Cpip011137.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- bab1
- Assembly
- GCA_016801865.2
- Location
- NC:195549288-195559837[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-12 4e-09 36.5 0.0 2 45 437 480 436 480 0.93 2 2 5.4 3.4e+03 -1.7 0.3 4 15 582 593 582 597 0.85
Sequence Information
- Coding Sequence
- atgggcagcagcgaaGCGCAGACGTACTGCCTGCGATGGAACAACCACAAGTCCAACCTGGTCGAGATCCTCGACGCGCTCATCAAGATGGAGTGCTACGTGGACTGCACGATCGTGGTGGACGAGCAGAAGCAGTTCAAGGCGCACCGCGTGGTGCTCGCCGCGAACTCGCCCTACTTCCAGTCGATCCTGCAGGACGTCCCGATGGACCACTGCAGCATCCTGTTCCCGGGCGTGGCGGCCTTCGAGATGCAGGCCCTGCTCGAGTACATGTACACCGGCGAGGTTAACGTAACGCAAGCGCAGATCCCGCGCATCATGAAGATCGCCGAGCAGCTGGAGGTCAAGGGCCTGTTTGACATGGCCGACCTGAAGGGTCGCTTCGAGAAGATGGTGGTCGAACGCGAGACGGAGTTTGCCAGCAACAACAACTACGCCAGCAAGTCGTCGCAACCGCCGGTCAGTGAACAGTCGCAGCAGCAGTCGTCACCCCCGGTGATCTCGACCTCCACGAACGTCTCGATCGCACAGAGTAGCAGCTCATCCCCGCCGTACACGTACAAATCCCCCTACACCAGCCTGTACTCACGCACCAGCCCCACGGCGATCGAGCGAGAGCGGGAACGTGAGCGGGAAAGAGACCGTGAACGCGATCATGAAGAACGTGAACGCCGCGATCACTCCTCTTCGTCGACCTACTCGCAACCGCCACCCCACCAGTCCTACCCCCACGACAACGAACCCCGCCCAGATGACCTCCCGCAAACCTCCTCGgccgcatcatcatcctccCAGCAGCCCCCGCAGAACCTCCGATGGCCACTACCCGGTCAGATCCCGGTGACCCTGCACCAGCCCCACCAACCCCTGCACAGCATGCTCAGCTCCGTGTACGACTCCAGCTCGGACATGAACCCACTGAAGCGCAAGAAGCTCCAATCCATGACGACCATGCTGCGCGACACCCCCATCCTGAGGAACGTCCTCGCCCAACCGAACGCCGCCGACTCCTCGCAAAGCTCGCCGTCCCCGCTCTCGCTCCAGCCGATGCCCGGCATGAAGCCGGAAGCGGGACCTGCCACCGCCGGCGGTCATCACCACCCGGCCGATCTCACCAGCAGTCACCACTCCAACGGTGGAGGTTACAAGCACCACAAGGAGCCCCTCTCGCCGTACGGTGACAAGTCGTACGACGACGATGCCCTGCTCGACTCGCGCCTCAACTACAGCGCGGACGATGCCCGCCTTGCGTCGTACGTCCCGCACCAGCAGCAGAAGCCCGAGTGGAAGCGCTACAAGCAGTACACCCGCCAGGACATCATCAACGCGATCGAGTGCGTGCGCAAGGGCATGAGTGCGCTGCAGGCCTCGCGCAAGTTTGGCGTCCCCTCGCGTACCCTGTACGACAAGGTGAAAAAGCTGGGCATCACCACCGGAAGGCCGATGAACCGAGCGATCAAGCGTAGCCCCAGTTCCGGCGGTAGCCCGGCGCCCTTCCCGTACGGTTTGAGCGGAGCGTCGCACATGTTCGGAGGCGAGCAGCCCATGCCATCGCAGTCCCAGATGCAGCAGCACCGTGACGAAGAGGACAAGAACCGCATGATGAAGATGGACCACTCGGGGCACCATCTGCCTCCGACGATCCCCCATCCGGCGGCGGCCCTGCTCGATCCGTCCTTCCTCCAGCAGGCTCTGGAGGCCCGCGGTGGAGACATCGCCGGACGTGAAGCCCTGCACGCCATGGCCTTTGCCGCCGCAGCCCATGCAGCGGTCAACGGTATCAACACCTCGCCGGGAACCCACGGCACCGCTCGCTCCCCAAGCCCGAACGTACTCATGAAGTACATGCGATCGGCAATGGGATCCCCGGAGGATCGCGATCACCACCCGCGGGACTCGAGCGAAGGTGACCGACACCACCACAGCAACGGCTCCGAGGTGTACGATCGCTCCGGAACCGAGCGGGACTCGATGGATCACGAAGATCCGCGGGACGTGAGCGGCGGCGGTGACGATCTCGTCGAGGATCTCTCCATGGCCCGACGCGGAGGTGCTGGCCCGGACTCGGACCGTGGATCGGTCTCCCCGCAGCCCATGCCCTCGAGCCATCAACACCACCCCTCCGTTCTGTCCATGCCCCCGCAGCAAGGTTCCGTGATCGTGCCGGCCCCGCCCAAGATCAAGGACGACTACAACCCGCTCAACATCAAGCGCGAAATCATCGCCGACAGCAACGCCGCTCCCATGGAGTCGTCGTAA
- Protein Sequence
- MGSSEAQTYCLRWNNHKSNLVEILDALIKMECYVDCTIVVDEQKQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVAAFEMQALLEYMYTGEVNVTQAQIPRIMKIAEQLEVKGLFDMADLKGRFEKMVVERETEFASNNNYASKSSQPPVSEQSQQQSSPPVISTSTNVSIAQSSSSSPPYTYKSPYTSLYSRTSPTAIERERERERERDRERDHEERERRDHSSSSTYSQPPPHQSYPHDNEPRPDDLPQTSSAASSSSQQPPQNLRWPLPGQIPVTLHQPHQPLHSMLSSVYDSSSDMNPLKRKKLQSMTTMLRDTPILRNVLAQPNAADSSQSSPSPLSLQPMPGMKPEAGPATAGGHHHPADLTSSHHSNGGGYKHHKEPLSPYGDKSYDDDALLDSRLNYSADDARLASYVPHQQQKPEWKRYKQYTRQDIINAIECVRKGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRAIKRSPSSGGSPAPFPYGLSGASHMFGGEQPMPSQSQMQQHRDEEDKNRMMKMDHSGHHLPPTIPHPAAALLDPSFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGINTSPGTHGTARSPSPNVLMKYMRSAMGSPEDRDHHPRDSSEGDRHHHSNGSEVYDRSGTERDSMDHEDPRDVSGGGDDLVEDLSMARRGGAGPDSDRGSVSPQPMPSSHQHHPSVLSMPPQQGSVIVPAPPKIKDDYNPLNIKREIIADSNAAPMESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400740;
- 90% Identity
- iTF_00400740;
- 80% Identity
- iTF_00400740;