Cpip009199.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Culex pipiens
Gene Symbol
-
Assembly
GCA_016801865.2
Location
NC:137677817-137708178[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 3.7e-05 0.0011 19.8 1.1 2 21 138 157 137 158 0.95
2 28 0.35 11 7.3 0.2 3 21 184 202 182 203 0.93
3 28 0.00013 0.0039 18.1 1.0 2 22 228 248 227 248 0.95
4 28 0.00039 0.012 16.5 1.5 1 23 259 282 259 282 0.97
5 28 0.067 2.1 9.5 1.0 2 23 370 392 369 392 0.97
6 28 6 1.8e+02 3.4 0.7 1 23 395 417 395 417 0.93
7 28 9.5e-06 0.00029 21.6 0.3 2 23 423 444 422 444 0.97
8 28 0.019 0.57 11.3 0.4 1 23 450 472 450 472 0.96
9 28 0.00024 0.0075 17.2 0.0 1 23 478 501 478 501 0.95
10 28 0.0035 0.11 13.5 6.5 1 23 507 529 507 529 0.98
11 28 0.0009 0.028 15.4 0.3 1 23 535 558 535 558 0.97
12 28 0.0025 0.077 14.0 0.1 1 23 564 586 564 586 0.98
13 28 3.6e-05 0.0011 19.8 2.0 1 23 739 761 739 761 0.98
14 28 0.042 1.3 10.1 0.3 1 23 767 790 767 790 0.94
15 28 0.00044 0.013 16.4 0.6 1 23 796 818 796 818 0.99
16 28 3 91 4.3 1.2 2 23 1105 1127 1105 1127 0.93
17 28 0.023 0.7 11.0 1.9 1 23 1130 1152 1130 1152 0.95
18 28 0.19 5.7 8.1 0.5 3 22 1168 1187 1167 1187 0.96
19 28 2.9e-05 0.0009 20.1 1.2 2 23 1244 1265 1243 1265 0.98
20 28 0.016 0.5 11.4 0.1 1 23 1269 1291 1269 1291 0.98
21 28 0.0015 0.046 14.7 1.3 1 23 1297 1319 1297 1319 0.96
22 28 0.0016 0.05 14.6 1.8 1 23 1332 1354 1332 1354 0.91
23 28 0.0007 0.022 15.7 0.9 3 23 1360 1380 1358 1380 0.97
24 28 0.084 2.6 9.2 3.7 1 23 1386 1408 1386 1408 0.95
25 28 0.00029 0.0089 16.9 0.6 1 23 1414 1437 1414 1437 0.94
26 28 0.0023 0.071 14.1 0.9 1 23 1443 1465 1443 1465 0.96
27 28 0.0067 0.21 12.6 0.2 1 23 1471 1494 1471 1494 0.96
28 28 0.001 0.032 15.2 1.7 1 23 1500 1522 1500 1522 0.98

Sequence Information

Coding Sequence
atgAAGACCGAATTCAACGAAATAGTAAACCCGGCGACGCTGTGCCGAGTTTGCATGGCCACCGAAGAAGATCATTTCTCGAACCTGTACGAGGAATCCCCATCCAGTCAGCCGCCCATCAGCTTGCACGAAATGCTGCAGGTGATTTGCGCTCCGGTATTTACCAGTTCCGACTCGAGCGGCGTGCCGGAAATGCCAACCAGAGTTTGCAACGTGTGCCGGGATGCCATTATTGCGGCCTTCAACCTGCACCAGCAGTGCATCGAAAGTGATCGACGGTTGGGTGAGCTACTGACGTTTGAAAAGGAATTTGACTTTCCAAAGAGCAACGAGGAACTCGAAGATTTTCCCACTACGGTGGTTGTAAACGAGGTTGTGATGCCAACGGAGGACGCGGGGGACGTTTCGAAAACTTGCTCAGAGTGTGGCAAGGCATTTTCACGGAGATTTACCTTGCTAAGGCATCAAAGGAATGGAGTGTGCCCAGGAAAGAGCAACGATACGAATCCCAAAGATCCTCTGTTTGATGAGTGCAGGCTGCCTAAAAATTGCCTCGTTTGCGATAGGGAATTTGATAGTCAATTAACATTAGATAAGCACCTGCAAAGCGGGTATTGCCCGAATAAACGTAAGAAGAGGTTTGTAGGAGACGGAACATCAAACTCAATAAGAGATTCAAAAACGTGTGCCCAATGCGGAAAGGTATTTGCGAGGAGATACACCCTTTTTAGGCACAAGCGAACCGGCTCTTGTGCAGGAACGGATCCAAAAATGTTCCCGTGTCGGTTGTGCGACAAGGCTTTCAATACGCCCAACGCGTTGCAAGGTCACCGTAGAAAGTGTCATGGCTCTAACGCTGACAGTGTAATTTCGGCACCGGAAGCAGAATTCTGCAGCGAAGACAAGATGGCGTCAGAAGAAAGGAAGGCCGATGAGGTGACTGTTGGTCCTTCAATGAGTAGTGAGAACATGGTGATGATCAAAGTCGAGGCACAGGACCTGATGGATGAAAATGGACATGAGAACCGAAGTTTCAACTCTGCAGAAAACACAACAGTGAAAACAGAAGACGAGCAAGCTGCACAACGAGTCACGGCGGGTACGAAAACATGCTCGGTTTGCTCGGAAACGGTTGAAGACattgcaaaattgaaaattcacatGAGAAGTTGCCATCAGTTGTACTTGTGCGAGATATGTAGTGCAGTTTTCCTTACACGTCATGTTCTCTGGTATCATACACTGAAGCATAAAGAGCCAAATGTGACTTGCCCTGTATGTGGGAAGAAACTATCAAGCAAGTATAATCTAGAGCTGCACATGCTGAGGCACACTGGAAAAAAGATGCACGCCTGTGAGTTATGTTCGATGCGGTTTACCACTTCTGGAGCGAAAGCTGCCCACTTGCGAATCCACAAGAAAGAGCGGCCGTTTGTGTGCGACATCTGTGGAAAAAGAGTAGTATCAAAAGCGTCGCTAGCTAAACACGTGAAGGAGATCCACGAAAATATAAGACGCTTCGTGTGCTCGGTGTGCACTCGAAGGTTCACCACCAAATCCCACCTGTCCTGCCACATGCTGACTCACACGAAGGAAAAGCCTTACAAATGCAAGCTCTGCCCGCAGGCCTACTCGCAGACCACCGACCTGGTGAGGCACGTTTCCCGCGCCCACTGGAGCGGTAAGCCGTACCCTTGTGACCGGTGCGATGAGTCCTTCCGGCTGATTGAGGGCCTGCGAGAGCACTACCGAGTGCACGTTCAGTCTGGCGAAGGTTTGAGTGAGATGGCAGAGGTGCGGTTCAACAGCATGACCATTATGGACAAGCTTTTTGCCAAGATTAAGCAACAACGAGCTGAAGAAAGTGGAAATCTGGATTCATGCCACAATAATTTGGTTCCGGACACGACGGCACTGTGCCGAGGTTGTATGACGCCTAAAGAAGGAAACTGCACGAATCTGTACGATTCCTGTTCGCTTCCTGCTGGTCAGCCCAGCTTACAcgaaatgcttaaaattatttgtgtTCCGGTTTTTGGCGAATCCGAAGCAGATGATCCACCCGGAATGCCGACGGACGTATGTTCAAGTTGTCGACACGCCATCGTAGCGGCCTTTCACCTGCACCAGATGTGCGTCGAAACGGATCGTCGATTGGGCGAGTTGCTGGCATTGAGGTGGGAACTTGAGGGACCGGACGGAGGCCAACGTCCTCACGAGTGTTCGGTGTGTGGATTCAAGTTCTCCATCCTATCGCAGCTCAAACGTCACATGCTAACTCACACGAAAGAAAAGCCACATAAATGCCAGCTGTGCCCCCAAGCCTACGCCCAGACCAACGATCTGGTCAAGCACGCGGCTCGTGTGCACGGCATTGACAAACCATATCAATGCGATCGGTGCGACGAGGGCTTCCGGTTGTTAACGGatctgcgacagcactaccggGTGCACGTGCAATCGACGGAGGGTGGAGCCGACCAGATGGACGAGGTGCGATTTACCACTGTGGCGATTCTGCAGAGAGCGTTCTCGAAAGACAAACAACAGCAGGCTGAGGGAAATGACAAATTGGAcCGAGTGATGGTCGGCTTGCTATCGCGAATATCGAAAGCCCATCACATCGACGAGAAAAACCCTATCGCTGGCTCCGATGGAACTATCGTTCCAACCGGAGAGACACGCACacgaaattgctATCGCCACTTGCAAACaatcaaaatgaaatttgatttgttcgCGGACACGAAGGCGCTGTGCCGGGTGTGCATGACGGCCACGGATGGGCATCGCACCGGCCTGTACGACGGAACTTCGCTTGTAGCCGGGCAGCCGAGTTTACATGGAATGCTGAAAGCCATTTGTGCGGCGGTATTTGATAAATCTGATGCTGACTATCCAACGGGATTGCCGACGCAGGTCTGCGCCAACTGTCGGAATGCTATCCTCGCGGCCTTCAAGCTGCACCAGACGTGCATCGAAACCGACCGCCGATTGGGCGAGCTGCTGGCGCTAAAGTGGGAGCTCCAGGATCTTGGGGGCGGTGGAGAATCCGGAGATCCGCTGAGGCCCATTAATGAGAAAGGAGAAATGGCGAACAAGAGCGTTGAACTGGGAGGGGATGGTACCGTTCAAATTGTAATTCATCCCGGACCTaatgatcaaaacaatgtcTCGTGCTCAATGAGTGAGAATGAAGGAAAGATTAAAGTAGAAGAACTGGACTTTATGGATGAAAGCGGAAACGATGGTCATGACTCTAGTAGTATTGACCAAGACGAAATGGCCGAAGAAGTTGACAATGAGATGGAAGTATGTGAAATTTGCTCTGAAAAATTCATTGAAACTTCGATCCTATGCACTCACATGACAAATAGGCATCAATTGTACATGTGCGATTTATGCCATCAAACGTTTGGATCGCAGTTCTGGCTATCGAAACATGAAACCCTGCATTCAAGGACTAGAAATCATCTAAATGTATATCCAGACCCCGTGTTTTgttccgagtgtggccaaacGTTGCAAAACACCGCTAGGCTGCGCAAACATTTACGGACGAGATGTGCTAAGCTGAAAGCTTTATCGCTAACGAATAAGGAAGTTGCTATCAGAACCTGCAGAGTATGCGGTAAATTTCATCAATCTGTTCGTCGCCTGTTTGAGCATATGAAACAGGACCACCCGGGCAGAAACAAGTTGGGTTTGGTCGTTGTTAGGAAGCGGAACCAATGCAGTAAATGTCAGGAATCGTTTCCTACAAAATCAGCTCTAACAAAACATCGACAGGTCCACAATGCGCCTTTTAAATGTTCGATATGTGGTAAAGAGTTGCTCACTAAAGCAGCTCTCAAGGGCCACATCATAAGACACTCGGATGTTAAACCCCATTCTTGCGATTTGTGTCCGGTACGGTTTTACACGAACCAGGAGCTGAAAAGTCACATGTTACTGCACGCTAAACAACAGAATGCCATTAGAGAAATAAAGTTGCACAAGTGTAAAACTTGCAACGCATCCTTTCCTACGAAAGCAGCTCTAACGAAACATCGACCGACACACAACGTACCTAGCAACTGCTCGGTCTGTGGTAAAACGTTGCATTCCAGCGCGGCACTCAAGGTCCACATGATGAGACACGCTGATACTAAAGCACACTGTTGTGATTTGTGTCCGCTGCGGTTTTACACAAAAGGGGACTTGTACAATCACAAGGCATCTCACGTTCAACAACGGACTCACATTTGCGATATTTGTGGGTCGAAGTTTGCAAAGCAAAGTGCGCTGAAGAGACACGTTAAACTTGTCCATGAAGGCCTTCGCCCCTTTGAGTGCCAGATTTGTGGTTTCAAGCTGTTCACGTCGACGCAGCTGAAGCGCCACTTGCTTGGCCATTCGAAGGAAAAGCCCTACAAGTGCGAGCTGTGCACACAAGCCTTCGTCAAGACCGACGAGCTGGCCAATCACGTGGCTCGCAAACACCGGGGCGGCCTACCGTACCCTTGCGATCGCTGCGATGAGTCGTTCCGGTTGATGACGGAGCTGCGCCACCACTACCGGGTTCACGTTCAAGCTGGCGAACAGATCGATGAGATGCGGTTTACCGCGATGGCTACGTTGCAGCGAATATTCGCGAGGGATAAACAGAAGCTGGCTGAAGAAGGCAATGGTGCGTAA
Protein Sequence
MKTEFNEIVNPATLCRVCMATEEDHFSNLYEESPSSQPPISLHEMLQVICAPVFTSSDSSGVPEMPTRVCNVCRDAIIAAFNLHQQCIESDRRLGELLTFEKEFDFPKSNEELEDFPTTVVVNEVVMPTEDAGDVSKTCSECGKAFSRRFTLLRHQRNGVCPGKSNDTNPKDPLFDECRLPKNCLVCDREFDSQLTLDKHLQSGYCPNKRKKRFVGDGTSNSIRDSKTCAQCGKVFARRYTLFRHKRTGSCAGTDPKMFPCRLCDKAFNTPNALQGHRRKCHGSNADSVISAPEAEFCSEDKMASEERKADEVTVGPSMSSENMVMIKVEAQDLMDENGHENRSFNSAENTTVKTEDEQAAQRVTAGTKTCSVCSETVEDIAKLKIHMRSCHQLYLCEICSAVFLTRHVLWYHTLKHKEPNVTCPVCGKKLSSKYNLELHMLRHTGKKMHACELCSMRFTTSGAKAAHLRIHKKERPFVCDICGKRVVSKASLAKHVKEIHENIRRFVCSVCTRRFTTKSHLSCHMLTHTKEKPYKCKLCPQAYSQTTDLVRHVSRAHWSGKPYPCDRCDESFRLIEGLREHYRVHVQSGEGLSEMAEVRFNSMTIMDKLFAKIKQQRAEESGNLDSCHNNLVPDTTALCRGCMTPKEGNCTNLYDSCSLPAGQPSLHEMLKIICVPVFGESEADDPPGMPTDVCSSCRHAIVAAFHLHQMCVETDRRLGELLALRWELEGPDGGQRPHECSVCGFKFSILSQLKRHMLTHTKEKPHKCQLCPQAYAQTNDLVKHAARVHGIDKPYQCDRCDEGFRLLTDLRQHYRVHVQSTEGGADQMDEVRFTTVAILQRAFSKDKQQQAEGNDKLDRVMVGLLSRISKAHHIDEKNPIAGSDGTIVPTGETRTRNCYRHLQTIKMKFDLFADTKALCRVCMTATDGHRTGLYDGTSLVAGQPSLHGMLKAICAAVFDKSDADYPTGLPTQVCANCRNAILAAFKLHQTCIETDRRLGELLALKWELQDLGGGGESGDPLRPINEKGEMANKSVELGGDGTVQIVIHPGPNDQNNVSCSMSENEGKIKVEELDFMDESGNDGHDSSSIDQDEMAEEVDNEMEVCEICSEKFIETSILCTHMTNRHQLYMCDLCHQTFGSQFWLSKHETLHSRTRNHLNVYPDPVFCSECGQTLQNTARLRKHLRTRCAKLKALSLTNKEVAIRTCRVCGKFHQSVRRLFEHMKQDHPGRNKLGLVVVRKRNQCSKCQESFPTKSALTKHRQVHNAPFKCSICGKELLTKAALKGHIIRHSDVKPHSCDLCPVRFYTNQELKSHMLLHAKQQNAIREIKLHKCKTCNASFPTKAALTKHRPTHNVPSNCSVCGKTLHSSAALKVHMMRHADTKAHCCDLCPLRFYTKGDLYNHKASHVQQRTHICDICGSKFAKQSALKRHVKLVHEGLRPFECQICGFKLFTSTQLKRHLLGHSKEKPYKCELCTQAFVKTDELANHVARKHRGGLPYPCDRCDESFRLMTELRHHYRVHVQAGEQIDEMRFTAMATLQRIFARDKQKLAEEGNGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-