1.4 10.0 2.3 1 23 1475 1497 1475 1497 0.98 20 31 0.0034 0.1 13.6 2.5 1 23 1504 1527 1504 1527 0.97 21 31 0.22 6.6 7.9 0.2 1 16 1533 1548 1533 1550 0.92 22 31 1.2 37 5.5 5.9 1 22 1834 1855 1834 1855 0.96 23 31 0.0098 0.3 12.1 3.0 1 23 1862 1885 1862 1885 0.97 24 31 1 31 5.8 1.4 1 21 1902 1922 1902 1925 0.87 25 31 0.042 1.3 10.1 0.5 2 20 1939 1957 1938 1959 0.93 26 31 0.00024 0.0075 17.2 0.7 1 23 1966 1988 1966 1988 0.97 27 31 0.0036 0.11 13.5 0.1 1 23 1994 2016 1994 2016 0.98 28 31 8.7e-06 0.00027 21.7 0.9 1 23 2022 2044 2022 2044 0.98 29 31 0.0014 0.043 14.8 1.8 1 23 2050 2072 2050 2072 0.96 30 31 0.0018 0.056 14.4 0.9 1 23 2078 2101 2078 2101 0.97 31 31 3.8e-05 0.0012 19.7 0.9 1 23 2107 2129 2107 2129 0.99
Sequence Information
- Coding Sequence
- atggATCCAAACGCCAGCATCGatgttgaatataaagtttgtcGAATTTGTGTTCAATCCACCGTAGAAGATAACTATCCCCACAATGAACTGTACGATGAAGTCAGCGTCGAAACGATGCTCAAGGAAGTGCTAGAGAAGTTGCAGATTCCTGACGATGAAAACCTCGCTGTACGATGCTGTAGCTCTTGTAGAGAGGAGCTCTGGATTACCTATCGCTTCATAAAAAAGTTGGAGGACGCCAACAATAAGATCAAGAACCTCGAGCATTACGTTGTGGAAGCTGACAAaagTGATCCCTTGACGGAATCTCCTAGTAAATTACAAATAGATGTTAAATTGGAATATGAGGTAGAAGATTACTCAACGTAtgaaaaagaaaacacaaaTGATTTTGATGAAACAGACAGCGATGATAAACCATTAATGCAACGGCGAGCGAAGCGCAAACCTGGAAGAAAACGCAAGAAAGTCAAAACTGATCCAGAAGACTCTGATGAGAGCGAATATTCACCGAAACAGGAGGAAGAGGAAAACTCATCAGCATCCGAGGCCGAGGAAAAGGAGGAACTAACTAAAAACAAACGAACTCGATACGCAATCACGGCCAATTCGCAACCGAAGCGATGCTGTGGCTGCAAGGAACCAGTCAGCACGCACGAACAGCTGGAAGAGCATTCCGAAAAATTCCACCAGCAACGAGCGTTCGATGCTGAGATACTCGAACAGAAGCCGGAAGAGTGTTCGATATGTTACGAGAGGTTTGAGACGAGAATGGAACTCCTTCTGCACCGCAGGAAAGCTTTTGCTAAAGAGTTACACTCGTGCAAAAAGTGTCCTGCCGATTTCGCGAATGCTTACAACCTGAGAGTTCATTTGAAGAACAACCACAAGCGGGAGAAAATCGTGAAACAAATCGACGAAATCCGCCAAAAAGTGCACATTTGCTGCAAATGCCACAAACAGTTCGAAACTAAAGAACTGATGATAGAACATGGCAACGCGGAGCACAAAATGCGCCATCCCCCGGATACGGAGAACCAGATCGAGTGTGAAGTCTGCCATCGTCGGTTCAAGTCGGAGCACGTACTAACCGAGCATCAACGCAGACCGTATCGGGCTCACCGATACCAGTGTGCACACTGCGGAAAAACTTTCCAAGAAAAGCAGGTATTTCTGGACCACGAGCAAAGCCACGCCAACATCCGGCCGTACCAGTGCCACATGTGTCCAAAGTCCTTTTCGCTGAAAACCAACTACGTTACCCACATAAAGTACCACTCCCTGCCGAGCGATTACTTCAAGTGCGATAAATGTGGCAAAGGGTTCAAGAAAAAGCATCTCTGGCAAGACCATCAGGTCATTCACATCGAAAGCGCAGAACGACCCTTCAAATGCCATCTTTGTCCCAACACATTCACTCGCCAACAACTGCTGGATTTCCACGTGAAGGAACACCTTGGGGCAAAACCGTTCAAGTGTACAAAGTGTACCTCGTCCTACATCCACGAACGGGACTTGCGCAGGCACATCCGGGCTAAACACGAACCTATCGTACCGTTTAGTTGCGAACTTTGCTCGAAAGAATTTCACCGGAAGGATGCTTACAAAAAGCATCTGAAGACTCACGAAGATGAGGAGGCGAAGAAGTTGGGATGTCAAATTAAATTTCCTGCTTCTGTGGCTTGGTACCGAGAAGCAGGTTCTTGGGTTTGCGTCGACATGAAGATCAAATTGCCGTTACATTCACGGCCGGCCACCGATGGCGAGCGGAAGGACACCATGCAAAAAGTACCGACCGGCGAGGGTTCCTTCAACGAGCAGGACGATCGCGATTGGCAAAATGGCGATGAGCAGAGgacatggttcaaatggTGCAGACCATCGTTCATACCGATTTCAATGATACTGCTGTTGATTGTGATGGTTGTGTTGCTGCCACTGCTGGACACTAACGAGAAACTAGCTGATCAACGTCGAAAGACAGCCCGAAACAGGAATGATGTATGCCTCGAGGGATGTAGAATCAGCATAGTGGAGAGTATTCCCGAGGGGCTAGTCTATCCGAAAGGTAGTCCGTCGTTTATGTCTACGTACGACGCGTGGAAGCTTCTGATAAAATCAGCTCAACAGAAGATTGAAATCGGTTCGTTTTACTGGTCGTTGAGACGCGAAGATGTGTACAACCACTCGAGTGCCTGGCAGGGTgaggacattttcaaaacattgctgGAGACCGGAACCAGCGGAAATGTGTCGATCAAGATCGCGCAAAGCATGCCAACTTCGGCGAATCCCAGCGTGGACACGGAGATCTTCACGAAACGCAACGCAGCCGATGTACGATCGGTGGACTTTCCGCGGCTGTTCGGAGGTGGTGTGCTGCACACGAAGGTTTGGGTGATCGATCGACGACATTTCTACGTGGGCAGTGCCAACATGGACTGGCGATCGTTGACACAGGTCAAGGAGCTCGGAGTGCTCGCCGTGAACTGTTCCTGCTTGGCAACCGATATTGCCAAGATTTTTGATGTCTACTGGGACATGGGATTGCCCAACGCTCAGCTTCCAGATCAGTGGCCAGCAGCGTACTCTACAAAGTACAATGCCAACAACACTCTGTCTGTTCAGTTCGACGATGAGTACAAAGTGGACACGTATCTCTCGAGTTCCCCTCCACCGATGTCAACGCGAGGACGCAGTCACGACGTGGATGCCATTCTCGATGTTATCGAACGTGCCGAGAAGTTCATCCATATTTCGGTGATGGACTATCTTCCGCTGACCCTGTACACTCCAAAGACACAATTCTGGCCAATCATCGACGACGCGCTTCGACGGGCCGCCATCGATCGCAAGATCTCAATTCGCCTGCTAATTTCGTTATGGCCACATTCGCGGTCATCCGAGCAGCGTTTTCTGGATTCGCTGCAAGTGATCTCCAATTCTTTGCCCGGGGTCAGCATCGACATCAAGCGATTTATCGTACCAGCTGACGACGATCAGCAGAAGATCCCGTTCGCGCGGGTTAACCACAACAAGTACATGGTAACGGACAACACGGCCTACATCGGAACCTCGAACTGGTCCGGCGATTACTTTATCGATACGGCCGGAATCGGGCTGGTCATGTCATCTTACGAGGGTAACCGGACCATCGTGAACGACCTGCAGGACGTTTTCGAGCGTGACTGGAACAGTGATTACGCAATTAGAATGGACGAGTTTGCTACAAAGCTTCGGAATCAGTCAAATACGGAGATAGCAGATCTAGACGAAAGATCAGTTAGCTTGAAAGATGACTGTTCGTCCCCGGTGTACATCACAGAGGTCGAAATTGAGACAGAGCTACCTCTTGAGTCCATAGAAGAAACATCTGGCAGTAAGCACGAGCAGGTGGATGGTGTTATTAAAACTTCTCAAGAAGAAAACAATACGTCAGAACCCCCGGATGATACATCCCAGTTTTTGCTTCCGGAGACAGAACAGAAAGATGATTCCGATAATGAATGCTTCCCAGATTTAGATGTATTTTATTCCTCTGAAGATGAGAGCGATTCTATTGAAGAACTGAACTTTAGCTCAGACGAAGATCAACGGGAGGGCAAACAACCTCGGAAGCGACTTTACTATGGGGTGAAATCAGATTCCCAGCCAAAACGATGCTGTGATTGCAAAGAGCCACTCGTTTCCCAAGAGAAGGTGGCGGAACATTCCGAATTGTACCACCAACAGCATCGAGTAACGAATCCAAAGGAGTTTGGCGACAAACGGTTCGAGTGTCCCGTTTGTTTTAAGCGATTTGAGACGAAGAAACTGTACCTGCAACATCAGCGAAAAATGTACGTTGACGTGCTTCATCCGTGTTCGAAATGTGAGGAAGAGTTTGCCAATCTGTACGTATTGAAGAGACACCTCAAAGTCGATCACAAAAAGAAATTTCTGATCACGGAGCTTGAAGAGCTGCGAAGTCAGTCCAACATCTGCTGTGGATGTAAGCAGCATTTCCCTACTGCCGAGACACTCAAACAACACGTTGAAAAGGTTCACTATCCTGAACACGTACTTTATGATACAAGTAACAGGTTTGAGTGTAACGTGTGCTTCAATAgatttaaaactttgaaatcGCTCAAACATCACCAACTAcgattgtacaaagaaaagaaatTTGTCTGCACTCTATGCGGGAAAGCCTTCAGAGAGAAGATTCGTTTAGCAGAGCACGAAAACTCCCATCGAAAGATTCACCAGTTTCTGTGCTCGTTCTGTCCGGCAACATTCGCCATGAAAAATTCCTACGAAGTTCACCTGAAGATGCACGACGGGGAAGAGCGCTTCAACTGTGAATACTGCGGTAAAGGATTCCGCAAGAAGAGTCTCCTGTTGACGCACCTCCAAACTCACAGCCTGGATCGCCCGTTCAAATGTCACCTGTGCCCGAACACCTTCACCCGCCAGAACATTCTGGATTCACACCTGTTGACCCATTCGGACGCCGGCAAGCCGTTCAAGTGCCTACAGTGTCCGGCGTCGTACATCCATCAGCGTGATTTGCGAAGGCACACGCGGGAGAAACACGAAGGTATTCGCAGCTTCAAGTGTACCAAGTGCCCGAGGGCCTACATCCGGCAGAAGCTACTGCTGAACAAAATGTCTGCGAAGATATTCAACCAAATCTGTCGGATTTGCACGGATGCGTCTGGCGACGAAATGCATCCGCTGTACGAATCGTTCGGCGACGGGAAAACGCCAGCGCACTTTATTGAAGAATGCTTCGGAATCACGATCAACATACTCGACGGCATGCCGTCAAATTACTGCAGCAGTTGCAAGGGAGACTTGCAGGCGGCACTCCGGTTCCACGGCCGCCTGGTAGATTCCGAAGTCAAACTCAAGGATATGTTTGCCGTGCCCAAGATTGAAGTCACCGAACCTGTCGACGGAAGTATCTCGTCGGTTTTCATCTCGGAGGTCTACATCAAGTCGGAAGCGGAAGAGCTCGAACCGGGAGAAGTTTCCAATTACGGTGGAAATTCAAGCGAAGAAGAGTTTCAGCCTAGGCCGAAACGAAAGACCAGACTAAGCAAAAGAAAGGCAGCTAAAACGGAACAACCGCCGATGGTTTCCGTGAAGGCGGAAATACATGATGATTCTGTGGACCGGAAAGCTGCAGAAGACGTTGAAGATGTTAAGCCGGACACTTCGAAGCCACCGAAGAAGCGCTGGACTATGGAGTCAGACGTTGATTCGAGCGACGATAGCTTGTCTGATTACGCCGACAGTGCACGCAGCTCGGACagcgacgatgacgatgaaaaTGGTCACTCGTCCAAGAAGAAACGCTTGTATTACGGCGTCAAAGCGGATTCACAGCCGAAGAGATGCTGTGAATGCAAGGACCTCTTGCTGGACAGCTACGAGAAGGTTCAAGAACACTCGGACAAGTATCACCTGCGGTATCGCGTGACGAATCCAAGGGAAATCGACGACAATCCCTTCGAGTGTCCGCACTGCTACAGGCGATTTGAGTGCAAGAAGGAGTTTCTTCGTCACCAGCGCAAAATGTACGTAGAAATGTTACATCCGTGCCCAAAGTGTAACGAAGAGTTTGCGAACCATTACGTGATGcagaaacatttgaaaacgtaCCACAAGAAAAAGCTGATTATTGAACGGATGGAGGAATTGCGCCAGGAATCTCACATTTGCTGCGCTTGCAAGCAAAAGTTTGAAAGCAAGGAAGCACTGAAAGCCCACGCTGACGATGTTCATCTGAAGGAAAGCCAAGCGTACGACGGGGACTTGGAGATTGAGTGTGATGTTTGCTATCGACGCTTCAAGACTCGCCAATCCATGAAGGTGCATCAATATCGTATGTTCAGAGGAAAGAAGTTTATTTGCAGTTTGTGTGGAAAGGCGTTCAAGGAGAAAAGTTTCCTGCGGGACCACGAGAACTCTCACCGGCGGGAGAAACCCTACGAGTGTCCCAAGTGCGACGCTCGGTTCTCCATCAAGGGTTCGTTTGATGCCCACGTTCGACTGCACGACGCAAAGGAGGAGTTCAAGTGCGAATATTGCGGTCGCGGATTCCGCACCAAGAGCCTGCTCAAGGGACATCTCACCGTTCATTCCGAGGATCGCCCATTCAAGTGTCACCTGTGTCCGATCACATTCACGCAGCAGCGACTGCTCGATTCACACATCGAATTTCATCTGGGCAATAAGCCGTTCAAATGCCAGCAGTGTCCGGCCTCGTATCGATACCAGCGGGACTTGCGTGGACACATTCGCGAGAAGCACGAAGGAATTCTAAGTTTCCAGTGTACGCAATGCCCGAAGGCGTTCAACCGGAAGAAGCCGCTGTTGGTCCATTTGAAGACCCACGAAGCCATGTAA
- Protein Sequence
- MDPNASIDVEYKVCRICVQSTVEDNYPHNELYDEVSVETMLKEVLEKLQIPDDENLAVRCCSSCREELWITYRFIKKLEDANNKIKNLEHYVVEADKSDPLTESPSKLQIDVKLEYEVEDYSTYEKENTNDFDETDSDDKPLMQRRAKRKPGRKRKKVKTDPEDSDESEYSPKQEEEENSSASEAEEKEELTKNKRTRYAITANSQPKRCCGCKEPVSTHEQLEEHSEKFHQQRAFDAEILEQKPEECSICYERFETRMELLLHRRKAFAKELHSCKKCPADFANAYNLRVHLKNNHKREKIVKQIDEIRQKVHICCKCHKQFETKELMIEHGNAEHKMRHPPDTENQIECEVCHRRFKSEHVLTEHQRRPYRAHRYQCAHCGKTFQEKQVFLDHEQSHANIRPYQCHMCPKSFSLKTNYVTHIKYHSLPSDYFKCDKCGKGFKKKHLWQDHQVIHIESAERPFKCHLCPNTFTRQQLLDFHVKEHLGAKPFKCTKCTSSYIHERDLRRHIRAKHEPIVPFSCELCSKEFHRKDAYKKHLKTHEDEEAKKLGCQIKFPASVAWYREAGSWVCVDMKIKLPLHSRPATDGERKDTMQKVPTGEGSFNEQDDRDWQNGDEQRTWFKWCRPSFIPISMILLLIVMVVLLPLLDTNEKLADQRRKTARNRNDVCLEGCRISIVESIPEGLVYPKGSPSFMSTYDAWKLLIKSAQQKIEIGSFYWSLRREDVYNHSSAWQGEDIFKTLLETGTSGNVSIKIAQSMPTSANPSVDTEIFTKRNAADVRSVDFPRLFGGGVLHTKVWVIDRRHFYVGSANMDWRSLTQVKELGVLAVNCSCLATDIAKIFDVYWDMGLPNAQLPDQWPAAYSTKYNANNTLSVQFDDEYKVDTYLSSSPPPMSTRGRSHDVDAILDVIERAEKFIHISVMDYLPLTLYTPKTQFWPIIDDALRRAAIDRKISIRLLISLWPHSRSSEQRFLDSLQVISNSLPGVSIDIKRFIVPADDDQQKIPFARVNHNKYMVTDNTAYIGTSNWSGDYFIDTAGIGLVMSSYEGNRTIVNDLQDVFERDWNSDYAIRMDEFATKLRNQSNTEIADLDERSVSLKDDCSSPVYITEVEIETELPLESIEETSGSKHEQVDGVIKTSQEENNTSEPPDDTSQFLLPETEQKDDSDNECFPDLDVFYSSEDESDSIEELNFSSDEDQREGKQPRKRLYYGVKSDSQPKRCCDCKEPLVSQEKVAEHSELYHQQHRVTNPKEFGDKRFECPVCFKRFETKKLYLQHQRKMYVDVLHPCSKCEEEFANLYVLKRHLKVDHKKKFLITELEELRSQSNICCGCKQHFPTAETLKQHVEKVHYPEHVLYDTSNRFECNVCFNRFKTLKSLKHHQLRLYKEKKFVCTLCGKAFREKIRLAEHENSHRKIHQFLCSFCPATFAMKNSYEVHLKMHDGEERFNCEYCGKGFRKKSLLLTHLQTHSLDRPFKCHLCPNTFTRQNILDSHLLTHSDAGKPFKCLQCPASYIHQRDLRRHTREKHEGIRSFKCTKCPRAYIRQKLLLNKMSAKIFNQICRICTDASGDEMHPLYESFGDGKTPAHFIEECFGITINILDGMPSNYCSSCKGDLQAALRFHGRLVDSEVKLKDMFAVPKIEVTEPVDGSISSVFISEVYIKSEAEELEPGEVSNYGGNSSEEEFQPRPKRKTRLSKRKAAKTEQPPMVSVKAEIHDDSVDRKAAEDVEDVKPDTSKPPKKRWTMESDVDSSDDSLSDYADSARSSDSDDDDENGHSSKKKRLYYGVKADSQPKRCCECKDLLLDSYEKVQEHSDKYHLRYRVTNPREIDDNPFECPHCYRRFECKKEFLRHQRKMYVEMLHPCPKCNEEFANHYVMQKHLKTYHKKKLIIERMEELRQESHICCACKQKFESKEALKAHADDVHLKESQAYDGDLEIECDVCYRRFKTRQSMKVHQYRMFRGKKFICSLCGKAFKEKSFLRDHENSHRREKPYECPKCDARFSIKGSFDAHVRLHDAKEEFKCEYCGRGFRTKSLLKGHLTVHSEDRPFKCHLCPITFTQQRLLDSHIEFHLGNKPFKCQQCPASYRYQRDLRGHIREKHEGILSFQCTQCPKAFNRKKPLLVHLKTHEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -